Wall clock time and date at job start Wed Apr 1 2020 04:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38236 * 120.00006 * 2 1 4 4 C 1.38231 * 119.99905 * 180.02562 * 3 2 1 5 5 C 1.38239 * 120.00121 * 359.97438 * 4 3 2 6 6 C 1.50695 * 120.00093 * 179.97438 * 5 4 3 7 7 H 1.09005 * 109.47023 * 19.99627 * 6 5 4 8 8 C 1.53001 * 109.46872 * 260.00157 * 6 5 4 9 9 N 1.46901 * 109.47522 * 61.77403 * 8 6 5 10 10 C 1.47016 * 110.99836 * 53.56119 * 9 8 6 11 11 C 1.53098 * 109.25699 * 182.35413 * 10 9 8 12 12 O 1.43013 * 109.29213 * 303.22013 * 11 10 9 13 13 C 1.43018 * 113.73870 * 58.64707 * 12 11 10 14 14 C 1.47007 * 111.00250 * 177.24613 * 9 8 6 15 15 N 1.46500 * 109.47384 * 140.00051 * 6 5 4 16 16 C 1.34779 * 119.99840 * 208.73250 * 15 6 5 17 17 O 1.21584 * 120.00178 * 354.98210 * 16 15 6 18 18 N 1.34776 * 119.99831 * 174.97725 * 16 15 6 19 19 C 1.46499 * 120.00183 * 185.01674 * 18 16 15 20 20 C 1.50696 * 109.47156 * 184.95609 * 19 18 16 21 21 H 1.07997 * 120.00545 * 0.02562 * 20 19 18 22 22 C 1.37888 * 119.99988 * 179.97438 * 20 19 18 23 23 N 1.31511 * 119.99497 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00063 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47147 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46959 * 120.00031 * 24 22 20 27 27 H 1.48498 * 109.47199 * 240.00196 * 24 22 20 28 28 C 1.38237 * 119.99886 * 0.25479 * 5 4 3 29 29 C 1.38230 * 119.99833 * 359.49629 * 28 5 4 30 30 H 1.09004 * 109.46965 * 90.00055 * 1 2 3 31 31 H 1.09000 * 109.47176 * 210.00089 * 1 2 3 32 32 H 1.08998 * 109.47516 * 330.00149 * 1 2 3 33 33 H 1.08003 * 119.99795 * 359.97438 * 3 2 1 34 34 H 1.08006 * 119.99940 * 179.97438 * 4 3 2 35 35 H 1.08998 * 109.47088 * 301.76407 * 8 6 5 36 36 H 1.09004 * 109.46950 * 181.77076 * 8 6 5 37 37 H 1.09003 * 109.46936 * 62.44030 * 10 9 8 38 38 H 1.09000 * 109.54435 * 302.31180 * 10 9 8 39 39 H 1.08999 * 109.50851 * 183.25880 * 11 10 9 40 40 H 1.09001 * 109.50591 * 63.17255 * 11 10 9 41 41 H 1.08995 * 109.50747 * 61.26403 * 13 12 11 42 42 H 1.09002 * 109.50921 * 181.35208 * 13 12 11 43 43 H 1.09001 * 109.50700 * 57.66971 * 14 9 8 44 44 H 1.09000 * 109.50649 * 297.53768 * 14 9 8 45 45 H 0.96998 * 119.99681 * 28.73089 * 15 6 5 46 46 H 0.97001 * 119.99747 * 5.02213 * 18 16 15 47 47 H 1.09005 * 109.47182 * 304.95797 * 19 18 16 48 48 H 1.09002 * 109.47150 * 64.95851 * 19 18 16 49 49 H 0.97005 * 119.99690 * 179.97438 * 23 22 20 50 50 H 1.07997 * 119.99873 * 179.72734 * 28 5 4 51 51 H 1.08008 * 120.00141 * 180.22568 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.2717 0.0000 -0.0005 6 6 5.7786 -0.0001 -0.0017 7 1 6.1422 0.9658 0.3490 8 6 6.2875 -0.2512 -1.4226 9 7 5.8325 0.8321 -2.3044 10 6 6.2099 2.1458 -1.7629 11 6 5.6667 3.2449 -2.6799 12 8 6.1628 3.0420 -4.0058 13 6 5.8122 1.7726 -4.5637 14 6 6.3578 0.6586 -3.6664 15 7 6.2677 -1.0577 0.8862 16 6 7.4578 -0.9221 1.5041 17 8 8.1667 0.0338 1.2550 18 7 7.8620 -1.8460 2.3982 19 6 9.1027 -1.6437 3.1506 20 6 9.3891 -2.8655 3.9849 21 1 8.7147 -3.7086 3.9573 22 6 10.5128 -2.9075 4.7830 23 7 11.3347 -1.8814 4.8155 24 14 10.8682 -4.4222 5.8167 25 1 9.7990 -5.4302 5.6018 26 1 12.1777 -4.9977 5.4176 27 1 10.9106 -4.0433 7.2519 28 6 3.5805 -1.1972 -0.0053 29 6 2.1982 -1.1972 0.0004 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 1.6581 2.1325 -0.0004 34 1 4.1205 2.1325 -0.0010 35 1 5.8982 -1.2026 -1.7851 36 1 7.3770 -0.2825 -1.4181 37 1 7.2962 2.2189 -1.7110 38 1 5.7884 2.2634 -0.7645 39 1 5.9931 4.2184 -2.3141 40 1 4.5774 3.2060 -2.6889 41 1 4.7273 1.6902 -4.6274 42 1 6.2433 1.6817 -5.5607 43 1 6.0443 -0.3096 -4.0568 44 1 7.4464 0.7083 -3.6456 45 1 5.7350 -1.8556 1.0294 46 1 7.3315 -2.6450 2.5434 47 1 9.9259 -1.4771 2.4558 48 1 8.9954 -0.7761 3.8016 49 1 12.1251 -1.9108 5.3772 50 1 4.1205 -2.1325 -0.0098 51 1 1.6581 -2.1325 0.0004 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426442147.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:17 Heat of formation + Delta-G solvation = -69.133865 kcal Electronic energy + Delta-G solvation = -31043.019235 eV Core-core repulsion = 26941.174585 eV Total energy + Delta-G solvation = -4101.844649 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 2.58 seconds Orbital eigenvalues (eV) -41.57944 -40.47650 -40.01247 -37.63062 -36.16854 -35.68600 -34.40700 -33.35945 -32.28682 -31.68478 -30.83185 -29.11220 -28.16427 -26.15648 -25.16975 -24.75138 -23.67532 -23.26540 -21.89400 -21.63884 -20.91676 -19.95143 -18.38370 -17.99761 -17.33369 -17.16863 -16.72454 -16.58401 -16.47468 -16.24569 -16.04419 -15.98655 -15.79422 -15.68426 -15.07192 -14.95544 -14.62943 -14.48449 -14.26735 -14.17635 -14.03569 -13.97561 -13.66780 -13.21067 -12.97353 -12.88309 -12.77190 -12.71087 -12.69798 -12.40229 -12.22691 -12.19259 -11.92477 -11.69371 -11.46136 -11.45269 -11.30697 -10.82694 -10.75054 -10.33266 -9.74673 -9.66686 -9.50741 -9.34270 -8.29421 -6.45672 0.44121 0.58641 1.42715 1.44279 1.57322 1.76799 2.17037 2.37918 2.72214 2.89989 2.94085 3.05781 3.50140 3.58054 3.80904 3.84782 3.96595 4.00258 4.10444 4.15322 4.16945 4.19700 4.28243 4.34265 4.50716 4.54773 4.60016 4.66310 4.67952 4.75196 4.78378 4.86015 4.90697 4.93331 4.98385 5.01834 5.06897 5.23134 5.25515 5.32819 5.38709 5.47770 5.55465 5.64976 5.71300 5.77954 5.83196 5.84225 5.86726 6.15233 6.17308 6.21659 6.66170 7.22473 7.26679 7.67099 8.83141 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010200 B = 0.002685 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2744.411906 B =10427.604697 C =12444.908402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.093 4.093 3 C -0.123 4.123 4 C -0.102 4.102 5 C -0.085 4.085 6 C 0.210 3.790 7 H 0.071 0.929 8 C 0.058 3.942 9 N -0.516 5.516 10 C 0.009 3.991 11 C 0.070 3.930 12 O -0.406 6.406 13 C 0.067 3.933 14 C 0.015 3.985 15 N -0.726 5.726 16 C 0.694 3.306 17 O -0.644 6.644 18 N -0.722 5.722 19 C 0.286 3.714 20 C -0.553 4.553 21 H 0.084 0.916 22 C 0.003 3.997 23 N -0.931 5.931 24 Si 0.986 3.014 25 H -0.253 1.253 26 H -0.280 1.280 27 H -0.278 1.278 28 C -0.115 4.115 29 C -0.122 4.122 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.138 0.862 34 H 0.120 0.880 35 H 0.093 0.907 36 H 0.012 0.988 37 H 0.017 0.983 38 H 0.091 0.909 39 H 0.108 0.892 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.115 0.885 43 H 0.102 0.898 44 H 0.024 0.976 45 H 0.409 0.591 46 H 0.405 0.595 47 H -0.014 1.014 48 H -0.015 1.015 49 H 0.269 0.731 50 H 0.129 0.871 51 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.329 3.091 -16.415 29.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.093 4.093 3 C -0.141 4.141 4 C -0.121 4.121 5 C -0.086 4.086 6 C 0.104 3.896 7 H 0.089 0.911 8 C -0.071 4.071 9 N -0.241 5.241 10 C -0.120 4.120 11 C -0.007 4.007 12 O -0.325 6.325 13 C -0.009 4.009 14 C -0.113 4.113 15 N -0.384 5.384 16 C 0.394 3.606 17 O -0.527 6.527 18 N -0.375 5.375 19 C 0.163 3.837 20 C -0.591 4.591 21 H 0.102 0.898 22 C -0.196 4.196 23 N -0.570 5.570 24 Si 0.809 3.191 25 H -0.176 1.176 26 H -0.205 1.205 27 H -0.204 1.204 28 C -0.133 4.133 29 C -0.140 4.140 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.155 0.845 34 H 0.138 0.862 35 H 0.112 0.888 36 H 0.030 0.970 37 H 0.035 0.965 38 H 0.109 0.891 39 H 0.126 0.874 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.133 0.867 43 H 0.121 0.879 44 H 0.043 0.957 45 H 0.247 0.753 46 H 0.240 0.760 47 H 0.004 0.996 48 H 0.003 0.997 49 H 0.077 0.923 50 H 0.147 0.853 51 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -23.929 4.138 -16.643 29.440 hybrid contribution 1.535 -1.183 1.022 2.191 sum -22.394 2.955 -15.621 27.463 Atomic orbital electron populations 1.20822 0.89585 1.03473 1.02991 1.20250 0.97348 0.93017 0.98714 1.21189 0.93472 0.98591 1.00805 1.21010 0.94734 0.97061 0.99263 1.19532 0.92393 0.94769 1.01904 1.19509 0.90821 0.90844 0.88429 0.91073 1.22404 0.96573 0.95866 0.92259 1.62305 1.58402 1.01322 1.02066 1.22966 0.98073 0.90561 1.00351 1.22722 0.99105 0.97730 0.81153 1.87957 1.77757 1.36394 1.30379 1.22775 1.00520 0.81092 0.96559 1.22886 0.97327 1.01733 0.89397 1.44988 1.19587 1.24007 1.49779 1.16274 0.82000 0.82900 0.79429 1.90842 1.56819 1.35356 1.69652 1.45291 1.27293 1.23232 1.41718 1.18410 0.80351 0.96026 0.88919 1.21626 1.09629 1.01801 1.26052 0.89817 1.26070 0.95289 1.00211 0.98060 1.70151 1.14004 1.32599 1.40215 0.85096 0.78458 0.78008 0.77546 1.17594 1.20545 1.20374 1.21000 0.94847 0.97220 1.00219 1.21213 0.93623 0.98544 1.00651 0.90361 0.90841 0.90938 0.84456 0.86192 0.88849 0.96966 0.96459 0.89137 0.87370 0.90853 0.91184 0.86718 0.87937 0.95721 0.75308 0.76002 0.99615 0.99709 0.92253 0.85310 0.84254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 10.01 71.24 0.71 -0.43 16 2 C -0.09 -1.46 5.88 -19.87 -0.12 -1.58 16 3 C -0.12 -2.08 9.70 22.27 0.22 -1.86 16 4 C -0.10 -2.08 9.22 22.27 0.21 -1.87 16 5 C -0.09 -1.88 4.60 -19.87 -0.09 -1.97 16 6 C 0.21 5.76 1.93 44.24 0.09 5.84 16 7 H 0.07 2.35 5.44 -2.38 -0.01 2.34 16 8 C 0.06 1.53 4.84 86.30 0.42 1.95 16 9 N -0.52 -11.72 4.45 -895.22 -3.98 -15.70 16 10 C 0.01 0.21 5.02 86.31 0.43 0.64 16 11 C 0.07 1.35 7.01 72.01 0.50 1.86 16 12 O -0.41 -9.02 10.83 -148.98 -1.61 -10.63 16 13 C 0.07 1.15 7.01 72.01 0.50 1.66 16 14 C 0.01 0.30 5.67 86.31 0.49 0.78 16 15 N -0.73 -21.85 5.01 -461.41 -2.31 -24.15 16 16 C 0.69 29.40 8.54 179.05 1.53 30.93 16 17 O -0.64 -33.61 15.98 -3.98 -0.06 -33.67 16 18 N -0.72 -31.53 5.55 -482.30 -2.68 -34.21 16 19 C 0.29 16.05 5.45 85.63 0.47 16.51 16 20 C -0.55 -30.36 9.28 25.60 0.24 -30.12 16 21 H 0.08 4.15 7.60 -2.91 -0.02 4.13 16 22 C 0.00 0.18 5.46 84.66 0.46 0.64 16 23 N -0.93 -56.66 13.29 21.45 0.28 -56.38 16 24 Si 0.99 42.53 29.54 68.60 2.03 44.56 16 25 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 26 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 27 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 28 C -0.11 -2.14 9.09 22.27 0.20 -1.94 16 29 C -0.12 -1.98 9.70 22.27 0.22 -1.76 16 30 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 31 H 0.07 0.64 8.09 -2.39 -0.02 0.62 16 32 H 0.07 0.64 8.09 -2.39 -0.02 0.62 16 33 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 34 H 0.12 2.33 6.24 -2.91 -0.02 2.31 16 35 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 37 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.09 2.15 3.84 -2.39 -0.01 2.14 16 39 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.41 9.55 6.92 -92.71 -0.64 8.91 16 46 H 0.40 14.53 8.35 -92.71 -0.77 13.76 16 47 H -0.01 -0.90 8.10 -2.38 -0.02 -0.92 16 48 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 49 H 0.27 15.20 8.31 -92.70 -0.77 14.43 16 50 H 0.13 2.02 6.89 -2.91 -0.02 2.00 16 51 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 Total: -1.00 -76.06 407.88 -2.32 -78.39 By element: Atomic # 1 Polarization: 33.00 SS G_CDS: -0.47 Total: 32.53 kcal Atomic # 6 Polarization: 12.79 SS G_CDS: 6.48 Total: 19.27 kcal Atomic # 7 Polarization: -121.76 SS G_CDS: -8.68 Total: -130.44 kcal Atomic # 8 Polarization: -42.63 SS G_CDS: -1.68 Total: -44.31 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -76.06 -2.32 -78.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426442147.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.252 kcal (2) G-P(sol) polarization free energy of solvation -76.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.58 seconds