Wall clock time and date at job start Wed Apr 1 2020 04:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38251 * 119.99802 * 2 1 4 4 C 1.38211 * 119.99936 * 180.02562 * 3 2 1 5 5 C 1.38250 * 120.00023 * 359.94843 * 4 3 2 6 6 C 1.38216 * 120.00263 * 0.05170 * 5 4 3 7 7 C 1.50692 * 120.00262 * 179.97438 * 6 5 4 8 8 H 1.09007 * 109.47515 * 14.14019 * 7 6 5 9 9 C 1.52999 * 109.47443 * 254.13833 * 7 6 5 10 10 C 1.50697 * 109.47404 * 174.99904 * 9 7 6 11 11 O 1.21281 * 120.00093 * 0.02562 * 10 9 7 12 12 N 1.34780 * 119.99937 * 179.97438 * 10 9 7 13 13 C 1.46498 * 119.99628 * 179.97438 * 12 10 9 14 14 C 1.53008 * 109.46956 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.46746 * 300.00237 * 14 13 12 16 16 C 1.53000 * 109.47059 * 59.99857 * 14 13 12 17 17 C 1.50697 * 109.46899 * 180.02562 * 14 13 12 18 18 H 1.07993 * 120.00500 * 359.97438 * 17 14 13 19 19 C 1.37887 * 119.99570 * 179.97438 * 17 14 13 20 20 N 1.31514 * 119.99916 * 0.02562 * 19 17 14 21 21 Si 1.86797 * 119.99660 * 179.97438 * 19 17 14 22 22 H 1.48503 * 109.46996 * 90.00512 * 21 19 17 23 23 H 1.48504 * 109.46958 * 210.00158 * 21 19 17 24 24 H 1.48496 * 109.47631 * 330.00434 * 21 19 17 25 25 N 1.46501 * 109.47056 * 134.13622 * 7 6 5 26 26 C 1.34775 * 120.00117 * 273.86108 * 25 7 6 27 27 N 1.34772 * 119.99874 * 184.99305 * 26 25 7 28 28 O 1.21587 * 119.99962 * 4.99522 * 26 25 7 29 29 C 1.38210 * 120.00099 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.47682 * 270.02271 * 1 2 3 31 31 H 1.09000 * 109.47168 * 30.02609 * 1 2 3 32 32 H 1.09005 * 109.46852 * 150.02266 * 1 2 3 33 33 H 1.08005 * 120.00244 * 359.97438 * 3 2 1 34 34 H 1.08000 * 119.99960 * 180.02562 * 4 3 2 35 35 H 1.07999 * 120.00362 * 180.32365 * 5 4 3 36 36 H 1.09003 * 109.46679 * 295.00357 * 9 7 6 37 37 H 1.08998 * 109.47071 * 54.99746 * 9 7 6 38 38 H 0.97003 * 120.00113 * 0.02562 * 12 10 9 39 39 H 1.09003 * 109.47754 * 300.00287 * 13 12 10 40 40 H 1.08998 * 109.47262 * 60.00451 * 13 12 10 41 41 H 1.08996 * 109.47385 * 59.99751 * 15 14 13 42 42 H 1.09002 * 109.46931 * 180.02562 * 15 14 13 43 43 H 1.09007 * 109.47465 * 299.99610 * 15 14 13 44 44 H 1.09003 * 109.46948 * 60.00708 * 16 14 13 45 45 H 1.09002 * 109.46945 * 180.02562 * 16 14 13 46 46 H 1.08996 * 109.47129 * 300.00284 * 16 14 13 47 47 H 0.96998 * 119.99839 * 179.97438 * 20 19 17 48 48 H 0.97006 * 119.99765 * 93.86682 * 25 7 6 49 49 H 0.97006 * 120.00390 * 0.02562 * 27 26 25 50 50 H 0.97007 * 120.00600 * 180.02562 * 27 26 25 51 51 H 1.08000 * 120.00256 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5803 1.1973 -0.0005 5 6 4.2716 0.0001 0.0000 6 6 3.5806 -1.1969 0.0000 7 6 4.3341 -2.5020 0.0000 8 1 5.3789 -2.3184 0.2511 9 6 4.2478 -3.1408 -1.3875 10 6 5.1015 -4.3821 -1.4231 11 8 5.7180 -4.7227 -0.4357 12 7 5.1791 -5.1145 -2.5519 13 6 6.0095 -6.3209 -2.5866 14 6 5.9230 -6.9599 -3.9742 15 6 4.4697 -7.3321 -4.2744 16 6 6.4226 -5.9664 -5.0251 17 6 6.7767 -8.2012 -4.0096 18 1 7.3264 -8.5039 -3.1307 19 6 6.8561 -8.9505 -5.1644 20 7 6.1872 -8.5815 -6.2349 21 14 7.9149 -10.4888 -5.2086 22 1 7.1012 -11.6616 -4.7991 23 1 8.4264 -10.6982 -6.5870 24 1 9.0586 -10.3296 -4.2750 25 7 3.7453 -3.4058 0.9913 26 6 4.1454 -3.3486 2.2770 27 7 3.6789 -4.2454 3.1684 28 8 4.9271 -2.4880 2.6327 29 6 2.1981 -1.1969 0.0005 30 1 -0.3634 0.0004 1.0276 31 1 -0.3633 0.8897 -0.5142 32 1 -0.3633 -0.8902 -0.5135 33 1 1.6582 2.1327 -0.0004 34 1 4.1203 2.1327 -0.0001 35 1 5.3516 0.0000 0.0049 36 1 3.2123 -3.4056 -1.6017 37 1 4.6041 -2.4332 -2.1361 38 1 4.6858 -4.8424 -3.3415 39 1 7.0450 -6.0557 -2.3730 40 1 5.6539 -7.0285 -1.8376 41 1 3.8519 -6.4345 -4.2485 42 1 4.4081 -7.7877 -5.2627 43 1 4.1137 -8.0399 -3.5257 44 1 7.4580 -5.7012 -4.8112 45 1 6.3605 -6.4215 -6.0136 46 1 5.8048 -5.0688 -4.9992 47 1 6.2433 -9.1084 -7.0474 48 1 3.0675 -4.0455 0.7222 49 1 3.0555 -4.9322 2.8846 50 1 3.9665 -4.2041 4.0939 51 1 1.6581 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457990102.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:51 Heat of formation + Delta-G solvation = -83.525613 kcal Electronic energy + Delta-G solvation = -30797.623258 eV Core-core repulsion = 26695.154535 eV Total energy + Delta-G solvation = -4102.468722 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.50764 -40.40634 -39.97600 -38.16139 -36.46082 -34.94167 -34.71289 -33.48843 -32.82977 -31.95111 -30.71994 -27.79647 -27.53644 -27.45685 -26.87747 -25.04050 -23.17222 -22.11390 -21.56903 -21.14156 -20.56627 -19.26937 -18.54303 -18.11454 -17.64996 -17.32070 -16.73778 -16.66466 -16.40751 -16.22036 -16.04165 -15.57760 -15.29775 -15.05140 -14.87807 -14.71127 -14.50625 -14.43025 -14.09211 -13.91818 -13.76091 -13.39704 -13.18530 -13.06454 -12.99199 -12.83903 -12.64411 -12.60538 -12.41958 -12.22300 -12.13541 -12.03155 -11.81628 -11.46030 -11.41195 -11.24551 -10.82608 -10.68005 -10.64677 -10.38982 -10.02241 -9.86456 -9.64132 -9.46066 -8.02312 -6.17600 0.43063 0.53793 1.41353 1.44868 1.52579 1.76530 1.99669 2.28270 2.34504 2.50224 2.89964 3.21350 3.67186 3.68428 3.77171 3.93048 4.07814 4.22000 4.27744 4.31372 4.48399 4.53622 4.55380 4.64597 4.68431 4.74338 4.75047 4.88689 4.89601 5.01877 5.03580 5.08774 5.13847 5.21412 5.22241 5.33974 5.40599 5.47983 5.61286 5.64613 5.68033 5.69872 5.72038 5.74832 5.93613 6.07243 6.16750 6.18201 6.24456 6.45051 6.74398 6.87163 7.13083 7.41059 7.50166 7.72309 8.96265 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015200 B = 0.002321 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.641016 B =12061.914944 C =12956.196789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.096 4.096 3 C -0.128 4.128 4 C -0.123 4.123 5 C -0.127 4.127 6 C -0.097 4.097 7 C 0.228 3.772 8 H 0.065 0.935 9 C -0.134 4.134 10 C 0.502 3.498 11 O -0.581 6.581 12 N -0.710 5.710 13 C 0.151 3.849 14 C 0.052 3.948 15 C -0.120 4.120 16 C -0.122 4.122 17 C -0.529 4.529 18 H 0.041 0.959 19 C 0.029 3.971 20 N -0.898 5.898 21 Si 0.941 3.059 22 H -0.278 1.278 23 H -0.283 1.283 24 H -0.278 1.278 25 N -0.716 5.716 26 C 0.705 3.295 27 N -0.852 5.852 28 O -0.645 6.645 29 C -0.108 4.108 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.140 0.860 34 H 0.136 0.864 35 H 0.115 0.885 36 H 0.133 0.867 37 H 0.130 0.870 38 H 0.409 0.591 39 H 0.030 0.970 40 H 0.038 0.962 41 H 0.041 0.959 42 H 0.060 0.940 43 H 0.018 0.982 44 H 0.014 0.986 45 H 0.061 0.939 46 H 0.040 0.960 47 H 0.260 0.740 48 H 0.407 0.593 49 H 0.411 0.589 50 H 0.418 0.582 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.590 16.645 10.103 24.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.096 4.096 3 C -0.146 4.146 4 C -0.141 4.141 5 C -0.146 4.146 6 C -0.098 4.098 7 C 0.122 3.878 8 H 0.084 0.916 9 C -0.174 4.174 10 C 0.289 3.711 11 O -0.461 6.461 12 N -0.362 5.362 13 C 0.027 3.973 14 C 0.051 3.949 15 C -0.178 4.178 16 C -0.180 4.180 17 C -0.568 4.568 18 H 0.060 0.940 19 C -0.170 4.170 20 N -0.537 5.537 21 Si 0.769 3.231 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.203 1.203 25 N -0.370 5.370 26 C 0.403 3.597 27 N -0.420 5.420 28 O -0.527 6.527 29 C -0.126 4.126 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.157 0.843 34 H 0.154 0.846 35 H 0.133 0.867 36 H 0.151 0.849 37 H 0.148 0.852 38 H 0.247 0.753 39 H 0.049 0.951 40 H 0.056 0.944 41 H 0.060 0.940 42 H 0.079 0.921 43 H 0.037 0.963 44 H 0.034 0.966 45 H 0.080 0.920 46 H 0.059 0.941 47 H 0.070 0.930 48 H 0.243 0.757 49 H 0.241 0.759 50 H 0.250 0.750 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -14.520 17.061 10.716 24.834 hybrid contribution 0.617 -1.675 -0.229 1.799 sum -13.903 15.386 10.487 23.238 Atomic orbital electron populations 1.20815 0.89393 1.03785 1.02780 1.20235 0.97420 0.92903 0.99090 1.21337 0.94140 0.98498 1.00580 1.21334 0.94915 0.98053 0.99816 1.21156 1.00080 0.92702 1.00678 1.20109 0.94572 0.94173 1.00949 1.19138 0.96335 0.85869 0.86487 0.91641 1.22026 1.02736 0.94765 0.97857 1.21138 0.82066 0.85431 0.82430 1.90722 1.47464 1.72178 1.35755 1.46127 1.48921 1.26583 1.14590 1.21180 0.92466 0.85014 0.98667 1.18342 0.94110 0.93005 0.89418 1.21659 0.95770 0.98565 1.01760 1.21685 0.97466 0.96773 1.02070 1.21290 1.28382 1.09629 0.97452 0.94036 1.25418 0.96508 0.99688 0.95435 1.69898 1.42175 1.39422 1.02169 0.85818 0.79378 0.80867 0.77086 1.20391 1.20851 1.20341 1.44738 1.44999 1.41025 1.06280 1.16124 0.80078 0.81675 0.81824 1.42765 1.52541 1.34312 1.12427 1.90902 1.41284 1.40774 1.79743 1.20950 0.92759 0.98517 1.00417 0.90903 0.90520 0.90605 0.84263 0.84572 0.86729 0.84868 0.85195 0.75328 0.95112 0.94384 0.93978 0.92096 0.96254 0.96633 0.91987 0.94087 0.93044 0.75740 0.75850 0.74981 0.84781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 10.01 71.24 0.71 -0.42 16 2 C -0.10 -1.54 5.88 -19.87 -0.12 -1.65 16 3 C -0.13 -2.07 9.70 22.27 0.22 -1.86 16 4 C -0.12 -2.28 10.05 22.27 0.22 -2.06 16 5 C -0.13 -2.84 9.67 22.27 0.22 -2.62 16 6 C -0.10 -2.07 4.92 -19.87 -0.10 -2.17 16 7 C 0.23 5.41 1.71 44.24 0.08 5.48 16 8 H 0.07 2.09 7.23 -2.38 -0.02 2.07 16 9 C -0.13 -2.58 5.17 29.85 0.15 -2.42 16 10 C 0.50 14.78 7.69 87.66 0.67 15.46 16 11 O -0.58 -22.49 15.35 -3.03 -0.05 -22.54 16 12 N -0.71 -21.86 4.96 -463.05 -2.30 -24.16 16 13 C 0.15 6.13 4.50 86.38 0.39 6.52 16 14 C 0.05 2.31 0.50 -52.93 -0.03 2.28 16 15 C -0.12 -5.02 8.08 71.98 0.58 -4.44 16 16 C -0.12 -5.26 8.08 71.98 0.58 -4.68 16 17 C -0.53 -27.57 8.01 25.60 0.21 -27.37 16 18 H 0.04 2.23 7.74 -2.91 -0.02 2.21 16 19 C 0.03 1.53 5.15 84.66 0.44 1.96 16 20 N -0.90 -47.08 9.35 21.45 0.20 -46.88 16 21 Si 0.94 42.24 29.54 68.60 2.03 44.27 16 22 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 23 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 24 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 25 N -0.72 -16.03 3.68 -461.42 -1.70 -17.73 16 26 C 0.70 19.47 8.80 179.06 1.58 21.05 16 27 N -0.85 -15.52 8.88 -184.75 -1.64 -17.16 16 28 O -0.65 -24.30 16.88 -3.99 -0.07 -24.37 16 29 C -0.11 -1.89 8.93 22.27 0.20 -1.69 16 30 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.08 0.62 8.09 -2.39 -0.02 0.60 16 32 H 0.08 0.64 8.09 -2.38 -0.02 0.62 16 33 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 34 H 0.14 1.97 8.06 -2.91 -0.02 1.94 16 35 H 0.11 2.61 7.99 -2.91 -0.02 2.59 16 36 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.41 10.60 6.16 -92.71 -0.57 10.03 16 39 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.04 1.42 6.86 -2.39 -0.02 1.40 16 42 H 0.06 2.89 6.07 -2.39 -0.01 2.87 16 43 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 44 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.06 2.99 6.07 -2.39 -0.01 2.98 16 46 H 0.04 1.44 6.86 -2.39 -0.02 1.42 16 47 H 0.26 13.16 8.31 -92.71 -0.77 12.39 16 48 H 0.41 6.64 8.63 -92.70 -0.80 5.84 16 49 H 0.41 4.77 8.85 -92.70 -0.82 3.95 16 50 H 0.42 6.80 8.93 -92.70 -0.83 5.97 16 51 H 0.13 1.78 7.90 -2.91 -0.02 1.76 16 Total: -1.00 -73.84 413.69 0.44 -73.40 By element: Atomic # 1 Polarization: 35.84 SS G_CDS: -2.04 Total: 33.80 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: 6.00 Total: 1.37 kcal Atomic # 7 Polarization: -100.50 SS G_CDS: -5.43 Total: -105.93 kcal Atomic # 8 Polarization: -46.79 SS G_CDS: -0.11 Total: -46.91 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -73.84 0.44 -73.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457990102.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.128 kcal (2) G-P(sol) polarization free energy of solvation -73.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds