Wall clock time and date at job start Wed Apr 1 2020 04:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38258 * 119.99828 * 2 1 4 4 C 1.38213 * 120.00315 * 179.97438 * 3 2 1 5 5 C 1.38251 * 119.99771 * 0.02562 * 4 3 2 6 6 C 1.38212 * 120.00075 * 0.02562 * 5 4 3 7 7 C 1.50709 * 119.99948 * 179.69942 * 6 5 4 8 8 H 1.08998 * 109.46639 * 199.99965 * 7 6 5 9 9 C 1.52996 * 109.46941 * 80.00239 * 7 6 5 10 10 N 1.46496 * 109.47234 * 63.88784 * 9 7 6 11 11 C 1.34776 * 119.99857 * 185.36189 * 10 9 7 12 12 O 1.21588 * 119.99874 * 359.97438 * 11 10 9 13 13 N 1.34782 * 120.00203 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00113 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.47147 * 179.97438 * 14 13 11 16 16 H 1.08000 * 119.99413 * 359.97438 * 15 14 13 17 17 C 1.37874 * 119.99792 * 179.97438 * 15 14 13 18 18 N 1.31508 * 120.00141 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99620 * 179.97438 * 17 15 14 20 20 H 1.48509 * 109.47321 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47094 * 120.00247 * 19 17 15 22 22 H 1.48500 * 109.47176 * 240.00288 * 19 17 15 23 23 N 1.46898 * 109.46858 * 319.99765 * 7 6 5 24 24 C 1.47009 * 111.00507 * 300.37979 * 23 7 6 25 25 C 1.53103 * 109.26044 * 177.61034 * 24 23 7 26 26 O 1.43016 * 109.25579 * 56.84807 * 25 24 23 27 27 C 1.43017 * 113.74000 * 301.33096 * 26 25 24 28 28 C 1.47023 * 110.99576 * 176.74293 * 23 7 6 29 29 C 1.38209 * 120.00449 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.47203 * 90.00183 * 1 2 3 31 31 H 1.09002 * 109.46261 * 210.00091 * 1 2 3 32 32 H 1.08998 * 109.47409 * 329.99529 * 1 2 3 33 33 H 1.08001 * 119.99836 * 0.02562 * 3 2 1 34 34 H 1.08001 * 120.00024 * 179.97438 * 4 3 2 35 35 H 1.08005 * 120.00558 * 179.97438 * 5 4 3 36 36 H 1.09000 * 109.46713 * 183.88695 * 9 7 6 37 37 H 1.08997 * 109.47240 * 303.88043 * 9 7 6 38 38 H 0.96995 * 120.00440 * 5.35426 * 10 9 7 39 39 H 0.96999 * 119.99576 * 359.97438 * 13 11 10 40 40 H 1.09003 * 109.46867 * 299.99711 * 14 13 11 41 41 H 1.08996 * 109.47563 * 59.99467 * 14 13 11 42 42 H 0.97010 * 119.99987 * 179.97438 * 18 17 15 43 43 H 1.09001 * 109.50853 * 297.54544 * 24 23 7 44 44 H 1.09001 * 109.50538 * 57.67055 * 24 23 7 45 45 H 1.09000 * 109.50210 * 296.91320 * 25 24 23 46 46 H 1.08999 * 109.50737 * 176.78471 * 25 24 23 47 47 H 1.09000 * 109.50670 * 298.73974 * 27 26 25 48 48 H 1.08999 * 109.54137 * 178.62916 * 27 26 25 49 49 H 1.08994 * 109.50942 * 302.33136 * 28 23 7 50 50 H 1.08999 * 109.50442 * 62.41982 * 28 23 7 51 51 H 1.08004 * 120.00068 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1975 0.0005 5 6 4.2717 0.0002 0.0005 6 6 3.5807 -1.1968 -0.0005 7 6 4.3343 -2.5019 -0.0074 8 1 3.6784 -3.2983 -0.3588 9 6 4.8115 -2.8226 1.4104 10 7 3.6516 -3.0231 2.2825 11 6 3.8276 -3.2111 3.6054 12 8 4.9492 -3.2148 4.0750 13 7 2.7605 -3.3951 4.4078 14 6 2.9518 -3.6000 5.8457 15 6 1.6112 -3.7788 6.5105 16 1 0.7071 -3.7429 5.9208 17 6 1.5391 -3.9882 7.8713 18 7 2.6400 -4.0314 8.5893 19 14 -0.1227 -4.2091 8.6954 20 1 -1.1975 -4.1184 7.6746 21 1 -0.1763 -5.5395 9.3528 22 1 -0.3156 -3.1456 9.7137 23 7 5.4945 -2.3926 -0.9017 24 6 5.0739 -2.0754 -2.2742 25 6 6.3138 -1.9122 -3.1574 26 8 7.0986 -3.1061 -3.0939 27 6 7.5260 -3.4445 -1.7717 28 6 6.2985 -3.6233 -0.8745 29 6 2.1981 -1.1969 -0.0005 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3632 -0.8900 0.5139 32 1 -0.3634 0.8899 0.5139 33 1 1.6582 2.1327 0.0004 34 1 4.1203 2.1329 0.0001 35 1 5.3518 0.0002 0.0005 36 1 5.4150 -3.7302 1.3940 37 1 5.4112 -1.9945 1.7880 38 1 2.7569 -3.0204 1.9079 39 1 1.8657 -3.3918 4.0332 40 1 3.5599 -4.4900 6.0081 41 1 3.4558 -2.7329 6.2725 42 1 2.5892 -4.1784 9.5468 43 1 4.4552 -2.8849 -2.6615 44 1 4.5021 -1.1475 -2.2743 45 1 6.9052 -1.0684 -2.8020 46 1 6.0058 -1.7334 -4.1876 47 1 8.1527 -2.6453 -1.3760 48 1 8.0952 -4.3737 -1.7991 49 1 6.6205 -3.8251 0.1471 50 1 5.6991 -4.4576 -1.2387 51 1 1.6582 -2.1323 -0.0014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426450106.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:08 Heat of formation + Delta-G solvation = -69.926910 kcal Electronic energy + Delta-G solvation = -30996.120886 eV Core-core repulsion = 26894.241847 eV Total energy + Delta-G solvation = -4101.879038 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -41.51340 -40.62599 -39.90403 -37.66157 -36.17394 -35.40017 -34.31247 -33.63171 -32.47746 -32.16867 -30.11827 -28.98006 -27.67304 -27.09389 -25.18828 -24.72837 -23.64088 -23.01272 -21.90863 -21.64082 -20.73458 -19.82165 -18.08979 -17.82524 -17.58164 -17.25843 -17.02043 -16.81946 -16.45054 -16.29773 -16.05136 -15.90683 -15.78372 -15.26290 -15.05658 -14.91080 -14.80590 -14.60127 -14.35476 -14.03789 -13.96914 -13.90622 -13.49804 -13.34412 -13.04624 -12.87906 -12.85292 -12.74535 -12.67138 -12.34432 -12.30194 -12.21386 -11.88323 -11.66904 -11.51765 -11.44185 -11.27863 -10.81299 -10.69563 -10.28186 -9.71078 -9.60160 -9.49885 -9.42550 -8.27860 -6.44089 0.42876 0.52126 1.43585 1.45272 1.58180 1.76269 2.23842 2.38761 2.65506 2.86244 2.95977 3.07271 3.46658 3.57818 3.80638 3.91285 3.93201 3.98155 4.06740 4.16501 4.19147 4.28518 4.32222 4.33288 4.49236 4.53481 4.61867 4.67419 4.75082 4.77945 4.81750 4.83515 4.86630 4.90019 5.01257 5.02322 5.08976 5.16301 5.27855 5.34007 5.44156 5.49584 5.57378 5.60955 5.66645 5.72415 5.85621 5.88231 5.92301 6.14979 6.17875 6.22456 6.67696 7.24396 7.28979 7.70796 8.84784 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011165 B = 0.002657 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.147683 B =10534.951743 C =12370.072989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.092 4.092 3 C -0.129 4.129 4 C -0.126 4.126 5 C -0.108 4.108 6 C -0.082 4.082 7 C 0.130 3.870 8 H 0.066 0.934 9 C 0.154 3.846 10 N -0.728 5.728 11 C 0.694 3.306 12 O -0.647 6.647 13 N -0.722 5.722 14 C 0.286 3.714 15 C -0.552 4.552 16 H 0.083 0.917 17 C 0.003 3.997 18 N -0.931 5.931 19 Si 0.986 3.014 20 H -0.253 1.253 21 H -0.279 1.279 22 H -0.279 1.279 23 N -0.527 5.527 24 C 0.025 3.975 25 C 0.064 3.936 26 O -0.403 6.403 27 C 0.066 3.934 28 C 0.010 3.990 29 C -0.125 4.125 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.125 0.875 36 H 0.064 0.936 37 H 0.055 0.945 38 H 0.406 0.594 39 H 0.404 0.596 40 H -0.014 1.014 41 H -0.016 1.016 42 H 0.269 0.731 43 H 0.041 0.959 44 H 0.092 0.908 45 H 0.061 0.939 46 H 0.114 0.886 47 H 0.062 0.938 48 H 0.113 0.887 49 H 0.090 0.910 50 H 0.045 0.955 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.746 7.604 -27.939 28.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.092 4.092 3 C -0.147 4.147 4 C -0.144 4.144 5 C -0.126 4.126 6 C -0.082 4.082 7 C 0.022 3.978 8 H 0.083 0.917 9 C 0.029 3.971 10 N -0.386 5.386 11 C 0.394 3.606 12 O -0.529 6.529 13 N -0.376 5.376 14 C 0.163 3.837 15 C -0.590 4.590 16 H 0.101 0.899 17 C -0.196 4.196 18 N -0.570 5.570 19 Si 0.809 3.191 20 H -0.176 1.176 21 H -0.204 1.204 22 H -0.205 1.205 23 N -0.253 5.253 24 C -0.103 4.103 25 C -0.012 4.012 26 O -0.322 6.322 27 C -0.011 4.011 28 C -0.118 4.118 29 C -0.144 4.144 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.143 0.857 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.242 0.758 39 H 0.239 0.761 40 H 0.004 0.996 41 H 0.002 0.998 42 H 0.077 0.923 43 H 0.059 0.941 44 H 0.110 0.890 45 H 0.080 0.920 46 H 0.132 0.868 47 H 0.080 0.920 48 H 0.131 0.869 49 H 0.108 0.892 50 H 0.064 0.936 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.689 7.843 -27.338 28.449 hybrid contribution -1.499 -0.616 0.679 1.757 sum -0.810 7.227 -26.659 27.633 Atomic orbital electron populations 1.20830 0.89812 1.03401 1.03029 1.20135 0.97164 0.92922 0.99019 1.21320 0.94444 0.98285 1.00659 1.21386 0.94658 0.98482 0.99896 1.21063 1.00434 0.91822 0.99269 1.19603 0.93400 0.94094 1.01149 1.20510 0.91134 0.94783 0.91385 0.91669 1.21095 0.87216 1.00978 0.87835 1.44726 1.10648 1.78476 1.04701 1.16225 0.84595 0.77995 0.81833 1.90841 1.24942 1.61241 1.75925 1.45278 1.07707 1.75830 1.08755 1.18404 0.96576 0.93535 0.75168 1.21615 0.92537 1.51143 0.93737 0.89852 1.26062 1.01533 0.94124 0.97901 1.70152 1.30053 1.49299 1.07451 0.85101 0.78045 0.77667 0.78320 1.17601 1.20438 1.20481 1.62086 1.20022 1.34895 1.08295 1.22781 0.98085 1.02035 0.87386 1.22774 0.90610 0.87168 1.00688 1.87965 1.71118 1.44478 1.28615 1.22729 0.94597 1.02168 0.81574 1.22955 0.96179 0.90715 1.01956 1.21064 0.93121 0.98519 1.01656 0.90075 0.91135 0.91113 0.84773 0.84800 0.85750 0.91785 0.92654 0.75817 0.76134 0.99590 0.99803 0.92252 0.94114 0.88968 0.92022 0.86781 0.92015 0.86942 0.89163 0.93637 0.85050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.53 10.01 71.24 0.71 -0.81 16 2 C -0.09 -1.64 5.88 -19.87 -0.12 -1.75 16 3 C -0.13 -2.30 9.70 22.27 0.22 -2.08 16 4 C -0.13 -2.35 10.05 22.27 0.22 -2.13 16 5 C -0.11 -2.19 8.38 22.27 0.19 -2.01 16 6 C -0.08 -1.62 3.43 -19.86 -0.07 -1.69 16 7 C 0.13 2.55 1.79 44.17 0.08 2.62 16 8 H 0.07 1.17 8.00 -2.39 -0.02 1.15 16 9 C 0.15 4.10 4.86 86.38 0.42 4.52 16 10 N -0.73 -21.95 5.30 -478.55 -2.54 -24.49 16 11 C 0.69 29.73 8.57 179.05 1.53 31.26 16 12 O -0.65 -34.20 16.34 -3.99 -0.07 -34.26 16 13 N -0.72 -31.80 5.55 -482.29 -2.68 -34.48 16 14 C 0.29 16.12 5.43 85.63 0.46 16.58 16 15 C -0.55 -30.32 9.28 25.60 0.24 -30.09 16 16 H 0.08 4.13 7.60 -2.91 -0.02 4.11 16 17 C 0.00 0.18 5.46 84.65 0.46 0.65 16 18 N -0.93 -56.60 13.29 21.45 0.28 -56.32 16 19 Si 0.99 42.43 29.54 68.60 2.03 44.46 16 20 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 21 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 22 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 23 N -0.53 -9.38 3.91 -874.36 -3.41 -12.80 16 24 C 0.02 0.38 5.30 86.32 0.46 0.84 16 25 C 0.06 0.91 7.01 72.02 0.50 1.41 16 26 O -0.40 -7.32 10.83 -148.98 -1.61 -8.94 16 27 C 0.07 1.04 7.01 72.01 0.50 1.54 16 28 C 0.01 0.17 5.27 86.31 0.45 0.62 16 29 C -0.13 -2.28 8.55 22.27 0.19 -2.09 16 30 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.07 0.91 8.09 -2.39 -0.02 0.89 16 32 H 0.07 0.89 8.09 -2.39 -0.02 0.87 16 33 H 0.13 1.88 8.06 -2.91 -0.02 1.85 16 34 H 0.13 2.01 8.06 -2.91 -0.02 1.99 16 35 H 0.12 2.59 7.72 -2.91 -0.02 2.56 16 36 H 0.06 1.76 6.09 -2.39 -0.01 1.74 16 37 H 0.06 1.74 8.13 -2.39 -0.02 1.72 16 38 H 0.41 9.69 7.56 -92.71 -0.70 8.99 16 39 H 0.40 14.67 8.34 -92.71 -0.77 13.90 16 40 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 41 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 42 H 0.27 15.18 8.31 -92.70 -0.77 14.41 16 43 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.09 1.39 6.38 -2.39 -0.02 1.37 16 45 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.09 1.68 6.03 -2.39 -0.01 1.66 16 50 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 51 H 0.13 1.95 8.00 -2.91 -0.02 1.93 16 Total: -1.00 -75.01 409.74 -2.07 -77.08 By element: Atomic # 1 Polarization: 32.87 SS G_CDS: -0.53 Total: 32.34 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: 6.46 Total: 17.40 kcal Atomic # 7 Polarization: -119.74 SS G_CDS: -8.35 Total: -128.08 kcal Atomic # 8 Polarization: -41.52 SS G_CDS: -1.68 Total: -43.20 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -75.01 -2.07 -77.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426450106.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.155 kcal (2) G-P(sol) polarization free energy of solvation -75.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds