Wall clock time and date at job start Wed Apr 1 2020 04:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38020 * 120.00761 * 2 1 4 4 C 1.38213 * 120.22435 * 180.27705 * 3 2 1 5 5 C 1.38992 * 120.22262 * 359.76563 * 4 3 2 6 6 N 1.39953 * 119.99585 * 179.97438 * 5 4 3 7 7 C 1.34776 * 120.00524 * 34.52239 * 6 5 4 8 8 O 1.21291 * 119.99597 * 5.27407 * 7 6 5 9 9 C 1.50698 * 120.00282 * 185.26370 * 7 6 5 10 10 H 1.09001 * 109.46731 * 40.00856 * 9 7 6 11 11 N 1.46900 * 109.46835 * 160.00169 * 9 7 6 12 12 C 1.52993 * 109.47258 * 280.00655 * 9 7 6 13 13 C 1.53004 * 109.47187 * 175.00201 * 12 9 7 14 14 C 1.50694 * 109.47151 * 179.97438 * 13 12 9 15 15 H 1.07993 * 120.00493 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99717 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00113 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99910 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.46779 * 90.00195 * 18 16 14 20 20 H 1.48497 * 109.47281 * 209.99881 * 18 16 14 21 21 H 1.48497 * 109.47373 * 330.00137 * 18 16 14 22 22 C 1.38595 * 119.99816 * 359.97438 * 5 4 3 23 23 C 1.39493 * 119.78196 * 359.97438 * 22 5 4 24 24 C 1.47860 * 120.10821 * 179.97438 * 23 22 5 25 25 O 1.21559 * 119.99857 * 173.81318 * 24 23 22 26 26 N 1.34771 * 120.00612 * 353.81158 * 24 23 22 27 27 C 1.46498 * 120.00453 * 180.02562 * 26 24 23 28 28 C 1.53000 * 109.47140 * 154.99924 * 27 26 24 29 29 C 1.53003 * 109.46889 * 275.00004 * 27 26 24 30 30 H 1.08992 * 109.47418 * 263.37645 * 1 2 3 31 31 H 1.09003 * 109.46665 * 23.37304 * 1 2 3 32 32 H 1.08999 * 109.47448 * 143.37111 * 1 2 3 33 33 H 1.07998 * 119.88669 * 359.97438 * 3 2 1 34 34 H 1.08004 * 119.88666 * 179.74514 * 4 3 2 35 35 H 0.97002 * 119.99393 * 214.52232 * 6 5 4 36 36 H 1.00897 * 110.99929 * 60.00716 * 11 9 7 37 37 H 1.00907 * 110.99558 * 183.96020 * 11 9 7 38 38 H 1.09005 * 109.47179 * 294.99438 * 12 9 7 39 39 H 1.08999 * 109.47452 * 54.99860 * 12 9 7 40 40 H 1.09005 * 109.46438 * 299.99691 * 13 12 9 41 41 H 1.08999 * 109.47202 * 59.99507 * 13 12 9 42 42 H 0.97004 * 120.00051 * 180.02562 * 17 16 14 43 43 H 1.07997 * 120.10576 * 179.97438 * 22 5 4 44 44 H 0.97008 * 119.99264 * 359.97438 * 26 24 23 45 45 H 1.08993 * 109.46922 * 34.99693 * 27 26 24 46 46 H 1.09009 * 109.47115 * 59.99934 * 28 27 26 47 47 H 1.09003 * 109.46848 * 179.97438 * 28 27 26 48 48 H 1.09000 * 109.47460 * 300.00154 * 28 27 26 49 49 H 1.09003 * 109.46786 * 180.02562 * 29 27 26 50 50 H 1.09004 * 109.46682 * 299.99784 * 29 27 26 51 51 H 1.08993 * 109.47285 * 59.99856 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1952 0.0000 4 6 3.5794 1.2004 -0.0058 5 6 4.2835 0.0021 -0.0067 6 7 5.6830 0.0129 -0.0131 7 6 6.3525 0.9810 0.6435 8 8 5.7468 1.7865 1.3183 9 6 7.8537 1.0625 0.5393 10 1 8.1588 0.8503 -0.4853 11 7 8.2978 2.4120 0.9129 12 6 8.4867 0.0378 1.4827 13 6 10.0042 0.0332 1.2866 14 6 10.6278 -0.9757 2.2162 15 1 10.0044 -1.5554 2.8807 16 6 11.9944 -1.1586 2.2183 17 7 12.7535 -0.4531 1.4088 18 14 12.7675 -2.4088 3.3712 19 1 12.8417 -3.7279 2.6930 20 1 14.1357 -1.9635 3.7386 21 1 11.9398 -2.5288 4.5982 22 6 3.5998 -1.2034 -0.0013 23 6 2.2049 -1.2088 0.0056 24 6 1.4681 -2.4907 0.0108 25 8 0.2584 -2.4960 0.1303 26 7 2.1376 -3.6534 -0.1169 27 6 1.4075 -4.9235 -0.1122 28 6 2.2197 -5.9814 -0.8619 29 6 1.1858 -5.3790 1.3315 30 1 -0.3634 -0.1185 1.0207 31 1 -0.3633 0.9434 -0.4077 32 1 -0.3634 -0.8247 -0.6131 33 1 1.6555 2.1295 -0.0004 34 1 4.1140 2.1389 -0.0099 35 1 6.1711 -0.6764 -0.4901 36 1 8.0268 2.6328 1.8594 37 1 9.2943 2.5118 0.7895 38 1 8.2546 0.3017 2.5145 39 1 8.0890 -0.9530 1.2627 40 1 10.2363 -0.2307 0.2548 41 1 10.4019 1.0239 1.5066 42 1 13.7150 -0.5821 1.4100 43 1 4.1452 -2.1356 -0.0024 44 1 3.1029 -3.6491 -0.2126 45 1 0.4435 -4.7902 -0.6032 46 1 3.1838 -6.1146 -0.3709 47 1 1.6766 -6.9265 -0.8581 48 1 2.3777 -5.6568 -1.8904 49 1 0.6430 -6.3243 1.3349 50 1 2.1499 -5.5123 1.8224 51 1 0.6072 -4.6254 1.8655 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424142430.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:14 Heat of formation + Delta-G solvation = -86.801641 kcal Electronic energy + Delta-G solvation = -30005.745800 eV Core-core repulsion = 25903.135018 eV Total energy + Delta-G solvation = -4102.610782 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.90563 -41.08680 -39.38599 -37.26903 -36.99502 -36.00627 -34.84555 -33.48435 -32.42353 -31.68862 -31.32846 -28.68451 -28.09864 -27.35004 -25.58588 -25.10365 -23.16668 -22.83398 -21.76446 -21.59765 -21.02221 -19.15099 -19.01285 -18.21903 -17.59393 -16.95367 -16.68594 -16.58958 -16.42930 -16.17850 -16.04524 -15.76277 -15.41928 -15.13264 -15.09807 -14.74108 -14.65625 -14.58367 -14.34100 -14.00806 -13.75444 -13.49293 -13.35481 -13.29986 -13.06218 -12.93574 -12.92033 -12.84143 -12.69229 -12.52141 -12.45639 -12.27664 -11.90304 -11.80436 -11.71226 -11.33029 -11.28722 -10.90551 -10.63485 -10.55101 -10.19803 -9.97089 -9.67260 -9.10010 -8.21091 -6.30940 -0.21191 0.17293 1.39704 1.41267 1.45395 1.51355 1.84095 1.92018 2.15005 2.40270 2.77187 3.13154 3.58613 3.60460 3.72591 3.76113 3.94358 3.96528 4.11265 4.14078 4.17160 4.22361 4.29790 4.33397 4.42432 4.65721 4.68148 4.73296 4.74659 4.81370 4.84072 4.86540 4.93680 5.00779 5.01430 5.09413 5.13924 5.27074 5.30690 5.32613 5.37356 5.48130 5.52434 5.59724 5.66909 5.81847 5.87350 6.04862 6.21905 6.36690 6.46212 6.49889 6.85111 7.06570 7.17637 7.38385 8.89532 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009601 B = 0.002406 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2915.529503 B =11636.975904 C =14097.004533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.050 4.050 3 C -0.110 4.110 4 C -0.102 4.102 5 C 0.128 3.872 6 N -0.662 5.662 7 C 0.529 3.471 8 O -0.546 6.546 9 C 0.084 3.916 10 H 0.117 0.883 11 N -0.830 5.830 12 C -0.122 4.122 13 C 0.029 3.971 14 C -0.543 4.543 15 H 0.055 0.945 16 C 0.006 3.994 17 N -0.926 5.926 18 Si 0.956 3.044 19 H -0.271 1.271 20 H -0.285 1.285 21 H -0.268 1.268 22 C -0.099 4.099 23 C -0.134 4.134 24 C 0.560 3.440 25 O -0.559 6.559 26 N -0.713 5.713 27 C 0.134 3.866 28 C -0.155 4.155 29 C -0.162 4.162 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.150 0.850 34 H 0.125 0.875 35 H 0.427 0.573 36 H 0.344 0.656 37 H 0.355 0.645 38 H 0.044 0.956 39 H 0.071 0.929 40 H 0.005 0.995 41 H 0.002 0.998 42 H 0.263 0.737 43 H 0.157 0.843 44 H 0.410 0.590 45 H 0.074 0.926 46 H 0.070 0.930 47 H 0.085 0.915 48 H 0.065 0.935 49 H 0.080 0.920 50 H 0.063 0.937 51 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.419 -7.175 -7.199 24.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.051 4.051 3 C -0.129 4.129 4 C -0.122 4.122 5 C 0.034 3.966 6 N -0.309 5.309 7 C 0.317 3.683 8 O -0.422 6.422 9 C -0.031 4.031 10 H 0.135 0.865 11 N -0.362 5.362 12 C -0.162 4.162 13 C -0.008 4.008 14 C -0.581 4.581 15 H 0.073 0.927 16 C -0.192 4.192 17 N -0.566 5.566 18 Si 0.781 3.219 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.193 1.193 22 C -0.120 4.120 23 C -0.138 4.138 24 C 0.349 3.651 25 O -0.440 6.440 26 N -0.366 5.366 27 C 0.031 3.969 28 C -0.213 4.213 29 C -0.220 4.220 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.168 0.832 34 H 0.143 0.857 35 H 0.266 0.734 36 H 0.158 0.842 37 H 0.170 0.830 38 H 0.063 0.937 39 H 0.090 0.910 40 H 0.023 0.977 41 H 0.020 0.980 42 H 0.072 0.928 43 H 0.174 0.826 44 H 0.248 0.752 45 H 0.092 0.908 46 H 0.089 0.911 47 H 0.103 0.897 48 H 0.084 0.916 49 H 0.099 0.901 50 H 0.082 0.918 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -23.917 -6.339 -7.292 25.795 hybrid contribution 2.151 -1.080 1.188 2.684 sum -21.766 -7.419 -6.104 23.792 Atomic orbital electron populations 1.20958 0.89468 1.03309 1.02933 1.20210 0.97402 0.91608 0.95907 1.21110 0.93019 0.98433 1.00310 1.21409 0.94767 0.97813 0.98217 1.17700 0.83037 0.94070 1.01831 1.43420 1.04208 1.30548 1.52740 1.20957 0.90258 0.79643 0.77394 1.90659 1.70345 1.41194 1.39966 1.21407 0.89140 0.90498 1.02043 0.86528 1.58763 1.21285 1.24194 1.31976 1.22163 0.97452 0.98686 0.97927 1.18973 0.90299 0.95675 0.95826 1.21623 0.92466 1.22101 1.21957 0.92654 1.25833 0.98136 0.98027 0.97242 1.70052 1.05329 1.42026 1.39240 0.85582 0.77611 0.79335 0.79343 1.19634 1.21052 1.19295 1.21145 0.92787 0.97471 1.00589 1.19598 0.93052 0.93285 1.07850 1.18297 0.86755 0.84224 0.75845 1.90710 1.14831 1.87561 1.50896 1.46054 1.11599 1.05324 1.73595 1.21050 0.96418 0.82666 0.96814 1.22053 1.00739 0.98175 1.00310 1.22169 1.02263 1.01606 0.95942 0.91475 0.90615 0.90143 0.83198 0.85697 0.73359 0.84248 0.82978 0.93725 0.91028 0.97666 0.97975 0.92772 0.82550 0.75231 0.90774 0.91050 0.89656 0.91637 0.90077 0.91829 0.94426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.20 8.71 71.24 0.62 -1.58 16 2 C -0.05 -1.08 5.91 -19.59 -0.12 -1.19 16 3 C -0.11 -2.35 9.65 22.21 0.21 -2.13 16 4 C -0.10 -2.50 8.65 22.44 0.19 -2.30 16 5 C 0.13 2.89 6.25 38.11 0.24 3.13 16 6 N -0.66 -14.57 5.34 -303.60 -1.62 -16.19 16 7 C 0.53 15.35 6.81 87.66 0.60 15.94 16 8 O -0.55 -19.20 14.01 -3.06 -0.04 -19.24 16 9 C 0.08 2.52 3.21 44.17 0.14 2.66 16 10 H 0.12 3.13 8.14 -2.39 -0.02 3.11 16 11 N -0.83 -26.23 8.94 -171.81 -1.54 -27.76 16 12 C -0.12 -4.34 4.78 30.59 0.15 -4.19 16 13 C 0.03 1.36 4.74 29.85 0.14 1.50 16 14 C -0.54 -28.58 9.11 25.60 0.23 -28.34 16 15 H 0.06 2.83 7.74 -2.91 -0.02 2.81 16 16 C 0.01 0.33 5.46 84.66 0.46 0.80 16 17 N -0.93 -52.84 13.29 21.45 0.28 -52.55 16 18 Si 0.96 42.08 29.54 68.60 2.03 44.10 16 19 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 20 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 21 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 22 C -0.10 -1.84 9.44 22.66 0.21 -1.62 16 23 C -0.13 -2.82 5.87 -20.10 -0.12 -2.94 16 24 C 0.56 11.89 7.66 86.79 0.67 12.56 16 25 O -0.56 -14.86 13.01 -3.90 -0.05 -14.91 16 26 N -0.71 -10.63 5.03 -445.40 -2.24 -12.87 16 27 C 0.13 1.79 3.18 44.99 0.14 1.93 16 28 C -0.16 -1.22 9.38 71.98 0.68 -0.55 16 29 C -0.16 -2.20 9.48 71.98 0.68 -1.52 16 30 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.08 1.17 8.04 -2.39 -0.02 1.15 16 32 H 0.08 1.82 5.88 -2.39 -0.01 1.81 16 33 H 0.15 2.51 8.05 -2.91 -0.02 2.49 16 34 H 0.13 3.46 6.49 -2.91 -0.02 3.44 16 35 H 0.43 6.76 8.82 -92.71 -0.82 5.95 16 36 H 0.34 11.19 8.58 -89.70 -0.77 10.42 16 37 H 0.35 11.45 7.55 -89.69 -0.68 10.77 16 38 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 39 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.00 0.24 8.14 -2.38 -0.02 0.22 16 41 H 0.00 0.10 6.87 -2.39 -0.02 0.08 16 42 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 43 H 0.16 1.87 6.45 -2.91 -0.02 1.85 16 44 H 0.41 4.19 6.67 -92.70 -0.62 3.58 16 45 H 0.07 1.23 7.58 -2.39 -0.02 1.21 16 46 H 0.07 0.47 8.14 -2.38 -0.02 0.46 16 47 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 48 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 49 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 50 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 51 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -69.17 415.36 0.06 -69.11 By element: Atomic # 1 Polarization: 40.08 SS G_CDS: -1.90 Total: 38.18 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: 5.13 Total: -7.86 kcal Atomic # 7 Polarization: -104.27 SS G_CDS: -5.11 Total: -109.38 kcal Atomic # 8 Polarization: -34.06 SS G_CDS: -0.09 Total: -34.15 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.10 kcal Total: -69.17 0.06 -69.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424142430.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.693 kcal (2) G-P(sol) polarization free energy of solvation -69.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds