Wall clock time and date at job start Wed Apr 1 2020 05:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38313 * 119.96062 * 2 1 4 4 C 1.38280 * 120.15265 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.96258 * 179.97438 * 4 3 2 6 6 N 1.46892 * 109.46934 * 89.99986 * 5 4 3 7 7 C 1.38117 * 120.07252 * 359.97438 * 4 3 2 8 8 C 1.38906 * 119.92438 * 0.02562 * 7 4 3 9 9 N 1.39732 * 120.07523 * 179.97438 * 8 7 4 10 10 C 1.34772 * 119.99754 * 33.34640 * 9 8 7 11 11 O 1.21380 * 120.00462 * 5.27483 * 10 9 8 12 12 C 1.49356 * 119.99980 * 185.27462 * 10 9 8 13 13 O 1.21360 * 120.00039 * 359.97438 * 12 10 9 14 14 N 1.34773 * 120.00003 * 179.97438 * 12 10 9 15 15 C 1.46506 * 120.00221 * 179.97438 * 14 12 10 16 16 C 1.52995 * 109.47182 * 180.02562 * 15 14 12 17 17 C 1.53002 * 109.47148 * 300.00066 * 16 15 14 18 18 C 1.52998 * 109.47348 * 60.00448 * 16 15 14 19 19 C 1.53004 * 109.47225 * 179.97438 * 16 15 14 20 20 C 1.50695 * 109.47439 * 179.97438 * 19 16 15 21 21 H 1.07995 * 120.00077 * 0.02562 * 20 19 16 22 22 C 1.37878 * 119.99886 * 179.97438 * 20 19 16 23 23 N 1.31515 * 120.00201 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99671 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.46758 * 90.00636 * 24 22 20 26 26 H 1.48499 * 109.47026 * 210.00483 * 24 22 20 27 27 H 1.48500 * 109.47175 * 330.00601 * 24 22 20 28 28 C 1.38069 * 119.96216 * 179.97438 * 2 1 3 29 29 H 1.09006 * 109.46819 * 90.00263 * 1 2 3 30 30 H 1.08996 * 109.47372 * 210.00105 * 1 2 3 31 31 H 1.08996 * 109.47355 * 330.00541 * 1 2 3 32 32 H 1.07999 * 119.92852 * 0.27281 * 3 2 1 33 33 H 1.09002 * 109.46635 * 210.00208 * 5 4 3 34 34 H 1.08996 * 109.46870 * 330.00031 * 5 4 3 35 35 H 1.00903 * 110.99965 * 180.02562 * 6 5 4 36 36 H 1.00900 * 111.00259 * 303.95492 * 6 5 4 37 37 H 1.07996 * 120.03585 * 179.97438 * 7 4 3 38 38 H 0.97002 * 120.00140 * 213.34330 * 9 8 7 39 39 H 0.97008 * 120.00371 * 0.02562 * 14 12 10 40 40 H 1.08997 * 109.46755 * 300.00569 * 15 14 12 41 41 H 1.08999 * 109.46862 * 60.00193 * 15 14 12 42 42 H 1.09000 * 109.47200 * 60.00438 * 17 16 15 43 43 H 1.09007 * 109.46737 * 179.97438 * 17 16 15 44 44 H 1.08998 * 109.46942 * 299.99729 * 17 16 15 45 45 H 1.08998 * 109.47406 * 59.99874 * 18 16 15 46 46 H 1.09000 * 109.47212 * 180.02562 * 18 16 15 47 47 H 1.09000 * 109.47016 * 299.99572 * 18 16 15 48 48 H 1.08994 * 109.47107 * 300.00863 * 19 16 15 49 49 H 1.09007 * 109.46726 * 60.00083 * 19 16 15 50 50 H 0.96994 * 119.99750 * 179.97438 * 23 22 20 51 51 H 1.08002 * 120.04033 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1983 0.0000 4 6 3.5805 1.2029 0.0005 5 6 4.3288 2.5110 -0.0001 6 7 4.5714 2.9370 1.3847 7 6 4.2766 0.0100 0.0016 8 6 3.5861 -1.1952 0.0016 9 7 4.2871 -2.4040 0.0021 10 6 5.4684 -2.4975 0.6442 11 8 5.8777 -1.5627 1.3015 12 6 6.2740 -3.7514 0.5470 13 8 5.8646 -4.6862 -0.1098 14 7 7.4554 -3.8448 1.1887 15 6 8.2454 -5.0749 1.0938 16 6 9.5312 -4.9194 1.9083 17 6 10.3452 -3.7469 1.3574 18 6 9.1781 -4.6519 3.3727 19 6 10.3559 -6.2044 1.8097 20 6 11.6227 -6.0511 2.6114 21 1 11.8197 -5.1295 3.1388 22 6 12.5297 -7.0878 2.6724 23 7 12.2895 -8.2102 2.0305 24 14 14.0996 -6.8979 3.6668 25 1 13.8613 -7.3537 5.0599 26 1 15.1755 -7.7183 3.0547 27 1 14.5100 -5.4707 3.6762 28 6 2.1966 -1.1962 0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3634 0.8900 0.5137 32 1 1.6560 2.1325 0.0045 33 1 5.2819 2.3841 -0.5135 34 1 3.7369 3.2679 -0.5146 35 1 5.0718 3.8127 1.4112 36 1 3.7065 2.9993 1.9006 37 1 5.3566 0.0143 0.0016 38 1 3.9236 -3.1757 -0.4596 39 1 7.7825 -3.0977 1.7140 40 1 7.6656 -5.9102 1.4866 41 1 8.4966 -5.2658 0.0505 42 1 9.7575 -2.8316 1.4281 43 1 11.2611 -3.6359 1.9380 44 1 10.5968 -3.9376 0.3141 45 1 8.5983 -5.4872 3.7652 46 1 10.0942 -4.5406 3.9529 47 1 8.5904 -3.7366 3.4434 48 1 9.7758 -7.0395 2.2023 49 1 10.6075 -6.3955 0.7665 50 1 12.9278 -8.9393 2.0731 51 1 1.6566 -2.1315 0.0005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424467944.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:37 Heat of formation + Delta-G solvation = -84.103326 kcal Electronic energy + Delta-G solvation = -29863.096335 eV Core-core repulsion = 25760.602561 eV Total energy + Delta-G solvation = -4102.493774 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.22508 -40.79928 -39.62813 -38.68400 -36.73735 -35.74082 -35.20537 -33.94766 -32.81606 -30.96177 -29.23398 -28.27033 -27.99308 -27.82476 -26.08477 -26.04626 -24.60889 -22.55930 -21.94000 -21.20417 -20.37293 -19.26299 -18.37606 -18.13705 -17.72105 -17.23818 -17.05574 -16.83783 -16.52996 -16.44952 -16.22405 -15.69168 -15.41779 -15.35581 -14.90643 -14.76555 -14.47102 -14.40051 -14.18464 -13.98435 -13.94905 -13.78394 -13.52602 -13.13736 -13.00489 -12.88592 -12.84475 -12.72439 -12.62742 -12.43862 -12.34440 -12.24304 -12.00221 -11.99163 -11.56787 -11.41981 -11.12621 -10.90220 -10.71880 -10.50058 -10.32005 -9.71699 -9.52788 -9.19073 -8.13383 -6.20327 -0.11608 0.35246 0.55688 1.14986 1.43151 1.43606 1.53764 1.98765 2.43143 2.50729 2.72224 3.21260 3.25940 3.70002 3.81319 3.88861 3.94656 4.04007 4.14665 4.18777 4.21543 4.34329 4.40672 4.58433 4.64496 4.67849 4.68311 4.69715 4.78730 4.89142 4.89509 4.93083 4.98594 5.10771 5.16230 5.19527 5.22791 5.35136 5.41033 5.49354 5.50942 5.55015 5.56252 5.62149 5.78458 5.81295 5.90636 6.00696 6.21859 6.22190 6.32772 6.59822 6.60187 6.80090 6.94170 7.46996 8.98780 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020544 B = 0.001869 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.632597 B =14978.915421 C =15954.082544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.068 4.068 3 C -0.126 4.126 4 C -0.071 4.071 5 C 0.104 3.896 6 N -0.857 5.857 7 C -0.125 4.125 8 C 0.127 3.873 9 N -0.635 5.635 10 C 0.513 3.487 11 O -0.512 6.512 12 C 0.507 3.493 13 O -0.543 6.543 14 N -0.677 5.677 15 C 0.137 3.863 16 C -0.066 4.066 17 C -0.125 4.125 18 C -0.126 4.126 19 C 0.042 3.958 20 C -0.514 4.514 21 H 0.070 0.930 22 C -0.004 4.004 23 N -0.936 5.936 24 Si 0.956 3.044 25 H -0.277 1.277 26 H -0.289 1.289 27 H -0.262 1.262 28 C -0.143 4.143 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.145 0.855 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.354 0.646 36 H 0.347 0.653 37 H 0.113 0.887 38 H 0.430 0.570 39 H 0.418 0.582 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.057 0.943 44 H 0.043 0.957 45 H 0.043 0.957 46 H 0.057 0.943 47 H 0.061 0.939 48 H -0.008 1.008 49 H -0.008 1.008 50 H 0.259 0.741 51 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.840 22.768 -4.936 34.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.069 4.069 3 C -0.145 4.145 4 C -0.072 4.072 5 C -0.026 4.026 6 N -0.389 5.389 7 C -0.146 4.146 8 C 0.034 3.966 9 N -0.282 5.282 10 C 0.295 3.705 11 O -0.387 6.387 12 C 0.287 3.713 13 O -0.421 6.421 14 N -0.330 5.330 15 C 0.014 3.986 16 C -0.066 4.066 17 C -0.183 4.183 18 C -0.183 4.183 19 C 0.004 3.996 20 C -0.552 4.552 21 H 0.088 0.912 22 C -0.201 4.201 23 N -0.577 5.577 24 Si 0.782 3.218 25 H -0.202 1.202 26 H -0.215 1.215 27 H -0.186 1.186 28 C -0.163 4.163 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.163 0.837 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.168 0.832 36 H 0.160 0.840 37 H 0.131 0.869 38 H 0.270 0.730 39 H 0.257 0.743 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.076 0.924 47 H 0.080 0.920 48 H 0.010 0.990 49 H 0.010 0.990 50 H 0.068 0.932 51 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -24.256 21.907 -4.904 33.050 hybrid contribution 0.779 -0.073 0.104 0.789 sum -23.477 21.834 -4.800 32.418 Atomic orbital electron populations 1.20844 0.88552 1.03911 1.03470 1.20014 0.97589 0.91806 0.97457 1.21197 0.92832 0.98774 1.01675 1.19818 0.94023 0.94471 0.98850 1.20668 0.99105 0.92305 0.90511 1.58603 1.28319 1.38835 1.13165 1.20961 1.00100 0.91372 1.02176 1.17886 0.91709 0.84757 1.02272 1.43059 1.19682 1.13728 1.51756 1.20170 0.82533 0.87960 0.79871 1.90818 1.69727 1.39381 1.38767 1.19981 0.82800 0.87642 0.80915 1.90767 1.70608 1.39616 1.41136 1.45877 1.18985 1.19014 1.49168 1.21526 0.91431 0.85131 1.00547 1.20740 0.92769 0.97648 0.95466 1.21729 1.00011 0.96165 1.00346 1.21731 1.01241 1.00391 0.94920 1.18955 0.93894 0.91449 0.95285 1.21582 1.04123 1.00053 1.29465 0.91184 1.25904 1.01841 0.95254 0.97086 1.70103 1.37601 1.05424 1.44547 0.85571 0.79146 0.78441 0.78625 1.20246 1.21519 1.18612 1.21039 0.90924 1.00025 1.04342 0.89838 0.90785 0.90184 0.83710 0.91002 0.92372 0.83176 0.83995 0.86875 0.73026 0.74314 0.91727 0.91747 0.91976 0.92443 0.93793 0.93789 0.92403 0.91990 0.98981 0.98982 0.93173 0.83697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 10.01 71.24 0.71 -0.07 16 2 C -0.07 -0.90 5.88 -19.89 -0.12 -1.02 16 3 C -0.13 -1.70 9.35 22.30 0.21 -1.49 16 4 C -0.07 -1.24 5.39 -19.88 -0.11 -1.35 16 5 C 0.10 1.48 6.91 85.56 0.59 2.07 16 6 N -0.86 -12.17 9.61 -190.02 -1.83 -14.00 16 7 C -0.13 -2.86 8.31 22.40 0.19 -2.68 16 8 C 0.13 2.68 6.28 38.21 0.24 2.92 16 9 N -0.64 -13.80 5.32 -304.83 -1.62 -15.42 16 10 C 0.51 13.64 7.62 87.24 0.67 14.30 16 11 O -0.51 -15.49 14.16 -3.34 -0.05 -15.54 16 12 C 0.51 14.81 7.89 87.24 0.69 15.49 16 13 O -0.54 -17.95 16.48 -3.28 -0.05 -18.01 16 14 N -0.68 -19.81 4.95 -464.51 -2.30 -22.11 16 15 C 0.14 4.68 4.56 86.38 0.39 5.08 16 16 C -0.07 -2.48 0.54 -52.18 -0.03 -2.50 16 17 C -0.13 -4.33 8.05 71.98 0.58 -3.75 16 18 C -0.13 -4.34 8.05 71.98 0.58 -3.77 16 19 C 0.04 2.08 4.04 29.85 0.12 2.20 16 20 C -0.51 -27.39 7.65 25.60 0.20 -27.19 16 21 H 0.07 3.53 5.68 -2.91 -0.02 3.51 16 22 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 23 N -0.94 -56.23 13.29 21.45 0.28 -55.95 16 24 Si 0.96 43.67 29.54 68.60 2.03 45.69 16 25 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 26 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 27 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 28 C -0.14 -2.29 9.62 22.40 0.22 -2.08 16 29 H 0.08 0.44 8.14 -2.38 -0.02 0.42 16 30 H 0.07 0.46 8.08 -2.39 -0.02 0.44 16 31 H 0.08 0.39 8.08 -2.39 -0.02 0.37 16 32 H 0.15 1.17 8.06 -2.91 -0.02 1.15 16 33 H 0.07 1.14 8.08 -2.39 -0.02 1.12 16 34 H 0.06 0.56 8.08 -2.39 -0.02 0.54 16 35 H 0.35 3.57 9.08 -89.69 -0.81 2.75 16 36 H 0.35 4.10 8.99 -89.69 -0.81 3.30 16 37 H 0.11 3.06 6.42 -2.91 -0.02 3.04 16 38 H 0.43 7.77 8.30 -92.71 -0.77 7.00 16 39 H 0.42 11.27 5.63 -92.70 -0.52 10.75 16 40 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.06 1.76 6.86 -2.39 -0.02 1.74 16 43 H 0.06 2.13 6.62 -2.38 -0.02 2.11 16 44 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.06 2.14 6.62 -2.39 -0.02 2.12 16 47 H 0.06 1.76 6.86 -2.39 -0.02 1.74 16 48 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 49 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 50 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 51 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -69.19 415.07 0.13 -69.06 By element: Atomic # 1 Polarization: 31.77 SS G_CDS: -1.92 Total: 29.85 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: 5.59 Total: -3.58 kcal Atomic # 7 Polarization: -102.02 SS G_CDS: -5.46 Total: -107.48 kcal Atomic # 8 Polarization: -33.45 SS G_CDS: -0.10 Total: -33.55 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Total: -69.19 0.13 -69.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424467944.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.040 kcal (2) G-P(sol) polarization free energy of solvation -69.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds