Wall clock time and date at job start Wed Apr 1 2020 04:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38253 * 120.00165 * 2 1 4 4 C 1.38213 * 120.00248 * 180.25751 * 3 2 1 5 5 C 1.38267 * 119.99624 * 359.50997 * 4 3 2 6 6 C 1.38202 * 119.99980 * 0.44695 * 5 4 3 7 7 C 1.38214 * 120.00036 * 179.97438 * 2 1 3 8 8 C 1.50696 * 119.99605 * 359.97367 * 7 2 1 9 9 H 1.09000 * 109.47413 * 45.64413 * 8 7 2 10 10 C 1.53000 * 109.47197 * 165.64436 * 8 7 2 11 11 C 1.50697 * 109.47587 * 185.00105 * 10 8 7 12 12 O 1.21278 * 120.00028 * 359.97438 * 11 10 8 13 13 N 1.34775 * 120.00040 * 179.97438 * 11 10 8 14 14 C 1.46505 * 119.99845 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.46907 * 179.97438 * 14 13 11 16 16 C 1.53002 * 109.47264 * 299.99749 * 15 14 13 17 17 C 1.52998 * 109.47526 * 59.99970 * 15 14 13 18 18 C 1.50706 * 109.47116 * 180.02562 * 15 14 13 19 19 H 1.08001 * 119.99588 * 359.97438 * 18 15 14 20 20 C 1.37868 * 120.00155 * 180.02562 * 18 15 14 21 21 N 1.31515 * 120.00220 * 359.97438 * 20 18 15 22 22 Si 1.86806 * 120.00206 * 179.97438 * 20 18 15 23 23 H 1.48503 * 109.46678 * 59.99575 * 22 20 18 24 24 H 1.48500 * 109.47220 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.46961 * 299.99945 * 22 20 18 26 26 N 1.46505 * 109.47502 * 285.64161 * 8 7 2 27 27 C 1.34773 * 119.99620 * 303.03761 * 26 8 7 28 28 N 1.34782 * 119.99947 * 185.05711 * 27 26 8 29 29 O 1.21588 * 120.00240 * 5.06050 * 27 26 8 30 30 H 1.08997 * 109.47340 * 89.99896 * 1 2 3 31 31 H 1.09000 * 109.47249 * 210.00080 * 1 2 3 32 32 H 1.09002 * 109.47000 * 329.99979 * 1 2 3 33 33 H 1.08005 * 119.99999 * 359.97438 * 3 2 1 34 34 H 1.08004 * 120.00506 * 179.72291 * 4 3 2 35 35 H 1.07998 * 119.99400 * 180.27599 * 5 4 3 36 36 H 1.07993 * 120.00198 * 179.83061 * 6 5 4 37 37 H 1.09005 * 109.46985 * 305.00258 * 10 8 7 38 38 H 1.09006 * 109.47385 * 64.99444 * 10 8 7 39 39 H 0.96993 * 120.00367 * 359.97438 * 13 11 10 40 40 H 1.09002 * 109.47205 * 299.99529 * 14 13 11 41 41 H 1.08994 * 109.47189 * 59.99656 * 14 13 11 42 42 H 1.09001 * 109.46976 * 59.99826 * 16 15 14 43 43 H 1.09002 * 109.47492 * 180.02562 * 16 15 14 44 44 H 1.09000 * 109.46975 * 299.99928 * 16 15 14 45 45 H 1.09003 * 109.47478 * 59.99588 * 17 15 14 46 46 H 1.08999 * 109.47526 * 180.02562 * 17 15 14 47 47 H 1.09001 * 109.46670 * 300.00147 * 17 15 14 48 48 H 0.97003 * 120.00148 * 179.97438 * 21 20 18 49 49 H 0.96993 * 120.00113 * 123.03737 * 26 8 7 50 50 H 0.96994 * 119.99639 * 0.02562 * 28 27 26 51 51 H 0.96996 * 120.00059 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0054 5 6 4.2717 -0.0001 -0.0005 6 6 3.5807 -1.1970 0.0004 7 6 2.1980 -1.1970 0.0005 8 6 1.4445 -2.5020 0.0017 9 1 0.6403 -2.4579 -0.7328 10 6 2.3995 -3.6427 -0.3555 11 6 1.6234 -4.9290 -0.4748 12 8 0.4246 -4.9331 -0.2916 13 7 2.2616 -6.0748 -0.7851 14 6 1.5070 -7.3251 -0.9016 15 6 2.4619 -8.4655 -1.2600 16 6 3.1470 -8.1573 -2.5928 17 6 3.5198 -8.6085 -0.1639 18 6 1.6857 -9.7516 -1.3804 19 1 0.6181 -9.7552 -1.2172 20 6 2.3385 -10.9237 -1.6979 21 7 3.6386 -10.9194 -1.8962 22 14 1.3764 -12.5181 -1.8465 23 1 0.3500 -12.3793 -2.9108 24 1 2.3032 -13.6249 -2.1945 25 1 0.7110 -12.8171 -0.5531 26 7 0.8783 -2.7378 1.3322 27 6 1.6845 -2.7690 2.4117 28 7 1.1801 -3.0866 3.6206 29 8 2.8669 -2.5107 2.2952 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6583 2.1327 -0.0004 34 1 4.1205 2.1326 -0.0099 35 1 5.3517 0.0000 -0.0002 36 1 4.1206 -2.1322 0.0014 37 1 2.8880 -3.4237 -1.3051 38 1 3.1529 -3.7440 0.4257 39 1 3.2204 -6.0715 -0.9320 40 1 1.0186 -7.5446 0.0479 41 1 0.7537 -7.2234 -1.6827 42 1 3.7084 -7.2269 -2.5062 43 1 3.8270 -8.9699 -2.8484 44 1 2.3934 -8.0555 -3.3737 45 1 3.0318 -8.8281 0.7857 46 1 4.2004 -9.4207 -0.4195 47 1 4.0812 -7.6782 -0.0773 48 1 4.0979 -11.7442 -2.1192 49 1 -0.0768 -2.8715 1.4361 50 1 0.2369 -3.2930 3.7135 51 1 1.7602 -3.1086 4.3976 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457985799.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:46 Heat of formation + Delta-G solvation = -72.604129 kcal Electronic energy + Delta-G solvation = -31486.564778 eV Core-core repulsion = 27384.569647 eV Total energy + Delta-G solvation = -4101.995131 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -41.72575 -40.36018 -39.79447 -38.13422 -36.17997 -34.93515 -34.67230 -33.58039 -32.80425 -32.10512 -30.40417 -27.83688 -27.57477 -27.41213 -26.76806 -25.30714 -22.83148 -22.50072 -21.43415 -20.74849 -20.51496 -19.46419 -18.49739 -18.11396 -17.63744 -17.12321 -16.75112 -16.62247 -16.45832 -15.96895 -15.89186 -15.67125 -15.39193 -15.14760 -14.90772 -14.63000 -14.53396 -14.28899 -14.06856 -13.84145 -13.68871 -13.30656 -13.12169 -13.05222 -13.04571 -12.77568 -12.73053 -12.62600 -12.60432 -12.24468 -12.13850 -11.88834 -11.67226 -11.48463 -11.26029 -11.18786 -10.79211 -10.65327 -10.53849 -10.39754 -9.94045 -9.86363 -9.52597 -9.40130 -8.02064 -6.18302 0.48231 0.62997 1.43922 1.45029 1.51561 1.76812 2.11203 2.31317 2.36216 2.51209 2.99451 3.21420 3.67307 3.71559 3.82810 4.07247 4.11568 4.19078 4.31197 4.37052 4.47726 4.51480 4.53472 4.60277 4.71199 4.74688 4.82639 4.86000 4.96085 5.00448 5.03755 5.05273 5.11493 5.19126 5.24425 5.38306 5.38415 5.58880 5.62647 5.66204 5.66767 5.67188 5.73318 5.81186 5.99389 6.12270 6.13872 6.21672 6.23651 6.43052 6.71336 6.86329 7.17364 7.36216 7.49589 7.78540 8.96648 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018735 B = 0.002393 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.172514 B =11699.765333 C =12025.084228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.082 4.082 3 C -0.139 4.139 4 C -0.120 4.120 5 C -0.147 4.147 6 C -0.084 4.084 7 C -0.102 4.102 8 C 0.233 3.767 9 H 0.109 0.891 10 C -0.154 4.154 11 C 0.510 3.490 12 O -0.576 6.576 13 N -0.716 5.716 14 C 0.152 3.848 15 C 0.052 3.948 16 C -0.121 4.121 17 C -0.120 4.120 18 C -0.529 4.529 19 H 0.046 0.954 20 C 0.027 3.973 21 N -0.900 5.900 22 Si 0.945 3.055 23 H -0.276 1.276 24 H -0.284 1.284 25 H -0.277 1.277 26 N -0.719 5.719 27 C 0.697 3.303 28 N -0.857 5.857 29 O -0.621 6.621 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.129 0.871 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.104 0.896 39 H 0.405 0.595 40 H 0.035 0.965 41 H 0.040 0.960 42 H 0.035 0.965 43 H 0.061 0.939 44 H 0.019 0.981 45 H 0.016 0.984 46 H 0.062 0.938 47 H 0.033 0.967 48 H 0.260 0.740 49 H 0.408 0.592 50 H 0.408 0.592 51 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.210 23.837 5.819 24.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.082 4.082 3 C -0.156 4.156 4 C -0.138 4.138 5 C -0.165 4.165 6 C -0.103 4.103 7 C -0.103 4.103 8 C 0.127 3.873 9 H 0.127 0.873 10 C -0.194 4.194 11 C 0.298 3.702 12 O -0.456 6.456 13 N -0.367 5.367 14 C 0.028 3.972 15 C 0.051 3.949 16 C -0.179 4.179 17 C -0.178 4.178 18 C -0.567 4.567 19 H 0.064 0.936 20 C -0.173 4.173 21 N -0.539 5.539 22 Si 0.772 3.228 23 H -0.201 1.201 24 H -0.209 1.209 25 H -0.202 1.202 26 N -0.374 5.374 27 C 0.395 3.605 28 N -0.426 5.426 29 O -0.501 6.501 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.156 0.844 34 H 0.156 0.844 35 H 0.147 0.853 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.122 0.878 39 H 0.241 0.759 40 H 0.054 0.946 41 H 0.059 0.941 42 H 0.054 0.946 43 H 0.080 0.920 44 H 0.039 0.961 45 H 0.035 0.965 46 H 0.081 0.919 47 H 0.051 0.949 48 H 0.069 0.931 49 H 0.244 0.756 50 H 0.238 0.762 51 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -2.972 23.887 5.631 24.721 hybrid contribution -0.452 -1.582 0.361 1.685 sum -3.425 22.305 5.992 23.348 Atomic orbital electron populations 1.20881 0.90055 1.03330 1.03037 1.19977 0.97009 0.92400 0.98825 1.21228 0.94511 0.97834 1.02064 1.21398 0.94655 0.98466 0.99304 1.21333 1.00558 0.92723 1.01841 1.21148 0.93923 0.98462 0.96742 1.19812 0.93929 0.93987 1.02606 1.19188 0.95001 0.89213 0.83918 0.87326 1.22238 1.00116 0.91510 1.05562 1.20994 0.87998 0.85755 0.75499 1.90591 1.15988 1.87140 1.51899 1.46186 1.12307 1.07909 1.70265 1.21198 0.94316 0.83108 0.98570 1.18337 0.92351 0.91218 0.92971 1.21673 0.99507 0.99289 0.97412 1.21671 0.99368 0.99819 0.96967 1.21253 0.93939 0.93519 1.48002 0.93601 1.25473 0.95700 1.01250 0.94840 1.69909 1.08289 1.27699 1.48016 0.85818 0.78673 0.79931 0.78399 1.20119 1.20939 1.20226 1.44909 1.10669 1.76806 1.04994 1.16270 0.85004 0.77651 0.81588 1.42899 1.14873 1.76424 1.08408 1.90918 1.15982 1.57729 1.85508 0.90237 0.91410 0.90587 0.84450 0.84420 0.85307 0.86349 0.86237 0.87778 0.75881 0.94612 0.94140 0.94570 0.92019 0.96130 0.96480 0.91948 0.94850 0.93056 0.75623 0.76195 0.75081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.71 9.34 71.23 0.67 -1.05 16 2 C -0.08 -1.62 5.88 -19.87 -0.12 -1.73 16 3 C -0.14 -2.53 9.70 22.27 0.22 -2.32 16 4 C -0.12 -2.24 10.05 22.27 0.22 -2.02 16 5 C -0.15 -3.12 10.05 22.27 0.22 -2.89 16 6 C -0.08 -2.01 7.35 22.27 0.16 -1.84 16 7 C -0.10 -2.31 4.33 -19.87 -0.09 -2.39 16 8 C 0.23 5.23 1.55 44.24 0.07 5.29 16 9 H 0.11 2.32 7.41 -2.39 -0.02 2.31 16 10 C -0.15 -3.80 3.81 29.85 0.11 -3.69 16 11 C 0.51 16.16 7.69 87.66 0.67 16.84 16 12 O -0.58 -20.75 15.35 -3.02 -0.05 -20.79 16 13 N -0.72 -24.39 4.96 -463.07 -2.30 -26.69 16 14 C 0.15 6.36 4.50 86.38 0.39 6.74 16 15 C 0.05 2.39 0.50 -52.93 -0.03 2.37 16 16 C -0.12 -5.39 8.08 71.98 0.58 -4.80 16 17 C -0.12 -5.45 8.08 71.98 0.58 -4.87 16 18 C -0.53 -27.86 8.01 25.60 0.21 -27.65 16 19 H 0.05 2.45 7.74 -2.91 -0.02 2.42 16 20 C 0.03 1.43 5.15 84.65 0.44 1.86 16 21 N -0.90 -48.30 9.35 21.44 0.20 -48.10 16 22 Si 0.95 42.46 29.54 68.60 2.03 44.49 16 23 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 24 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 25 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 26 N -0.72 -15.29 3.46 -461.41 -1.60 -16.88 16 27 C 0.70 16.88 8.21 179.05 1.47 18.35 16 28 N -0.86 -14.41 8.88 -184.74 -1.64 -16.05 16 29 O -0.62 -19.15 13.26 -3.99 -0.05 -19.20 16 30 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.07 1.00 5.89 -2.39 -0.01 0.98 16 32 H 0.08 0.92 8.09 -2.39 -0.02 0.90 16 33 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 34 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 35 H 0.13 2.31 8.06 -2.91 -0.02 2.28 16 36 H 0.12 2.87 6.03 -2.91 -0.02 2.86 16 37 H 0.12 2.48 7.89 -2.38 -0.02 2.46 16 38 H 0.10 2.84 5.53 -2.38 -0.01 2.82 16 39 H 0.40 12.58 6.16 -92.71 -0.57 12.01 16 40 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.04 1.35 6.86 -2.39 -0.02 1.34 16 43 H 0.06 3.07 6.07 -2.39 -0.01 3.05 16 44 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.06 3.14 6.07 -2.39 -0.01 3.12 16 47 H 0.03 1.29 6.86 -2.39 -0.02 1.27 16 48 H 0.26 13.48 8.31 -92.71 -0.77 12.71 16 49 H 0.41 7.30 8.54 -92.71 -0.79 6.51 16 50 H 0.41 4.67 8.85 -92.71 -0.82 3.84 16 51 H 0.42 6.28 8.93 -92.71 -0.83 5.45 16 Total: -1.00 -66.39 398.50 0.36 -66.03 By element: Atomic # 1 Polarization: 43.01 SS G_CDS: -2.01 Total: 41.00 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: 5.78 Total: -3.80 kcal Atomic # 7 Polarization: -102.39 SS G_CDS: -5.33 Total: -107.72 kcal Atomic # 8 Polarization: -39.89 SS G_CDS: -0.10 Total: -39.99 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -66.39 0.36 -66.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457985799.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.575 kcal (2) G-P(sol) polarization free energy of solvation -66.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds