Wall clock time and date at job start Wed Apr 1 2020 04:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38253 * 120.00165 * 2 1 4 4 C 1.38213 * 120.00248 * 180.25751 * 3 2 1 5 5 C 1.38267 * 119.99624 * 359.50997 * 4 3 2 6 6 C 1.38202 * 119.99980 * 0.44695 * 5 4 3 7 7 C 1.38214 * 120.00036 * 179.97438 * 2 1 3 8 8 C 1.50696 * 119.99605 * 359.97367 * 7 2 1 9 9 H 1.09000 * 109.47413 * 45.64413 * 8 7 2 10 10 C 1.53000 * 109.47197 * 165.64436 * 8 7 2 11 11 C 1.50697 * 109.47587 * 185.00105 * 10 8 7 12 12 O 1.21278 * 120.00028 * 359.97438 * 11 10 8 13 13 N 1.34775 * 120.00040 * 179.97438 * 11 10 8 14 14 C 1.46505 * 119.99845 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.46907 * 179.97438 * 14 13 11 16 16 C 1.53002 * 109.47264 * 299.99749 * 15 14 13 17 17 C 1.52998 * 109.47526 * 59.99970 * 15 14 13 18 18 C 1.50706 * 109.47116 * 180.02562 * 15 14 13 19 19 H 1.08001 * 119.99588 * 359.97438 * 18 15 14 20 20 C 1.37868 * 120.00155 * 180.02562 * 18 15 14 21 21 N 1.31515 * 120.00220 * 359.97438 * 20 18 15 22 22 Si 1.86806 * 120.00206 * 179.97438 * 20 18 15 23 23 H 1.48503 * 109.46678 * 59.99575 * 22 20 18 24 24 H 1.48500 * 109.47220 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.46961 * 299.99945 * 22 20 18 26 26 N 1.46505 * 109.47502 * 285.64161 * 8 7 2 27 27 C 1.34773 * 119.99620 * 303.03761 * 26 8 7 28 28 N 1.34782 * 119.99947 * 185.05711 * 27 26 8 29 29 O 1.21588 * 120.00240 * 5.06050 * 27 26 8 30 30 H 1.08997 * 109.47340 * 89.99896 * 1 2 3 31 31 H 1.09000 * 109.47249 * 210.00080 * 1 2 3 32 32 H 1.09002 * 109.47000 * 329.99979 * 1 2 3 33 33 H 1.08005 * 119.99999 * 359.97438 * 3 2 1 34 34 H 1.08004 * 120.00506 * 179.72291 * 4 3 2 35 35 H 1.07998 * 119.99400 * 180.27599 * 5 4 3 36 36 H 1.07993 * 120.00198 * 179.83061 * 6 5 4 37 37 H 1.09005 * 109.46985 * 305.00258 * 10 8 7 38 38 H 1.09006 * 109.47385 * 64.99444 * 10 8 7 39 39 H 0.96993 * 120.00367 * 359.97438 * 13 11 10 40 40 H 1.09002 * 109.47205 * 299.99529 * 14 13 11 41 41 H 1.08994 * 109.47189 * 59.99656 * 14 13 11 42 42 H 1.09001 * 109.46976 * 59.99826 * 16 15 14 43 43 H 1.09002 * 109.47492 * 180.02562 * 16 15 14 44 44 H 1.09000 * 109.46975 * 299.99928 * 16 15 14 45 45 H 1.09003 * 109.47478 * 59.99588 * 17 15 14 46 46 H 1.08999 * 109.47526 * 180.02562 * 17 15 14 47 47 H 1.09001 * 109.46670 * 300.00147 * 17 15 14 48 48 H 0.97003 * 120.00148 * 179.97438 * 21 20 18 49 49 H 0.96993 * 120.00113 * 123.03737 * 26 8 7 50 50 H 0.96994 * 119.99639 * 0.02562 * 28 27 26 51 51 H 0.96996 * 120.00059 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0054 5 6 4.2717 -0.0001 -0.0005 6 6 3.5807 -1.1970 0.0004 7 6 2.1980 -1.1970 0.0005 8 6 1.4445 -2.5020 0.0017 9 1 0.6403 -2.4579 -0.7328 10 6 2.3995 -3.6427 -0.3555 11 6 1.6234 -4.9290 -0.4748 12 8 0.4246 -4.9331 -0.2916 13 7 2.2616 -6.0748 -0.7851 14 6 1.5070 -7.3251 -0.9016 15 6 2.4619 -8.4655 -1.2600 16 6 3.1470 -8.1573 -2.5928 17 6 3.5198 -8.6085 -0.1639 18 6 1.6857 -9.7516 -1.3804 19 1 0.6181 -9.7552 -1.2172 20 6 2.3385 -10.9237 -1.6979 21 7 3.6386 -10.9194 -1.8962 22 14 1.3764 -12.5181 -1.8465 23 1 0.3500 -12.3793 -2.9108 24 1 2.3032 -13.6249 -2.1945 25 1 0.7110 -12.8171 -0.5531 26 7 0.8783 -2.7378 1.3322 27 6 1.6845 -2.7690 2.4117 28 7 1.1801 -3.0866 3.6206 29 8 2.8669 -2.5107 2.2952 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6583 2.1327 -0.0004 34 1 4.1205 2.1326 -0.0099 35 1 5.3517 0.0000 -0.0002 36 1 4.1206 -2.1322 0.0014 37 1 2.8880 -3.4237 -1.3051 38 1 3.1529 -3.7440 0.4257 39 1 3.2204 -6.0715 -0.9320 40 1 1.0186 -7.5446 0.0479 41 1 0.7537 -7.2234 -1.6827 42 1 3.7084 -7.2269 -2.5062 43 1 3.8270 -8.9699 -2.8484 44 1 2.3934 -8.0555 -3.3737 45 1 3.0318 -8.8281 0.7857 46 1 4.2004 -9.4207 -0.4195 47 1 4.0812 -7.6782 -0.0773 48 1 4.0979 -11.7442 -2.1192 49 1 -0.0768 -2.8715 1.4361 50 1 0.2369 -3.2930 3.7135 51 1 1.7602 -3.1086 4.3976 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457985799.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:48 Heat of formation + Delta-G solvation = -52.275798 kcal Electronic energy + Delta-G solvation = -31485.683275 eV Core-core repulsion = 27384.569647 eV Total energy + Delta-G solvation = -4101.113629 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.75559 -39.03305 -38.93290 -36.45099 -35.17880 -33.77103 -33.25079 -32.80523 -31.38671 -30.87457 -29.34655 -27.02155 -25.73688 -25.72421 -25.18686 -24.09332 -21.93915 -21.57786 -20.33287 -19.62305 -18.77334 -18.53371 -17.51527 -16.92223 -16.20024 -15.76580 -15.64821 -15.40903 -15.10620 -14.76428 -14.73325 -14.54351 -14.32412 -14.17303 -13.62996 -13.53186 -13.07529 -12.98352 -12.85595 -12.71333 -12.36996 -12.18284 -12.16362 -11.99899 -11.71475 -11.33686 -11.18993 -11.10365 -10.85357 -10.84637 -10.73840 -10.38266 -10.21484 -10.18164 -9.66482 -9.63290 -9.52439 -9.25119 -9.01467 -8.79246 -8.70777 -8.60978 -8.44559 -8.29646 -6.02373 -4.12793 1.28487 1.43587 2.96385 3.10312 3.27949 3.28977 3.33593 3.36521 3.73926 3.80296 4.39068 4.50393 4.67961 4.71003 4.85791 4.92882 5.11642 5.15134 5.19903 5.24122 5.38177 5.45831 5.55382 5.58940 5.62890 5.71846 5.89306 6.01836 6.11167 6.24178 6.32458 6.44731 6.50001 6.51250 6.53534 6.60414 6.75196 6.77664 6.83408 6.90588 6.94065 7.01456 7.01860 7.05576 7.35700 7.55834 7.68706 7.98423 8.00909 8.07287 8.16420 8.38239 8.67185 8.72673 8.87897 9.52996 10.98941 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018735 B = 0.002393 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.172514 B =11699.765333 C =12025.084228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.073 4.073 3 C -0.132 4.132 4 C -0.116 4.116 5 C -0.132 4.132 6 C -0.066 4.066 7 C -0.092 4.092 8 C 0.231 3.769 9 H 0.104 0.896 10 C -0.166 4.166 11 C 0.509 3.491 12 O -0.556 6.556 13 N -0.717 5.717 14 C 0.134 3.866 15 C 0.056 3.944 16 C -0.131 4.131 17 C -0.131 4.131 18 C -0.507 4.507 19 H 0.056 0.944 20 C 0.066 3.934 21 N -0.886 5.886 22 Si 0.893 3.107 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 N -0.724 5.724 27 C 0.706 3.294 28 N -0.871 5.871 29 O -0.588 6.588 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.126 0.874 37 H 0.100 0.900 38 H 0.111 0.889 39 H 0.398 0.602 40 H 0.052 0.948 41 H 0.053 0.947 42 H 0.006 0.994 43 H 0.085 0.915 44 H 0.026 0.974 45 H 0.025 0.975 46 H 0.085 0.915 47 H 0.006 0.994 48 H 0.260 0.740 49 H 0.400 0.600 50 H 0.395 0.605 51 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.717 22.199 5.670 23.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.073 4.073 3 C -0.150 4.150 4 C -0.134 4.134 5 C -0.151 4.151 6 C -0.085 4.085 7 C -0.093 4.093 8 C 0.125 3.875 9 H 0.122 0.878 10 C -0.207 4.207 11 C 0.295 3.705 12 O -0.436 6.436 13 N -0.367 5.367 14 C 0.011 3.989 15 C 0.056 3.944 16 C -0.189 4.189 17 C -0.188 4.188 18 C -0.545 4.545 19 H 0.074 0.926 20 C -0.135 4.135 21 N -0.524 5.524 22 Si 0.721 3.279 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 N -0.379 5.379 27 C 0.404 3.596 28 N -0.438 5.438 29 O -0.466 6.466 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.136 0.864 36 H 0.144 0.856 37 H 0.118 0.882 38 H 0.129 0.871 39 H 0.233 0.767 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.025 0.975 43 H 0.104 0.896 44 H 0.045 0.955 45 H 0.044 0.956 46 H 0.104 0.896 47 H 0.025 0.975 48 H 0.071 0.929 49 H 0.235 0.765 50 H 0.222 0.778 51 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -2.452 22.242 5.463 23.034 hybrid contribution -0.590 -1.125 0.376 1.325 sum -3.042 21.118 5.839 22.120 Atomic orbital electron populations 1.20850 0.91564 1.02739 1.02298 1.19679 0.95748 0.92571 0.99343 1.20896 0.94264 0.97093 1.02727 1.21083 0.94283 0.97889 1.00150 1.21102 0.99749 0.92583 1.01625 1.21072 0.93483 0.98227 0.95682 1.19803 0.94004 0.93729 1.01758 1.19207 0.95139 0.89533 0.83614 0.87796 1.22290 1.00504 0.93200 1.04727 1.20438 0.88080 0.85296 0.76705 1.90602 1.14887 1.86806 1.51298 1.46317 1.12133 1.08603 1.69652 1.21670 0.94966 0.82205 1.00034 1.18342 0.92123 0.91468 0.92493 1.21830 1.00075 0.98824 0.98121 1.21826 0.99869 0.99413 0.97720 1.20944 0.94041 0.91807 1.47741 0.92568 1.24878 0.94891 0.98810 0.94914 1.69795 1.07524 1.27283 1.47830 0.86639 0.79762 0.82892 0.78587 1.20288 1.21314 1.20311 1.44971 1.10386 1.77217 1.05351 1.16029 0.85257 0.77608 0.80699 1.43027 1.13998 1.77536 1.09266 1.90940 1.14540 1.56197 1.84877 0.91121 0.91323 0.91843 0.86573 0.86590 0.86399 0.85634 0.88212 0.87090 0.76750 0.92993 0.92851 0.97467 0.89610 0.95472 0.95554 0.89608 0.97484 0.92936 0.76522 0.77760 0.75694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.99 9.34 36.00 0.34 -0.65 16 2 C -0.07 -0.78 5.88 -104.63 -0.62 -1.40 16 3 C -0.13 -1.34 9.70 -39.58 -0.38 -1.73 16 4 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 5 C -0.13 -1.48 10.05 -39.58 -0.40 -1.87 16 6 C -0.07 -0.81 7.35 -39.59 -0.29 -1.10 16 7 C -0.09 -1.09 4.33 -104.62 -0.45 -1.54 16 8 C 0.23 2.73 1.55 -69.08 -0.11 2.62 16 9 H 0.10 1.19 7.41 -51.93 -0.39 0.80 16 10 C -0.17 -2.16 3.81 -27.88 -0.11 -2.26 16 11 C 0.51 8.34 7.69 -10.99 -0.08 8.26 16 12 O -0.56 -10.28 15.35 5.56 0.09 -10.20 16 13 N -0.72 -12.60 4.96 -60.30 -0.30 -12.90 16 14 C 0.13 2.81 4.50 -4.04 -0.02 2.79 16 15 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 16 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 17 C -0.13 -2.97 8.08 37.16 0.30 -2.67 16 18 C -0.51 -13.24 8.01 -34.44 -0.28 -13.52 16 19 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 20 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 21 N -0.89 -23.64 9.35 55.43 0.52 -23.12 16 22 Si 0.89 20.68 29.54 -169.99 -5.02 15.65 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 N -0.72 -8.12 3.46 -59.81 -0.21 -8.32 16 27 C 0.71 8.88 8.21 -86.92 -0.71 8.17 16 28 N -0.87 -7.86 8.88 27.63 0.25 -7.61 16 29 O -0.59 -9.21 13.26 5.29 0.07 -9.14 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.57 5.89 -51.93 -0.31 0.26 16 32 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 33 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 34 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 35 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 36 H 0.13 1.53 6.03 -52.49 -0.32 1.22 16 37 H 0.10 1.11 7.89 -51.93 -0.41 0.70 16 38 H 0.11 1.55 5.53 -51.93 -0.29 1.27 16 39 H 0.40 6.51 6.16 -40.82 -0.25 6.26 16 40 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.01 0.13 6.86 -51.93 -0.36 -0.23 16 43 H 0.09 2.14 6.07 -51.93 -0.32 1.82 16 44 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.09 2.16 6.07 -51.93 -0.32 1.84 16 47 H 0.01 0.13 6.86 -51.93 -0.36 -0.23 16 48 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 49 H 0.40 3.85 8.54 -40.82 -0.35 3.50 16 50 H 0.39 2.56 8.85 -40.82 -0.36 2.20 16 51 H 0.41 3.34 8.93 -40.82 -0.36 2.97 16 LS Contribution 398.50 15.07 6.01 6.01 Total: -1.00 -31.18 398.50 -9.40 -40.58 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: -7.72 Total: 15.30 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: -3.08 Total: -6.25 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: 0.26 Total: -51.95 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: 0.16 Total: -19.33 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.18 -9.40 -40.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457985799.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.697 kcal (2) G-P(sol) polarization free energy of solvation -31.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds