Wall clock time and date at job start Wed Apr 1 2020 04:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38020 * 120.00761 * 2 1 4 4 C 1.38213 * 120.22435 * 180.27705 * 3 2 1 5 5 C 1.38992 * 120.22262 * 359.76563 * 4 3 2 6 6 N 1.39953 * 119.99585 * 179.97438 * 5 4 3 7 7 C 1.34776 * 120.00524 * 34.52239 * 6 5 4 8 8 O 1.21291 * 119.99597 * 5.27407 * 7 6 5 9 9 C 1.50698 * 120.00282 * 185.26370 * 7 6 5 10 10 H 1.09001 * 109.46731 * 40.00856 * 9 7 6 11 11 N 1.46900 * 109.46835 * 160.00169 * 9 7 6 12 12 C 1.52993 * 109.47258 * 280.00655 * 9 7 6 13 13 C 1.53004 * 109.47187 * 175.00201 * 12 9 7 14 14 C 1.50694 * 109.47151 * 179.97438 * 13 12 9 15 15 H 1.07993 * 120.00493 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99717 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00113 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99910 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.46779 * 90.00195 * 18 16 14 20 20 H 1.48497 * 109.47281 * 209.99881 * 18 16 14 21 21 H 1.48497 * 109.47373 * 330.00137 * 18 16 14 22 22 C 1.38595 * 119.99816 * 359.97438 * 5 4 3 23 23 C 1.39493 * 119.78196 * 359.97438 * 22 5 4 24 24 C 1.47860 * 120.10821 * 179.97438 * 23 22 5 25 25 O 1.21559 * 119.99857 * 173.81318 * 24 23 22 26 26 N 1.34771 * 120.00612 * 353.81158 * 24 23 22 27 27 C 1.46498 * 120.00453 * 180.02562 * 26 24 23 28 28 C 1.53000 * 109.47140 * 154.99924 * 27 26 24 29 29 C 1.53003 * 109.46889 * 275.00004 * 27 26 24 30 30 H 1.08992 * 109.47418 * 263.37645 * 1 2 3 31 31 H 1.09003 * 109.46665 * 23.37304 * 1 2 3 32 32 H 1.08999 * 109.47448 * 143.37111 * 1 2 3 33 33 H 1.07998 * 119.88669 * 359.97438 * 3 2 1 34 34 H 1.08004 * 119.88666 * 179.74514 * 4 3 2 35 35 H 0.97002 * 119.99393 * 214.52232 * 6 5 4 36 36 H 1.00897 * 110.99929 * 60.00716 * 11 9 7 37 37 H 1.00907 * 110.99558 * 183.96020 * 11 9 7 38 38 H 1.09005 * 109.47179 * 294.99438 * 12 9 7 39 39 H 1.08999 * 109.47452 * 54.99860 * 12 9 7 40 40 H 1.09005 * 109.46438 * 299.99691 * 13 12 9 41 41 H 1.08999 * 109.47202 * 59.99507 * 13 12 9 42 42 H 0.97004 * 120.00051 * 180.02562 * 17 16 14 43 43 H 1.07997 * 120.10576 * 179.97438 * 22 5 4 44 44 H 0.97008 * 119.99264 * 359.97438 * 26 24 23 45 45 H 1.08993 * 109.46922 * 34.99693 * 27 26 24 46 46 H 1.09009 * 109.47115 * 59.99934 * 28 27 26 47 47 H 1.09003 * 109.46848 * 179.97438 * 28 27 26 48 48 H 1.09000 * 109.47460 * 300.00154 * 28 27 26 49 49 H 1.09003 * 109.46786 * 180.02562 * 29 27 26 50 50 H 1.09004 * 109.46682 * 299.99784 * 29 27 26 51 51 H 1.08993 * 109.47285 * 59.99856 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1952 0.0000 4 6 3.5794 1.2004 -0.0058 5 6 4.2835 0.0021 -0.0067 6 7 5.6830 0.0129 -0.0131 7 6 6.3525 0.9810 0.6435 8 8 5.7468 1.7865 1.3183 9 6 7.8537 1.0625 0.5393 10 1 8.1588 0.8503 -0.4853 11 7 8.2978 2.4120 0.9129 12 6 8.4867 0.0378 1.4827 13 6 10.0042 0.0332 1.2866 14 6 10.6278 -0.9757 2.2162 15 1 10.0044 -1.5554 2.8807 16 6 11.9944 -1.1586 2.2183 17 7 12.7535 -0.4531 1.4088 18 14 12.7675 -2.4088 3.3712 19 1 12.8417 -3.7279 2.6930 20 1 14.1357 -1.9635 3.7386 21 1 11.9398 -2.5288 4.5982 22 6 3.5998 -1.2034 -0.0013 23 6 2.2049 -1.2088 0.0056 24 6 1.4681 -2.4907 0.0108 25 8 0.2584 -2.4960 0.1303 26 7 2.1376 -3.6534 -0.1169 27 6 1.4075 -4.9235 -0.1122 28 6 2.2197 -5.9814 -0.8619 29 6 1.1858 -5.3790 1.3315 30 1 -0.3634 -0.1185 1.0207 31 1 -0.3633 0.9434 -0.4077 32 1 -0.3634 -0.8247 -0.6131 33 1 1.6555 2.1295 -0.0004 34 1 4.1140 2.1389 -0.0099 35 1 6.1711 -0.6764 -0.4901 36 1 8.0268 2.6328 1.8594 37 1 9.2943 2.5118 0.7895 38 1 8.2546 0.3017 2.5145 39 1 8.0890 -0.9530 1.2627 40 1 10.2363 -0.2307 0.2548 41 1 10.4019 1.0239 1.5066 42 1 13.7150 -0.5821 1.4100 43 1 4.1452 -2.1356 -0.0024 44 1 3.1029 -3.6491 -0.2126 45 1 0.4435 -4.7902 -0.6032 46 1 3.1838 -6.1146 -0.3709 47 1 1.6766 -6.9265 -0.8581 48 1 2.3777 -5.6568 -1.8904 49 1 0.6430 -6.3243 1.3349 50 1 2.1499 -5.5123 1.8224 51 1 0.6072 -4.6254 1.8655 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424142430.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:15 Heat of formation + Delta-G solvation = -65.128574 kcal Electronic energy + Delta-G solvation = -30004.805985 eV Core-core repulsion = 25903.135018 eV Total energy + Delta-G solvation = -4101.670967 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.94767 -40.09366 -38.44283 -36.40315 -35.68765 -34.95395 -32.94333 -32.71081 -31.48827 -30.56341 -29.99366 -27.59720 -27.46517 -26.04468 -24.28531 -23.96907 -22.41475 -21.48810 -20.89389 -20.49433 -19.90548 -18.25030 -17.70195 -16.75992 -16.32448 -16.14005 -15.76380 -15.54415 -15.27340 -14.99419 -14.59419 -14.53389 -14.46785 -14.27648 -14.01015 -13.80367 -13.61396 -13.30492 -13.12661 -13.07925 -12.74064 -12.54293 -12.42330 -12.28653 -12.13577 -11.95305 -11.82007 -11.72105 -11.63768 -11.31595 -11.18054 -11.00795 -10.75159 -10.34655 -10.08890 -10.07959 -9.81587 -9.46999 -9.37172 -9.30983 -9.13249 -8.51105 -8.34080 -8.15346 -6.15351 -4.18876 0.67855 1.07164 2.53485 2.80262 2.83669 2.98373 3.22030 3.29484 3.32469 3.65705 4.33310 4.34262 4.48670 4.57271 4.68275 4.75929 4.78516 4.86327 5.01777 5.05301 5.14349 5.19992 5.20964 5.31058 5.35028 5.41178 5.42858 5.49532 5.53960 5.60427 5.63208 5.69613 5.75021 5.85921 5.90893 6.04111 6.13555 6.14734 6.24818 6.30312 6.39248 6.42898 6.75824 6.79572 7.20562 7.22898 7.41534 7.45433 7.53523 7.77829 7.81440 7.95596 8.16546 8.23464 8.87024 9.46560 10.95475 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009601 B = 0.002406 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2915.529503 B =11636.975904 C =14097.004533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.041 4.041 3 C -0.111 4.111 4 C -0.088 4.088 5 C 0.145 3.855 6 N -0.679 5.679 7 C 0.526 3.474 8 O -0.516 6.516 9 C 0.077 3.923 10 H 0.101 0.899 11 N -0.830 5.830 12 C -0.139 4.139 13 C 0.025 3.975 14 C -0.526 4.526 15 H 0.055 0.945 16 C 0.059 3.941 17 N -0.892 5.892 18 Si 0.893 3.107 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.274 1.274 22 C -0.112 4.112 23 C -0.126 4.126 24 C 0.564 3.436 25 O -0.532 6.532 26 N -0.725 5.725 27 C 0.137 3.863 28 C -0.162 4.162 29 C -0.165 4.165 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.092 0.908 33 H 0.132 0.868 34 H 0.140 0.860 35 H 0.413 0.587 36 H 0.347 0.653 37 H 0.357 0.643 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.019 0.981 41 H 0.018 0.982 42 H 0.262 0.738 43 H 0.128 0.872 44 H 0.400 0.600 45 H 0.089 0.911 46 H 0.062 0.938 47 H 0.073 0.927 48 H 0.062 0.938 49 H 0.065 0.935 50 H 0.058 0.942 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.043 -5.373 -6.996 23.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.043 4.043 3 C -0.130 4.130 4 C -0.108 4.108 5 C 0.050 3.950 6 N -0.325 5.325 7 C 0.314 3.686 8 O -0.389 6.389 9 C -0.039 4.039 10 H 0.119 0.881 11 N -0.363 5.363 12 C -0.178 4.178 13 C -0.012 4.012 14 C -0.564 4.564 15 H 0.073 0.927 16 C -0.143 4.143 17 N -0.531 5.531 18 Si 0.720 3.280 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.133 4.133 23 C -0.130 4.130 24 C 0.352 3.648 25 O -0.410 6.410 26 N -0.378 5.378 27 C 0.033 3.967 28 C -0.220 4.220 29 C -0.223 4.223 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.110 0.890 33 H 0.150 0.850 34 H 0.158 0.842 35 H 0.249 0.751 36 H 0.160 0.840 37 H 0.173 0.827 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.072 0.928 43 H 0.146 0.854 44 H 0.235 0.765 45 H 0.107 0.893 46 H 0.081 0.919 47 H 0.092 0.908 48 H 0.081 0.919 49 H 0.084 0.916 50 H 0.077 0.923 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -23.547 -4.489 -7.064 24.990 hybrid contribution 2.095 -1.626 1.150 2.890 sum -21.451 -6.114 -5.914 23.076 Atomic orbital electron populations 1.21019 0.90046 1.02741 1.03420 1.19985 0.96816 0.91355 0.96154 1.20951 0.93482 0.97631 1.00907 1.21404 0.94092 0.98061 0.97271 1.17583 0.83201 0.93558 1.00656 1.43658 1.04070 1.31176 1.53587 1.21173 0.90647 0.79335 0.77408 1.90663 1.69973 1.39806 1.38454 1.21484 0.88686 0.91674 1.02013 0.88106 1.58750 1.21493 1.23929 1.32117 1.22415 1.00610 0.96927 0.97888 1.19103 0.87203 0.97476 0.97467 1.21159 0.91987 1.21621 1.21616 0.92707 1.25009 0.97407 0.96132 0.95712 1.69942 1.05090 1.40436 1.37649 0.86583 0.78685 0.81491 0.81208 1.20586 1.21105 1.19866 1.20967 0.93122 0.96950 1.02310 1.19436 0.92581 0.93117 1.07839 1.18244 0.87032 0.83597 0.75894 1.90718 1.13698 1.87169 1.49407 1.46082 1.11024 1.05692 1.74955 1.20948 0.96565 0.82566 0.96615 1.22096 1.00686 0.98636 1.00581 1.22200 1.02223 1.01647 0.96264 0.90908 0.92530 0.88989 0.84996 0.84188 0.75059 0.84008 0.82720 0.92500 0.92508 0.96258 0.96330 0.92810 0.85407 0.76487 0.89338 0.91854 0.90830 0.91872 0.91608 0.92338 0.91985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.19 8.71 36.00 0.31 -0.88 16 2 C -0.04 -0.47 5.91 -104.20 -0.62 -1.08 16 3 C -0.11 -1.23 9.65 -39.67 -0.38 -1.61 16 4 C -0.09 -1.11 8.65 -39.31 -0.34 -1.45 16 5 C 0.14 1.74 6.25 -83.74 -0.52 1.22 16 6 N -0.68 -8.08 5.34 -9.89 -0.05 -8.13 16 7 C 0.53 7.92 6.81 -10.99 -0.07 7.84 16 8 O -0.52 -9.17 14.01 5.55 0.08 -9.09 16 9 C 0.08 1.18 3.21 -68.87 -0.22 0.96 16 10 H 0.10 1.44 8.14 -51.93 -0.42 1.01 16 11 N -0.83 -13.20 8.94 -5.66 -0.05 -13.25 16 12 C -0.14 -2.52 4.78 -26.73 -0.13 -2.65 16 13 C 0.02 0.57 4.74 -27.88 -0.13 0.43 16 14 C -0.53 -13.92 9.11 -34.44 -0.31 -14.23 16 15 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.89 -25.35 13.29 55.43 0.74 -24.61 16 18 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 19 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 20 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 21 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 22 C -0.11 -1.15 9.44 -38.98 -0.37 -1.52 16 23 C -0.13 -1.41 5.87 -104.99 -0.62 -2.02 16 24 C 0.56 6.24 7.66 -12.33 -0.09 6.15 16 25 O -0.53 -7.08 13.01 5.31 0.07 -7.01 16 26 N -0.72 -6.01 5.03 -54.75 -0.28 -6.29 16 27 C 0.14 1.01 3.18 -67.93 -0.22 0.80 16 28 C -0.16 -0.84 9.38 37.16 0.35 -0.49 16 29 C -0.16 -1.23 9.48 37.16 0.35 -0.88 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.47 8.04 -51.93 -0.42 0.05 16 32 H 0.09 1.05 5.88 -51.93 -0.31 0.74 16 33 H 0.13 1.18 8.05 -52.49 -0.42 0.76 16 34 H 0.14 1.93 6.49 -52.48 -0.34 1.59 16 35 H 0.41 3.80 8.82 -40.82 -0.36 3.44 16 36 H 0.35 5.62 8.58 -39.29 -0.34 5.28 16 37 H 0.36 5.73 7.55 -39.29 -0.30 5.43 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 42 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.13 0.97 6.45 -52.49 -0.34 0.63 16 44 H 0.40 2.56 6.67 -40.82 -0.27 2.29 16 45 H 0.09 0.76 7.58 -51.93 -0.39 0.37 16 46 H 0.06 0.31 8.14 -51.92 -0.42 -0.12 16 47 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 48 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 49 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 50 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 51 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 415.36 15.07 6.26 6.26 Total: -1.00 -32.12 415.36 -9.40 -41.52 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: -8.03 Total: 12.79 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -3.11 Total: -7.90 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: 0.36 Total: -52.28 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: 0.15 Total: -16.10 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -32.12 -9.40 -41.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424142430.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.612 kcal (2) G-P(sol) polarization free energy of solvation -32.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds