Wall clock time and date at job start Wed Apr 1 2020 05:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38083 * 120.00055 * 2 1 4 4 C 1.38868 * 120.00114 * 180.23432 * 3 2 1 5 5 N 1.39889 * 120.00756 * 179.74556 * 4 3 2 6 6 C 1.47006 * 111.00027 * 303.65818 * 5 4 3 7 7 C 1.53099 * 109.25747 * 177.60813 * 6 5 4 8 8 O 1.43007 * 109.26061 * 56.84828 * 7 6 5 9 9 C 1.43019 * 113.73989 * 301.33045 * 8 7 6 10 10 C 1.47017 * 110.99980 * 180.02562 * 5 4 3 11 11 C 1.38914 * 119.98388 * 359.76765 * 4 3 2 12 12 C 1.38033 * 119.99932 * 0.02562 * 11 4 3 13 13 C 1.38835 * 120.00082 * 179.75189 * 2 1 3 14 14 N 1.40155 * 119.99272 * 0.02562 * 13 2 1 15 15 C 1.34777 * 119.99830 * 154.87533 * 14 13 2 16 16 O 1.21298 * 119.99893 * 354.49182 * 15 14 13 17 17 C 1.50703 * 119.99780 * 174.48002 * 15 14 13 18 18 H 1.08994 * 109.47124 * 320.00699 * 17 15 14 19 19 N 1.46898 * 109.46799 * 200.00668 * 17 15 14 20 20 C 1.53003 * 109.46815 * 80.00889 * 17 15 14 21 21 C 1.52999 * 109.46901 * 184.99863 * 20 17 15 22 22 C 1.50703 * 109.47151 * 179.97438 * 21 20 17 23 23 H 1.08001 * 119.99741 * 0.02562 * 22 21 20 24 24 C 1.37874 * 120.00082 * 179.97438 * 22 21 20 25 25 N 1.31514 * 119.99946 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 119.99837 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47043 * 60.00978 * 26 24 22 28 28 H 1.48506 * 109.46723 * 180.02562 * 26 24 22 29 29 H 1.48492 * 109.47709 * 300.00584 * 26 24 22 30 30 H 1.08999 * 109.46588 * 270.24717 * 1 2 3 31 31 H 1.08997 * 109.47242 * 30.25128 * 1 2 3 32 32 H 1.09004 * 109.47077 * 150.25528 * 1 2 3 33 33 H 1.08003 * 119.99939 * 0.02562 * 3 2 1 34 34 H 1.09001 * 109.50819 * 297.54312 * 6 5 4 35 35 H 1.08998 * 109.51074 * 57.67433 * 6 5 4 36 36 H 1.09006 * 109.50720 * 296.91157 * 7 6 5 37 37 H 1.08998 * 109.54468 * 176.80491 * 7 6 5 38 38 H 1.08997 * 109.50572 * 298.73549 * 9 8 7 39 39 H 1.08998 * 109.54802 * 178.62313 * 9 8 7 40 40 H 1.08998 * 109.50244 * 302.33074 * 10 5 4 41 41 H 1.08995 * 109.50404 * 62.41495 * 10 5 4 42 42 H 1.08002 * 119.99645 * 180.02562 * 11 4 3 43 43 H 1.08004 * 119.99574 * 179.97438 * 12 11 4 44 44 H 0.97001 * 120.00086 * 334.88500 * 14 13 2 45 45 H 1.00899 * 110.99942 * 176.05149 * 19 17 15 46 46 H 1.00895 * 111.00109 * 300.00024 * 19 17 15 47 47 H 1.08994 * 109.47222 * 64.99443 * 20 17 15 48 48 H 1.09003 * 109.46860 * 304.99582 * 20 17 15 49 49 H 1.09005 * 109.47064 * 59.99866 * 21 20 17 50 50 H 1.08994 * 109.47049 * 300.00141 * 21 20 17 51 51 H 0.96998 * 119.99960 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1958 0.0000 4 6 3.5861 1.1958 -0.0049 5 7 4.2857 2.4072 -0.0103 6 6 3.8864 3.2411 -1.1532 7 6 4.6300 4.5778 -1.0873 8 8 6.0388 4.3331 -1.0616 9 6 6.4627 3.5244 0.0392 10 6 5.7377 2.1771 -0.0155 11 6 4.2804 -0.0074 -0.0050 12 6 3.5899 -1.2026 -0.0006 13 6 2.2012 -1.2023 0.0052 14 7 1.5003 -2.4160 0.0099 15 6 2.0786 -3.5301 -0.4809 16 8 3.1647 -3.4638 -1.0170 17 6 1.3761 -4.8581 -0.3633 18 1 0.8986 -4.9313 0.6138 19 7 2.3538 -5.9442 -0.5132 20 6 0.3148 -4.9724 -1.4595 21 6 -0.4821 -6.2639 -1.2651 22 6 -1.5278 -6.3762 -2.3444 23 1 -1.6151 -5.6038 -3.0942 24 6 -2.3725 -7.4655 -2.3752 25 7 -2.2660 -8.4063 -1.4625 26 14 -3.6692 -7.6042 -3.7126 27 1 -3.0085 -7.6250 -5.0424 28 1 -4.4426 -8.8579 -3.5240 29 1 -4.5877 -6.4401 -3.6344 30 1 -0.3632 0.0044 1.0277 31 1 -0.3633 0.8877 -0.5177 32 1 -0.3633 -0.8923 -0.5099 33 1 1.6574 2.1312 0.0004 34 1 4.1384 2.7299 -2.0824 35 1 2.8119 3.4202 -1.1154 36 1 4.3370 5.1131 -0.1840 37 1 4.3807 5.1773 -1.9627 38 1 6.2230 4.0290 0.9751 39 1 7.5387 3.3613 -0.0212 40 1 6.0145 1.5793 0.8529 41 1 6.0191 1.6482 -0.9261 42 1 5.3604 -0.0076 -0.0084 43 1 4.1297 -2.1380 -0.0011 44 1 0.5989 -2.4542 0.3663 45 1 1.9188 -6.8440 -0.3744 46 1 2.8104 -5.8982 -1.4117 47 1 0.8004 -4.9883 -2.4351 48 1 -0.3593 -4.1176 -1.4031 49 1 -0.9677 -6.2479 -0.2894 50 1 0.1919 -7.1186 -1.3214 51 1 -2.8605 -9.1724 -1.4839 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424137008.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:28 Heat of formation + Delta-G solvation = -73.002391 kcal Electronic energy + Delta-G solvation = -30222.640255 eV Core-core repulsion = 26120.627854 eV Total energy + Delta-G solvation = -4102.012401 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.97301 -41.09086 -39.51366 -37.44228 -36.93477 -35.07599 -34.84012 -33.59152 -32.25892 -31.70970 -30.71370 -28.51296 -28.04220 -27.16361 -25.62801 -25.16541 -23.49796 -22.56050 -22.27925 -21.10606 -21.02936 -19.05047 -18.65008 -18.19794 -18.15426 -17.19184 -16.68456 -16.59691 -16.28006 -16.18512 -16.12141 -15.83012 -15.76286 -15.72902 -15.18571 -14.92602 -14.82045 -14.60657 -14.47205 -14.27453 -13.95617 -13.73374 -13.49102 -13.27938 -13.01133 -12.93484 -12.78741 -12.73084 -12.67332 -12.54570 -12.42184 -11.94573 -11.84789 -11.76968 -11.68634 -11.58053 -11.32255 -10.84980 -10.71111 -10.55914 -10.08192 -9.72206 -9.67832 -8.52247 -8.21662 -6.31899 0.20898 0.38031 1.39919 1.41114 1.48758 1.51326 1.95097 2.39577 2.50179 2.82198 2.91468 3.12059 3.58141 3.69587 3.77295 3.81625 3.88476 3.91960 4.07397 4.08567 4.16338 4.18905 4.22499 4.24563 4.38363 4.46611 4.50940 4.61956 4.64054 4.66165 4.74896 4.79793 4.81002 4.81311 4.92584 4.97174 5.03284 5.06490 5.17499 5.25624 5.41981 5.45830 5.48208 5.64521 5.75087 5.79960 5.89757 6.02818 6.12366 6.20439 6.23422 6.39344 6.44258 6.83223 7.06149 7.37116 8.88669 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020590 B = 0.001897 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.567971 B =14757.754544 C =15442.868984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.090 4.090 3 C -0.117 4.117 4 C 0.086 3.914 5 N -0.486 5.486 6 C 0.018 3.982 7 C 0.063 3.937 8 O -0.405 6.405 9 C 0.064 3.936 10 C 0.010 3.990 11 C -0.160 4.160 12 C -0.120 4.120 13 C 0.111 3.889 14 N -0.658 5.658 15 C 0.526 3.474 16 O -0.546 6.546 17 C 0.084 3.916 18 H 0.114 0.886 19 N -0.829 5.829 20 C -0.122 4.122 21 C 0.030 3.970 22 C -0.545 4.545 23 H 0.055 0.945 24 C 0.006 3.994 25 N -0.925 5.925 26 Si 0.958 3.042 27 H -0.272 1.272 28 H -0.284 1.284 29 H -0.267 1.267 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.063 0.937 33 H 0.150 0.850 34 H 0.038 0.962 35 H 0.107 0.893 36 H 0.070 0.930 37 H 0.119 0.881 38 H 0.068 0.932 39 H 0.118 0.882 40 H 0.099 0.901 41 H 0.045 0.955 42 H 0.135 0.865 43 H 0.125 0.875 44 H 0.423 0.577 45 H 0.355 0.645 46 H 0.345 0.655 47 H 0.045 0.955 48 H 0.068 0.932 49 H 0.004 0.996 50 H 0.003 0.997 51 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.318 26.520 5.653 29.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.093 4.093 3 C -0.138 4.138 4 C -0.012 4.012 5 N -0.203 5.203 6 C -0.107 4.107 7 C -0.014 4.014 8 O -0.323 6.323 9 C -0.012 4.012 10 C -0.117 4.117 11 C -0.181 4.181 12 C -0.141 4.141 13 C 0.016 3.984 14 N -0.303 5.303 15 C 0.314 3.686 16 O -0.422 6.422 17 C -0.031 4.031 18 H 0.132 0.868 19 N -0.361 5.361 20 C -0.162 4.162 21 C -0.007 4.007 22 C -0.583 4.583 23 H 0.073 0.927 24 C -0.193 4.193 25 N -0.565 5.565 26 Si 0.783 3.217 27 H -0.198 1.198 28 H -0.209 1.209 29 H -0.192 1.192 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.081 0.919 33 H 0.168 0.832 34 H 0.057 0.943 35 H 0.125 0.875 36 H 0.088 0.912 37 H 0.137 0.863 38 H 0.086 0.914 39 H 0.135 0.865 40 H 0.117 0.883 41 H 0.064 0.936 42 H 0.153 0.847 43 H 0.143 0.857 44 H 0.261 0.739 45 H 0.170 0.830 46 H 0.158 0.842 47 H 0.063 0.937 48 H 0.087 0.913 49 H 0.023 0.977 50 H 0.021 0.979 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 12.417 27.054 6.250 30.417 hybrid contribution -1.592 -1.727 -1.683 2.889 sum 10.824 25.327 4.567 27.920 Atomic orbital electron populations 1.20834 0.88811 1.03905 1.03784 1.19761 0.97389 0.90589 1.01547 1.20637 0.91805 0.97892 1.03449 1.18999 0.93333 0.88743 1.00094 1.59520 1.05937 1.13662 1.41162 1.23024 1.02569 0.94701 0.90435 1.22846 0.79785 0.94697 1.04075 1.87981 1.24056 1.71148 1.49161 1.22812 0.99858 0.88647 0.89920 1.23033 0.86505 0.99578 1.02578 1.21253 1.00513 0.91189 1.05113 1.21206 0.93119 0.99123 1.00657 1.17816 0.91414 0.85352 1.03836 1.43491 1.19376 1.06494 1.60972 1.20960 0.85384 0.86015 0.76238 1.90598 1.22272 1.86494 1.42873 1.21399 0.91537 0.88720 1.01447 0.86805 1.58752 1.31861 1.05877 1.39613 1.22160 0.96763 1.00354 0.96911 1.18968 0.93841 0.92070 0.95840 1.21580 1.17325 1.06387 1.13026 0.92703 1.25852 0.99770 0.95486 0.98202 1.70048 1.39683 1.10861 1.35911 0.85611 0.79048 0.77637 0.79426 1.19754 1.20899 1.19160 0.89231 0.89377 0.91852 0.83230 0.94330 0.87525 0.91217 0.86349 0.91405 0.86455 0.88269 0.93631 0.84689 0.85739 0.73852 0.82960 0.84233 0.93656 0.91342 0.97730 0.97867 0.92749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.79 9.44 71.24 0.67 -1.11 16 2 C -0.09 -1.88 5.89 -19.76 -0.12 -1.99 16 3 C -0.12 -2.23 8.85 22.38 0.20 -2.03 16 4 C 0.09 1.79 5.64 38.17 0.22 2.00 16 5 N -0.49 -8.30 4.78 -694.15 -3.32 -11.61 16 6 C 0.02 0.26 5.41 86.32 0.47 0.73 16 7 C 0.06 0.74 7.01 72.02 0.50 1.24 16 8 O -0.40 -6.54 10.83 -148.98 -1.61 -8.15 16 9 C 0.06 0.81 7.01 72.01 0.50 1.31 16 10 C 0.01 0.16 4.33 86.31 0.37 0.53 16 11 C -0.16 -3.80 8.81 22.38 0.20 -3.61 16 12 C -0.12 -3.42 8.71 22.37 0.19 -3.23 16 13 C 0.11 2.91 6.42 38.10 0.24 3.16 16 14 N -0.66 -17.11 4.97 -303.34 -1.51 -18.62 16 15 C 0.53 16.84 6.88 87.66 0.60 17.44 16 16 O -0.55 -20.59 13.41 -3.08 -0.04 -20.64 16 17 C 0.08 2.72 3.21 44.17 0.14 2.87 16 18 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 19 N -0.83 -27.71 8.94 -171.80 -1.54 -29.24 16 20 C -0.12 -4.59 4.78 30.59 0.15 -4.44 16 21 C 0.03 1.43 4.74 29.85 0.14 1.57 16 22 C -0.55 -29.36 9.11 25.60 0.23 -29.13 16 23 H 0.05 2.88 7.74 -2.91 -0.02 2.85 16 24 C 0.01 0.31 5.46 84.65 0.46 0.77 16 25 N -0.93 -53.52 13.29 21.45 0.28 -53.24 16 26 Si 0.96 42.80 29.54 68.60 2.03 44.83 16 27 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 28 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 29 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 30 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.09 1.07 8.09 -2.39 -0.02 1.05 16 32 H 0.06 1.06 6.98 -2.38 -0.02 1.04 16 33 H 0.15 2.08 7.20 -2.91 -0.02 2.06 16 34 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.11 1.17 6.86 -2.39 -0.02 1.16 16 36 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 37 H 0.12 0.95 8.14 -2.39 -0.02 0.94 16 38 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.10 1.37 7.23 -2.39 -0.02 1.36 16 41 H 0.05 0.79 7.53 -2.39 -0.02 0.77 16 42 H 0.14 2.82 5.81 -2.91 -0.02 2.81 16 43 H 0.12 4.12 5.78 -2.91 -0.02 4.10 16 44 H 0.42 8.78 7.41 -92.71 -0.69 8.09 16 45 H 0.35 12.00 7.55 -89.69 -0.68 11.33 16 46 H 0.34 11.77 8.58 -89.70 -0.77 11.00 16 47 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 48 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 49 H 0.00 0.22 8.14 -2.38 -0.02 0.20 16 50 H 0.00 0.15 6.87 -2.39 -0.02 0.14 16 51 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -68.27 402.13 -1.68 -69.95 By element: Atomic # 1 Polarization: 41.81 SS G_CDS: -1.16 Total: 40.65 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: 5.18 Total: -13.92 kcal Atomic # 7 Polarization: -106.64 SS G_CDS: -6.07 Total: -112.71 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -1.65 Total: -28.79 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -68.27 -1.68 -69.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424137008.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.054 kcal (2) G-P(sol) polarization free energy of solvation -68.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds