Wall clock time and date at job start Wed Apr 1 2020 04:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38257 * 120.00307 * 2 1 4 4 C 1.38214 * 120.00354 * 179.97438 * 3 2 1 5 5 C 1.38256 * 119.99862 * 359.75214 * 4 3 2 6 6 C 1.38212 * 119.99862 * 0.50208 * 5 4 3 7 7 C 1.50703 * 120.00137 * 179.76772 * 6 5 4 8 8 H 1.09004 * 109.47002 * 89.53798 * 7 6 5 9 9 C 1.53000 * 109.47228 * 209.53835 * 7 6 5 10 10 C 1.50697 * 109.46939 * 184.99759 * 9 7 6 11 11 O 1.21283 * 120.00453 * 0.02562 * 10 9 7 12 12 N 1.34778 * 119.99788 * 179.97438 * 10 9 7 13 13 C 1.46505 * 119.99971 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.47121 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.47191 * 300.00451 * 14 13 12 16 16 C 1.53003 * 109.46842 * 60.00652 * 14 13 12 17 17 C 1.50697 * 109.46939 * 180.02562 * 14 13 12 18 18 H 1.08004 * 120.00491 * 0.02562 * 17 14 13 19 19 C 1.37878 * 120.00040 * 179.97438 * 17 14 13 20 20 N 1.31515 * 119.99934 * 0.02562 * 19 17 14 21 21 Si 1.86798 * 120.00156 * 180.02562 * 19 17 14 22 22 H 1.48499 * 109.47335 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47217 * 120.00111 * 21 19 17 24 24 H 1.48497 * 109.47514 * 239.99980 * 21 19 17 25 25 N 1.46502 * 109.46879 * 329.54025 * 7 6 5 26 26 C 1.34772 * 119.99841 * 296.43098 * 25 7 6 27 27 N 1.34780 * 119.99749 * 185.41833 * 26 25 7 28 28 O 1.21582 * 120.00525 * 5.41683 * 26 25 7 29 29 C 1.38215 * 120.00122 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.47466 * 270.02151 * 1 2 3 31 31 H 1.09004 * 109.47233 * 30.02340 * 1 2 3 32 32 H 1.09002 * 109.47150 * 150.01763 * 1 2 3 33 33 H 1.08004 * 119.99542 * 0.02562 * 3 2 1 34 34 H 1.07998 * 120.00106 * 180.02562 * 4 3 2 35 35 H 1.07991 * 120.00154 * 180.27527 * 5 4 3 36 36 H 1.08997 * 109.47327 * 305.00434 * 9 7 6 37 37 H 1.09001 * 109.46840 * 65.00397 * 9 7 6 38 38 H 0.96999 * 120.00190 * 0.02562 * 12 10 9 39 39 H 1.08997 * 109.47238 * 300.01103 * 13 12 10 40 40 H 1.09006 * 109.46821 * 60.00459 * 13 12 10 41 41 H 1.08998 * 109.47066 * 59.99973 * 15 14 13 42 42 H 1.09005 * 109.46964 * 180.02562 * 15 14 13 43 43 H 1.08997 * 109.46792 * 299.99967 * 15 14 13 44 44 H 1.08997 * 109.47013 * 59.99988 * 16 14 13 45 45 H 1.08997 * 109.46939 * 179.97438 * 16 14 13 46 46 H 1.08998 * 109.46634 * 299.99591 * 16 14 13 47 47 H 0.96997 * 120.00295 * 179.97438 * 20 19 17 48 48 H 0.96996 * 119.99522 * 116.15243 * 25 7 6 49 49 H 0.96997 * 119.99962 * 0.02562 * 27 26 25 50 50 H 0.97003 * 120.00209 * 179.97438 * 27 26 25 51 51 H 1.08006 * 119.99973 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0000 0.0063 6 6 3.5806 -1.1969 0.0009 7 6 4.3341 -2.5021 0.0019 8 1 4.5183 -2.8145 1.0298 9 6 3.5054 -3.5699 -0.7150 10 6 4.2017 -4.9021 -0.6075 11 8 5.2566 -4.9891 -0.0154 12 7 3.6515 -5.9972 -1.1685 13 6 4.3287 -7.2922 -1.0645 14 6 3.4999 -8.3600 -1.7813 15 6 2.1176 -8.4536 -1.1321 16 6 3.3464 -7.9818 -3.2558 17 6 4.1961 -9.6922 -1.6737 18 1 5.1356 -9.7696 -1.1465 19 6 3.6333 -10.8125 -2.2475 20 7 2.4892 -10.7184 -2.8891 21 14 4.4960 -12.4639 -2.1136 22 1 5.7575 -12.3028 -1.3469 23 1 3.6114 -13.4292 -1.4129 24 1 4.8046 -12.9730 -3.4741 25 7 5.6125 -2.3284 -0.6923 26 6 5.6304 -2.0127 -2.0024 27 7 6.8018 -1.9601 -2.6669 28 8 4.5899 -1.7755 -2.5849 29 6 2.1980 -1.1970 0.0005 30 1 -0.3634 0.0004 1.0276 31 1 -0.3634 0.8898 -0.5142 32 1 -0.3633 -0.8902 -0.5136 33 1 1.6583 2.1326 0.0004 34 1 4.1204 2.1326 0.0010 35 1 5.3516 0.0000 0.0112 36 1 2.5204 -3.6364 -0.2529 37 1 3.3965 -3.3007 -1.7656 38 1 2.8077 -5.9277 -1.6417 39 1 5.3133 -7.2255 -1.5272 40 1 4.4385 -7.5614 -0.0140 41 1 1.6139 -7.4901 -1.2096 42 1 1.5273 -9.2148 -1.6425 43 1 2.2270 -8.7231 -0.0817 44 1 4.3312 -7.9151 -3.7182 45 1 2.7564 -8.7428 -3.7666 46 1 2.8426 -7.0183 -3.3332 47 1 2.0934 -11.5064 -3.2930 48 1 6.4459 -2.4366 -0.2080 49 1 7.6319 -2.1498 -2.2023 50 1 6.8147 -1.7333 -3.6100 51 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457990103.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:57 Heat of formation + Delta-G solvation = -53.092833 kcal Electronic energy + Delta-G solvation = -31230.916602 eV Core-core repulsion = 27129.767544 eV Total energy + Delta-G solvation = -4101.149058 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.70527 -39.04934 -38.96208 -36.45298 -35.30102 -33.79012 -33.23238 -32.61893 -31.51714 -30.89368 -29.34989 -26.99017 -25.81466 -25.71559 -25.20919 -24.01820 -21.99743 -21.72067 -20.17472 -19.65511 -18.78123 -18.49937 -17.48142 -17.03467 -16.42460 -15.74487 -15.55259 -15.45384 -15.07013 -14.86685 -14.56982 -14.54141 -14.30548 -14.12025 -13.78964 -13.53580 -13.18188 -12.96268 -12.86209 -12.81188 -12.41613 -12.23079 -12.15958 -11.85455 -11.71501 -11.34945 -11.19784 -11.10056 -11.02235 -10.86930 -10.66550 -10.37880 -10.20750 -10.13189 -9.66260 -9.62627 -9.50313 -9.24528 -9.09388 -8.80816 -8.76345 -8.57218 -8.44121 -8.28338 -6.02110 -4.12252 1.30454 1.35743 2.90658 3.11791 3.26388 3.26446 3.35076 3.39189 3.65632 3.83547 4.39639 4.43630 4.66369 4.72329 4.79116 4.98213 5.02331 5.15292 5.24546 5.26974 5.32554 5.43431 5.46695 5.56601 5.63181 5.69429 5.96666 6.00439 6.04282 6.25049 6.33228 6.35309 6.41295 6.52141 6.52631 6.61925 6.73483 6.78787 6.84616 6.89185 6.95184 6.96500 7.02818 7.07225 7.36749 7.56673 7.69571 7.96807 8.01713 8.08832 8.17708 8.38996 8.65693 8.74671 8.88989 9.53556 10.99297 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016471 B = 0.002443 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.534514 B =11460.332541 C =12392.081487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.085 4.085 3 C -0.126 4.126 4 C -0.117 4.117 5 C -0.106 4.106 6 C -0.073 4.073 7 C 0.229 3.771 8 H 0.108 0.892 9 C -0.167 4.167 10 C 0.508 3.492 11 O -0.556 6.556 12 N -0.717 5.717 13 C 0.134 3.866 14 C 0.056 3.944 15 C -0.131 4.131 16 C -0.131 4.131 17 C -0.505 4.505 18 H 0.057 0.943 19 C 0.065 3.935 20 N -0.885 5.885 21 Si 0.893 3.107 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.285 1.285 25 N -0.727 5.727 26 C 0.706 3.294 27 N -0.870 5.870 28 O -0.586 6.586 29 C -0.111 4.111 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.115 0.885 36 H 0.099 0.901 37 H 0.119 0.881 38 H 0.398 0.602 39 H 0.051 0.949 40 H 0.053 0.947 41 H 0.006 0.994 42 H 0.085 0.915 43 H 0.026 0.974 44 H 0.025 0.975 45 H 0.085 0.915 46 H 0.007 0.993 47 H 0.259 0.741 48 H 0.401 0.599 49 H 0.395 0.605 50 H 0.412 0.588 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.404 22.801 5.057 23.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.085 4.085 3 C -0.144 4.144 4 C -0.135 4.135 5 C -0.124 4.124 6 C -0.074 4.074 7 C 0.123 3.877 8 H 0.126 0.874 9 C -0.208 4.208 10 C 0.294 3.706 11 O -0.436 6.436 12 N -0.367 5.367 13 C 0.011 3.989 14 C 0.055 3.945 15 C -0.188 4.188 16 C -0.188 4.188 17 C -0.543 4.543 18 H 0.075 0.925 19 C -0.136 4.136 20 N -0.524 5.524 21 Si 0.721 3.279 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.211 1.211 25 N -0.382 5.382 26 C 0.404 3.596 27 N -0.438 5.438 28 O -0.464 6.464 29 C -0.129 4.129 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.133 0.867 36 H 0.117 0.883 37 H 0.137 0.863 38 H 0.233 0.767 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.025 0.975 42 H 0.104 0.896 43 H 0.045 0.955 44 H 0.044 0.956 45 H 0.104 0.896 46 H 0.025 0.975 47 H 0.069 0.931 48 H 0.235 0.765 49 H 0.223 0.777 50 H 0.244 0.756 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.056 22.727 5.027 23.300 hybrid contribution 0.926 -0.991 -0.260 1.381 sum 1.981 21.736 4.767 22.341 Atomic orbital electron populations 1.20787 0.91295 1.02826 1.02171 1.19856 0.95946 0.93099 0.99615 1.20958 0.94231 0.97331 1.01910 1.21028 0.94315 0.97691 1.00493 1.20774 0.99498 0.91818 1.00348 1.20040 0.93801 0.94757 0.98843 1.19242 0.82029 0.90322 0.96152 0.87410 1.22314 1.00071 0.92489 1.05914 1.20456 0.85639 0.85656 0.78826 1.90608 1.23044 1.86402 1.43543 1.46313 1.25933 1.09059 1.55410 1.21667 0.95937 0.81017 1.00237 1.18354 0.92382 0.92087 0.91676 1.21827 0.99034 0.98778 0.99198 1.21824 0.99626 0.98163 0.99220 1.21023 1.06824 0.91862 1.34633 0.92465 1.24887 0.94890 0.98858 0.94934 1.69815 1.17518 1.29148 1.35935 0.86525 0.79736 0.83927 0.77746 1.19796 1.21057 1.21068 1.44890 1.09167 1.75493 1.08615 1.15992 0.84233 0.77530 0.81799 1.43014 1.07781 1.78331 1.14635 1.90937 1.31078 1.56445 1.67909 1.20921 0.93309 0.97779 1.00888 0.91283 0.91735 0.91387 0.86542 0.86538 0.86725 0.88264 0.86347 0.76749 0.93036 0.92861 0.97465 0.89605 0.95478 0.95560 0.89611 0.97451 0.93062 0.76506 0.77710 0.75625 0.85772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 10.01 36.00 0.36 -0.56 16 2 C -0.09 -0.90 5.88 -104.63 -0.62 -1.51 16 3 C -0.13 -1.28 9.70 -39.58 -0.38 -1.66 16 4 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 5 C -0.11 -1.19 8.80 -39.58 -0.35 -1.53 16 6 C -0.07 -0.86 4.41 -104.62 -0.46 -1.32 16 7 C 0.23 2.72 2.58 -69.08 -0.18 2.54 16 8 H 0.11 1.22 7.96 -51.93 -0.41 0.81 16 9 C -0.17 -2.23 4.47 -27.88 -0.12 -2.36 16 10 C 0.51 8.52 7.69 -10.99 -0.08 8.43 16 11 O -0.56 -10.49 15.35 5.55 0.09 -10.41 16 12 N -0.72 -12.84 4.96 -60.29 -0.30 -13.14 16 13 C 0.13 2.85 4.50 -4.04 -0.02 2.83 16 14 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 15 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 16 C -0.13 -3.01 8.08 37.16 0.30 -2.71 16 17 C -0.50 -13.26 8.01 -34.44 -0.28 -13.53 16 18 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 19 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 20 N -0.89 -23.72 9.35 55.43 0.52 -23.20 16 21 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 22 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 N -0.73 -8.14 3.46 -59.81 -0.21 -8.35 16 26 C 0.71 9.00 7.74 -86.92 -0.67 8.33 16 27 N -0.87 -7.89 8.88 27.63 0.25 -7.64 16 28 O -0.59 -9.61 14.31 5.29 0.08 -9.54 16 29 C -0.11 -1.25 8.79 -39.58 -0.35 -1.60 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 32 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 33 H 0.12 0.94 8.06 -52.48 -0.42 0.51 16 34 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 35 H 0.11 1.16 7.39 -52.49 -0.39 0.77 16 36 H 0.10 1.11 6.21 -51.93 -0.32 0.78 16 37 H 0.12 1.79 5.96 -51.93 -0.31 1.48 16 38 H 0.40 6.66 6.16 -40.82 -0.25 6.41 16 39 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.01 0.13 6.86 -51.93 -0.36 -0.23 16 42 H 0.09 2.15 6.07 -51.93 -0.32 1.83 16 43 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.09 2.17 6.07 -51.93 -0.32 1.86 16 46 H 0.01 0.14 6.86 -51.93 -0.36 -0.22 16 47 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 48 H 0.40 3.70 8.85 -40.82 -0.36 3.34 16 49 H 0.40 2.51 8.85 -40.82 -0.36 2.15 16 50 H 0.41 3.39 8.93 -40.82 -0.36 3.02 16 51 H 0.12 1.25 6.05 -52.48 -0.32 0.94 16 LS Contribution 402.90 15.07 6.07 6.07 Total: -1.00 -31.95 402.90 -9.42 -41.37 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: -7.77 Total: 15.16 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: -3.12 Total: -6.06 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: 0.26 Total: -52.33 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: 0.16 Total: -19.94 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.95 -9.42 -41.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457990103.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.721 kcal (2) G-P(sol) polarization free energy of solvation -31.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds