Wall clock time and date at job start Wed Apr 1 2020 04:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38236 * 120.00006 * 2 1 4 4 C 1.38231 * 119.99905 * 180.02562 * 3 2 1 5 5 C 1.38239 * 120.00121 * 359.97438 * 4 3 2 6 6 C 1.50695 * 120.00093 * 179.97438 * 5 4 3 7 7 H 1.09005 * 109.47023 * 19.99627 * 6 5 4 8 8 C 1.53001 * 109.46872 * 260.00157 * 6 5 4 9 9 N 1.46901 * 109.47522 * 61.77403 * 8 6 5 10 10 C 1.47016 * 110.99836 * 53.56119 * 9 8 6 11 11 C 1.53098 * 109.25699 * 182.35413 * 10 9 8 12 12 O 1.43013 * 109.29213 * 303.22013 * 11 10 9 13 13 C 1.43018 * 113.73870 * 58.64707 * 12 11 10 14 14 C 1.47007 * 111.00250 * 177.24613 * 9 8 6 15 15 N 1.46500 * 109.47384 * 140.00051 * 6 5 4 16 16 C 1.34779 * 119.99840 * 208.73250 * 15 6 5 17 17 O 1.21584 * 120.00178 * 354.98210 * 16 15 6 18 18 N 1.34776 * 119.99831 * 174.97725 * 16 15 6 19 19 C 1.46499 * 120.00183 * 185.01674 * 18 16 15 20 20 C 1.50696 * 109.47156 * 184.95609 * 19 18 16 21 21 H 1.07997 * 120.00545 * 0.02562 * 20 19 18 22 22 C 1.37888 * 119.99988 * 179.97438 * 20 19 18 23 23 N 1.31511 * 119.99497 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00063 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47147 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46959 * 120.00031 * 24 22 20 27 27 H 1.48498 * 109.47199 * 240.00196 * 24 22 20 28 28 C 1.38237 * 119.99886 * 0.25479 * 5 4 3 29 29 C 1.38230 * 119.99833 * 359.49629 * 28 5 4 30 30 H 1.09004 * 109.46965 * 90.00055 * 1 2 3 31 31 H 1.09000 * 109.47176 * 210.00089 * 1 2 3 32 32 H 1.08998 * 109.47516 * 330.00149 * 1 2 3 33 33 H 1.08003 * 119.99795 * 359.97438 * 3 2 1 34 34 H 1.08006 * 119.99940 * 179.97438 * 4 3 2 35 35 H 1.08998 * 109.47088 * 301.76407 * 8 6 5 36 36 H 1.09004 * 109.46950 * 181.77076 * 8 6 5 37 37 H 1.09003 * 109.46936 * 62.44030 * 10 9 8 38 38 H 1.09000 * 109.54435 * 302.31180 * 10 9 8 39 39 H 1.08999 * 109.50851 * 183.25880 * 11 10 9 40 40 H 1.09001 * 109.50591 * 63.17255 * 11 10 9 41 41 H 1.08995 * 109.50747 * 61.26403 * 13 12 11 42 42 H 1.09002 * 109.50921 * 181.35208 * 13 12 11 43 43 H 1.09001 * 109.50700 * 57.66971 * 14 9 8 44 44 H 1.09000 * 109.50649 * 297.53768 * 14 9 8 45 45 H 0.96998 * 119.99681 * 28.73089 * 15 6 5 46 46 H 0.97001 * 119.99747 * 5.02213 * 18 16 15 47 47 H 1.09005 * 109.47182 * 304.95797 * 19 18 16 48 48 H 1.09002 * 109.47150 * 64.95851 * 19 18 16 49 49 H 0.97005 * 119.99690 * 179.97438 * 23 22 20 50 50 H 1.07997 * 119.99873 * 179.72734 * 28 5 4 51 51 H 1.08008 * 120.00141 * 180.22568 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.2717 0.0000 -0.0005 6 6 5.7786 -0.0001 -0.0017 7 1 6.1422 0.9658 0.3490 8 6 6.2875 -0.2512 -1.4226 9 7 5.8325 0.8321 -2.3044 10 6 6.2099 2.1458 -1.7629 11 6 5.6667 3.2449 -2.6799 12 8 6.1628 3.0420 -4.0058 13 6 5.8122 1.7726 -4.5637 14 6 6.3578 0.6586 -3.6664 15 7 6.2677 -1.0577 0.8862 16 6 7.4578 -0.9221 1.5041 17 8 8.1667 0.0338 1.2550 18 7 7.8620 -1.8460 2.3982 19 6 9.1027 -1.6437 3.1506 20 6 9.3891 -2.8655 3.9849 21 1 8.7147 -3.7086 3.9573 22 6 10.5128 -2.9075 4.7830 23 7 11.3347 -1.8814 4.8155 24 14 10.8682 -4.4222 5.8167 25 1 9.7990 -5.4302 5.6018 26 1 12.1777 -4.9977 5.4176 27 1 10.9106 -4.0433 7.2519 28 6 3.5805 -1.1972 -0.0053 29 6 2.1982 -1.1972 0.0004 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 1.6581 2.1325 -0.0004 34 1 4.1205 2.1325 -0.0010 35 1 5.8982 -1.2026 -1.7851 36 1 7.3770 -0.2825 -1.4181 37 1 7.2962 2.2189 -1.7110 38 1 5.7884 2.2634 -0.7645 39 1 5.9931 4.2184 -2.3141 40 1 4.5774 3.2060 -2.6889 41 1 4.7273 1.6902 -4.6274 42 1 6.2433 1.6817 -5.5607 43 1 6.0443 -0.3096 -4.0568 44 1 7.4464 0.7083 -3.6456 45 1 5.7350 -1.8556 1.0294 46 1 7.3315 -2.6450 2.5434 47 1 9.9259 -1.4771 2.4558 48 1 8.9954 -0.7761 3.8016 49 1 12.1251 -1.9108 5.3772 50 1 4.1205 -2.1325 -0.0098 51 1 1.6581 -2.1325 0.0004 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426442147.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:20 Heat of formation + Delta-G solvation = -44.966646 kcal Electronic energy + Delta-G solvation = -31041.971266 eV Core-core repulsion = 26941.174585 eV Total energy + Delta-G solvation = -4100.796680 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 2.59 seconds Orbital eigenvalues (eV) -40.46066 -39.34524 -38.92131 -36.57741 -34.68552 -34.06721 -32.64889 -32.12744 -31.47096 -30.91585 -29.69547 -27.64089 -26.88681 -25.22604 -24.29081 -22.99812 -22.84299 -22.09762 -20.84245 -20.31903 -19.84454 -18.29379 -17.18637 -16.44846 -16.34500 -15.87604 -15.64103 -15.45096 -15.29288 -15.17307 -14.99613 -14.82915 -14.63374 -14.28685 -13.97225 -13.93322 -13.60731 -13.33320 -13.24830 -13.02460 -12.82113 -12.44373 -12.34897 -12.05172 -11.94935 -11.90200 -11.79428 -11.55202 -11.31219 -11.15582 -10.93508 -10.91424 -10.86940 -10.55901 -10.31186 -9.87510 -9.48723 -9.36456 -8.99438 -8.87901 -8.72095 -8.56725 -8.48188 -7.79218 -6.16179 -4.22549 1.23449 1.34181 3.14731 3.23481 3.30900 3.34042 3.61474 3.67943 3.79712 3.93650 4.32556 4.53587 4.65665 4.68490 4.77281 4.82513 4.86261 4.89351 4.98090 5.04563 5.10509 5.14510 5.20117 5.25745 5.29752 5.32812 5.37051 5.38375 5.43610 5.56188 5.59224 5.62740 5.69616 5.73284 5.82336 5.87326 5.97054 6.00895 6.31299 6.48143 6.48635 6.67521 6.77711 6.90749 6.92795 6.95605 7.09612 7.49347 7.52726 7.56917 7.88552 8.02877 8.75318 8.91232 9.29975 9.46371 10.94102 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010200 B = 0.002685 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2744.411906 B =10427.604697 C =12444.908402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.092 4.092 3 C -0.118 4.118 4 C -0.093 4.093 5 C -0.071 4.071 6 C 0.205 3.795 7 H 0.097 0.903 8 C 0.049 3.951 9 N -0.526 5.526 10 C 0.007 3.993 11 C 0.065 3.935 12 O -0.387 6.387 13 C 0.066 3.934 14 C 0.018 3.982 15 N -0.750 5.750 16 C 0.694 3.306 17 O -0.599 6.599 18 N -0.728 5.728 19 C 0.267 3.733 20 C -0.541 4.541 21 H 0.063 0.937 22 C 0.063 3.937 23 N -0.885 5.885 24 Si 0.904 3.096 25 H -0.272 1.272 26 H -0.282 1.282 27 H -0.282 1.282 28 C -0.109 4.109 29 C -0.118 4.118 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.077 0.923 36 H 0.049 0.951 37 H 0.049 0.951 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.044 0.956 45 H 0.392 0.608 46 H 0.386 0.614 47 H 0.028 0.972 48 H 0.022 0.978 49 H 0.265 0.735 50 H 0.118 0.882 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.124 4.968 -15.965 26.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.092 4.092 3 C -0.136 4.136 4 C -0.111 4.111 5 C -0.072 4.072 6 C 0.099 3.901 7 H 0.115 0.885 8 C -0.080 4.080 9 N -0.251 5.251 10 C -0.121 4.121 11 C -0.012 4.012 12 O -0.305 6.305 13 C -0.011 4.011 14 C -0.111 4.111 15 N -0.408 5.408 16 C 0.394 3.606 17 O -0.478 6.478 18 N -0.380 5.380 19 C 0.146 3.854 20 C -0.580 4.580 21 H 0.081 0.919 22 C -0.141 4.141 23 N -0.523 5.523 24 Si 0.731 3.269 25 H -0.197 1.197 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.127 4.127 29 C -0.136 4.136 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.096 0.904 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.109 0.891 39 H 0.115 0.885 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.113 0.887 43 H 0.102 0.898 44 H 0.062 0.938 45 H 0.226 0.774 46 H 0.219 0.781 47 H 0.046 0.954 48 H 0.040 0.960 49 H 0.075 0.925 50 H 0.136 0.864 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -20.636 6.046 -16.154 26.895 hybrid contribution 0.618 -1.837 0.948 2.158 sum -20.018 4.209 -15.205 25.488 Atomic orbital electron populations 1.20772 0.91496 1.02606 1.02101 1.19871 0.95850 0.93287 1.00186 1.20942 0.93980 0.97393 1.01245 1.20897 0.93940 0.97260 0.99008 1.19739 0.94260 0.93630 0.99558 1.19520 0.89035 0.92776 0.88780 0.88506 1.22546 0.98946 0.94481 0.92042 1.62231 1.59109 1.01972 1.01822 1.22965 0.99984 0.89579 0.99534 1.22670 0.98446 0.98018 0.82024 1.87980 1.77264 1.35333 1.29941 1.22625 0.99745 0.82501 0.96202 1.22765 0.98387 1.00085 0.89843 1.45239 1.21622 1.23019 1.50908 1.16149 0.80998 0.83877 0.79577 1.90869 1.55028 1.33591 1.68348 1.45715 1.28434 1.22102 1.41729 1.18991 0.79464 0.96937 0.90036 1.21261 1.09024 1.01485 1.26181 0.91909 1.24950 0.95688 0.96677 0.96741 1.69989 1.13275 1.29904 1.39111 0.86362 0.78289 0.82366 0.79881 1.19661 1.20818 1.20800 1.20841 0.94136 0.97385 1.00363 1.20931 0.93965 0.97425 1.01244 0.91382 0.91711 0.91713 0.86294 0.86248 0.90437 0.93225 0.93294 0.89143 0.88522 0.92334 0.92378 0.88665 0.89750 0.93771 0.77365 0.78143 0.95432 0.96009 0.92518 0.86392 0.86302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 10.01 36.00 0.36 -0.41 16 2 C -0.09 -0.85 5.88 -104.62 -0.62 -1.47 16 3 C -0.12 -1.12 9.70 -39.58 -0.38 -1.51 16 4 C -0.09 -0.99 9.22 -39.58 -0.36 -1.35 16 5 C -0.07 -0.81 4.60 -104.62 -0.48 -1.29 16 6 C 0.21 2.74 1.93 -69.08 -0.13 2.61 16 7 H 0.10 1.49 5.44 -51.93 -0.28 1.21 16 8 C 0.05 0.62 4.84 -3.82 -0.02 0.60 16 9 N -0.53 -5.90 4.45 -234.31 -1.04 -6.95 16 10 C 0.01 0.08 5.02 -3.71 -0.02 0.07 16 11 C 0.07 0.64 7.01 37.21 0.26 0.91 16 12 O -0.39 -4.41 10.83 -35.23 -0.38 -4.79 16 13 C 0.07 0.61 7.01 37.21 0.26 0.87 16 14 C 0.02 0.18 5.67 -3.72 -0.02 0.16 16 15 N -0.75 -11.15 5.01 -59.81 -0.30 -11.45 16 16 C 0.69 14.11 8.54 -86.92 -0.74 13.37 16 17 O -0.60 -14.63 15.98 5.29 0.08 -14.55 16 18 N -0.73 -15.49 5.55 -66.41 -0.37 -15.86 16 19 C 0.27 7.13 5.45 -5.20 -0.03 7.10 16 20 C -0.54 -14.73 9.28 -34.44 -0.32 -15.05 16 21 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 22 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 23 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 24 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 25 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 C -0.11 -1.13 9.09 -39.58 -0.36 -1.49 16 29 C -0.12 -1.12 9.70 -39.58 -0.38 -1.50 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.39 8.09 -51.93 -0.42 -0.03 16 32 H 0.06 0.39 8.09 -51.93 -0.42 -0.03 16 33 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 34 H 0.12 1.16 6.24 -52.48 -0.33 0.84 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 1.00 3.84 -51.93 -0.20 0.80 16 39 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.39 4.78 6.92 -40.82 -0.28 4.50 16 46 H 0.39 7.04 8.35 -40.82 -0.34 6.70 16 47 H 0.03 0.82 8.10 -51.93 -0.42 0.40 16 48 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 50 H 0.12 1.07 6.89 -52.49 -0.36 0.71 16 51 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 LS Contribution 407.88 15.07 6.15 6.15 Total: -1.00 -33.45 407.88 -11.32 -44.76 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -8.08 Total: 8.97 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: -3.09 Total: 3.29 kcal Atomic # 7 Polarization: -58.73 SS G_CDS: -0.97 Total: -59.70 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -0.30 Total: -19.34 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.45 -11.32 -44.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426442147.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.204 kcal (2) G-P(sol) polarization free energy of solvation -33.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.59 seconds