Wall clock time and date at job start Wed Apr 1 2020 05:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38363 * 119.85393 * 2 1 4 4 C 1.37956 * 120.14702 * 179.97438 * 3 2 1 5 5 C 1.39576 * 119.84932 * 0.28830 * 4 3 2 6 6 C 1.47851 * 120.13897 * 179.71861 * 5 4 3 7 7 O 1.21548 * 120.00104 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99404 * 179.97438 * 6 5 4 9 9 C 1.46501 * 119.99572 * 180.02562 * 8 6 5 10 10 C 1.53003 * 109.47108 * 180.02562 * 9 8 6 11 11 N 1.46501 * 109.47105 * 179.97438 * 10 9 8 12 12 C 1.34775 * 119.99940 * 179.97438 * 11 10 9 13 13 O 1.21588 * 119.99632 * 0.02562 * 12 11 10 14 14 N 1.34774 * 119.99798 * 180.02562 * 12 11 10 15 15 C 1.46503 * 119.99532 * 180.02562 * 14 12 11 16 16 C 1.53007 * 109.46911 * 180.02562 * 15 14 12 17 17 C 1.52995 * 109.47021 * 300.00374 * 16 15 14 18 18 C 1.53002 * 109.46720 * 60.00136 * 16 15 14 19 19 C 1.50694 * 109.46916 * 179.97438 * 16 15 14 20 20 H 1.07997 * 120.00522 * 0.02562 * 19 16 15 21 21 C 1.37885 * 119.99629 * 179.97438 * 19 16 15 22 22 N 1.31508 * 120.00317 * 0.02562 * 21 19 16 23 23 Si 1.86803 * 119.99932 * 180.02562 * 21 19 16 24 24 H 1.48501 * 109.46920 * 89.99948 * 23 21 19 25 25 H 1.48493 * 109.47292 * 210.00416 * 23 21 19 26 26 H 1.48504 * 109.47006 * 330.00194 * 23 21 19 27 27 C 1.39570 * 119.71446 * 359.45852 * 5 4 3 28 28 C 1.37965 * 119.85310 * 0.51608 * 27 5 4 29 29 H 1.09004 * 109.47541 * 89.99459 * 1 2 3 30 30 H 1.08999 * 109.46991 * 209.99514 * 1 2 3 31 31 H 1.08999 * 109.47659 * 329.99637 * 1 2 3 32 32 H 1.08008 * 119.92400 * 359.96175 * 3 2 1 33 33 H 1.08002 * 120.07114 * 180.02562 * 4 3 2 34 34 H 0.96996 * 120.00513 * 0.02562 * 8 6 5 35 35 H 1.09004 * 109.46896 * 299.99924 * 9 8 6 36 36 H 1.08997 * 109.47343 * 59.99699 * 9 8 6 37 37 H 1.08996 * 109.46727 * 300.00236 * 10 9 8 38 38 H 1.09000 * 109.46589 * 59.99886 * 10 9 8 39 39 H 0.96996 * 119.99917 * 0.02562 * 11 10 9 40 40 H 0.96996 * 120.00060 * 0.02562 * 14 12 11 41 41 H 1.08997 * 109.47421 * 299.99678 * 15 14 12 42 42 H 1.09005 * 109.47175 * 60.00711 * 15 14 12 43 43 H 1.09001 * 109.47498 * 60.00330 * 17 16 15 44 44 H 1.09000 * 109.47241 * 179.97438 * 17 16 15 45 45 H 1.08997 * 109.47109 * 299.99509 * 17 16 15 46 46 H 1.09002 * 109.47125 * 60.00308 * 18 16 15 47 47 H 1.09007 * 109.46958 * 179.97438 * 18 16 15 48 48 H 1.08996 * 109.47368 * 299.99966 * 18 16 15 49 49 H 0.96995 * 120.00392 * 179.97438 * 22 21 19 50 50 H 1.07995 * 120.07846 * 180.23172 * 27 5 4 51 51 H 1.07994 * 119.93049 * 179.74166 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1957 1.2000 0.0000 4 6 3.5752 1.2071 0.0005 5 6 4.2761 0.0001 -0.0050 6 6 5.7546 0.0002 -0.0108 7 8 6.3623 1.0528 -0.0111 8 7 6.4285 -1.1671 -0.0156 9 6 7.8935 -1.1670 -0.0207 10 6 8.4035 -2.6095 -0.0262 11 7 9.8685 -2.6094 -0.0319 12 6 10.5424 -3.7766 -0.0369 13 8 9.9345 -4.8296 -0.0370 14 7 11.8902 -3.7765 -0.0416 15 6 12.6227 -5.0453 -0.0476 16 6 14.1270 -4.7656 -0.0515 17 6 14.4926 -3.9597 -1.2995 18 6 14.5004 -3.9669 1.1989 19 6 14.8804 -6.0707 -0.0570 20 1 14.3405 -7.0060 -0.0580 21 6 16.2592 -6.0706 -0.0617 22 7 16.9168 -4.9317 -0.0610 23 14 17.1933 -7.6883 -0.0692 24 1 17.4359 -8.1133 -1.4713 25 1 18.4932 -7.5126 0.6268 26 1 16.3931 -8.7252 0.6308 27 6 3.5753 -1.2069 0.0004 28 6 2.1957 -1.2000 0.0004 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5139 32 1 1.6520 2.1333 -0.0006 33 1 4.1116 2.1445 0.0010 34 1 5.9435 -2.0071 -0.0157 35 1 8.2537 -0.6513 -0.9109 36 1 8.2599 -0.6550 0.8690 37 1 8.0433 -3.1256 0.8637 38 1 8.0371 -3.1210 -0.9162 39 1 10.3535 -1.7694 -0.0314 40 1 12.3751 -2.9365 -0.0411 41 1 12.3626 -5.6192 0.8418 42 1 12.3563 -5.6145 -0.9382 43 1 13.9476 -3.0157 -1.2951 44 1 15.5641 -3.7601 -1.3021 45 1 14.2265 -4.5287 -2.1903 46 1 14.2399 -4.5411 2.0881 47 1 15.5722 -3.7681 1.1964 48 1 13.9554 -3.0230 1.2034 49 1 17.8867 -4.9317 -0.0640 50 1 4.1117 -2.1443 -0.0001 51 1 1.6521 -2.1332 0.0003 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458382856.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:33 Heat of formation + Delta-G solvation = -53.250488 kcal Electronic energy + Delta-G solvation = -28758.806110 eV Core-core repulsion = 24657.650215 eV Total energy + Delta-G solvation = -4101.155894 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.64999 -39.66964 -38.91466 -36.71673 -35.86057 -34.11960 -33.35896 -33.16462 -31.49400 -30.88816 -29.30060 -27.56649 -25.71427 -25.55429 -24.82156 -23.35604 -23.18448 -22.39466 -20.95843 -20.45444 -18.78849 -18.65751 -18.00558 -16.65877 -16.19543 -15.86828 -15.82375 -15.69871 -15.23186 -15.19550 -15.14317 -14.68050 -14.39810 -14.09486 -14.05886 -13.98588 -13.74079 -13.48595 -12.94625 -12.86405 -12.77151 -12.45595 -12.19214 -12.15213 -12.00467 -11.99616 -11.51312 -11.36621 -11.19181 -10.85899 -10.68559 -10.38899 -10.37650 -10.20710 -9.85671 -9.62386 -9.57141 -9.49655 -9.31092 -9.17353 -9.08677 -8.78515 -8.41329 -8.22133 -6.01386 -4.11344 0.36098 0.87589 2.44123 2.46949 3.26596 3.29004 3.36061 3.39525 3.40577 3.58298 4.15932 4.23732 4.35528 4.39468 4.45129 4.51881 4.73118 4.75850 4.80667 4.84701 5.04998 5.12698 5.15413 5.22405 5.25502 5.47212 5.52196 5.61949 5.62282 5.77810 5.86776 5.94750 6.02397 6.20154 6.36430 6.38591 6.49074 6.52847 6.79265 6.83902 6.90042 7.03841 7.03979 7.07999 7.26311 7.39946 7.56866 7.70649 7.79190 8.02080 8.13141 8.37907 8.44149 8.88192 8.98857 9.54431 11.00074 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.036023 B = 0.001361 C = 0.001324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.088293 B =20573.203439 C =21143.318760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.060 4.060 3 C -0.130 4.130 4 C -0.054 4.054 5 C -0.141 4.141 6 C 0.561 3.439 7 O -0.535 6.535 8 N -0.722 5.722 9 C 0.108 3.892 10 C 0.131 3.869 11 N -0.752 5.752 12 C 0.700 3.300 13 O -0.599 6.599 14 N -0.731 5.731 15 C 0.151 3.849 16 C 0.054 3.946 17 C -0.129 4.129 18 C -0.129 4.129 19 C -0.505 4.505 20 H 0.058 0.942 21 C 0.066 3.934 22 N -0.886 5.886 23 Si 0.893 3.107 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.274 1.274 27 C -0.081 4.081 28 C -0.129 4.129 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.130 0.870 33 H 0.137 0.863 34 H 0.403 0.597 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.397 0.603 40 H 0.394 0.606 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.006 0.994 44 H 0.085 0.915 45 H 0.026 0.974 46 H 0.026 0.974 47 H 0.085 0.915 48 H 0.006 0.994 49 H 0.260 0.740 50 H 0.128 0.872 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.508 12.515 0.108 32.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.061 4.061 3 C -0.148 4.148 4 C -0.073 4.073 5 C -0.144 4.144 6 C 0.348 3.652 7 O -0.412 6.412 8 N -0.375 5.375 9 C -0.016 4.016 10 C 0.006 3.994 11 N -0.410 5.410 12 C 0.400 3.600 13 O -0.478 6.478 14 N -0.385 5.385 15 C 0.028 3.972 16 C 0.054 3.946 17 C -0.187 4.187 18 C -0.187 4.187 19 C -0.544 4.544 20 H 0.076 0.924 21 C -0.135 4.135 22 N -0.525 5.525 23 Si 0.721 3.279 24 H -0.207 1.207 25 H -0.213 1.213 26 H -0.199 1.199 27 C -0.099 4.099 28 C -0.147 4.147 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.147 0.853 33 H 0.155 0.845 34 H 0.239 0.761 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.230 0.770 40 H 0.229 0.771 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.025 0.975 44 H 0.103 0.897 45 H 0.045 0.955 46 H 0.045 0.955 47 H 0.103 0.897 48 H 0.025 0.975 49 H 0.070 0.930 50 H 0.146 0.854 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -29.380 12.312 0.112 31.856 hybrid contribution 0.812 -0.531 -0.021 0.970 sum -28.568 11.782 0.092 30.902 Atomic orbital electron populations 1.20885 0.90768 1.03246 1.02787 1.20197 0.96486 0.93169 0.96219 1.21070 0.93841 0.97961 1.01949 1.21287 0.93874 0.97779 0.94390 1.19887 0.92517 0.94634 1.07412 1.18259 0.87202 0.83554 0.76145 1.90792 1.69868 1.31077 1.49491 1.45679 1.07109 1.08884 1.75852 1.21482 0.79626 0.96923 1.03547 1.21113 0.80430 0.94919 1.02970 1.44856 1.05964 1.07923 1.82243 1.15994 0.82482 0.83491 0.78077 1.90887 1.68178 1.30225 1.58518 1.45506 1.03596 1.11501 1.77944 1.21600 0.93003 0.82264 1.00364 1.18384 0.87657 0.95713 0.92880 1.21812 1.03620 0.95696 0.97563 1.21813 1.03625 0.95703 0.97546 1.20980 0.91070 0.91521 1.50818 0.92409 1.24874 0.97553 0.96250 0.94799 1.69800 1.07445 1.24614 1.50610 0.86576 0.79219 0.84000 0.78101 1.20723 1.21284 1.19898 1.21326 0.94619 0.96991 0.97006 1.21017 0.93851 0.97982 1.01837 0.90641 0.91134 0.91160 0.85253 0.84535 0.76143 0.90437 0.90430 0.91130 0.91133 0.76972 0.77080 0.92912 0.92917 0.97547 0.89665 0.95462 0.95459 0.89664 0.97543 0.93018 0.85432 0.85253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.40 10.00 36.00 0.36 -0.04 16 2 C -0.06 -0.34 5.89 -104.53 -0.62 -0.96 16 3 C -0.13 -0.81 9.68 -39.64 -0.38 -1.20 16 4 C -0.05 -0.44 9.60 -39.19 -0.38 -0.81 16 5 C -0.14 -1.19 5.87 -104.97 -0.62 -1.81 16 6 C 0.56 5.75 7.77 -12.33 -0.10 5.65 16 7 O -0.53 -7.37 16.35 5.32 0.09 -7.29 16 8 N -0.72 -5.79 5.51 -61.25 -0.34 -6.12 16 9 C 0.11 0.93 5.79 -4.04 -0.02 0.91 16 10 C 0.13 1.32 5.79 -4.04 -0.02 1.29 16 11 N -0.75 -9.21 5.56 -65.23 -0.36 -9.57 16 12 C 0.70 12.09 8.57 -86.92 -0.74 11.34 16 13 O -0.60 -12.66 16.34 5.29 0.09 -12.58 16 14 N -0.73 -12.92 4.96 -65.22 -0.32 -13.25 16 15 C 0.15 3.20 4.50 -4.04 -0.02 3.19 16 16 C 0.05 1.26 0.50 -155.66 -0.08 1.18 16 17 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 18 C -0.13 -2.89 8.08 37.16 0.30 -2.59 16 19 C -0.51 -13.20 8.01 -34.44 -0.28 -13.48 16 20 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 21 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 22 N -0.89 -23.55 9.35 55.43 0.52 -23.03 16 23 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 27 C -0.08 -0.51 9.54 -39.18 -0.37 -0.88 16 28 C -0.13 -0.72 9.68 -39.64 -0.38 -1.11 16 29 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.07 0.18 8.08 -51.93 -0.42 -0.24 16 31 H 0.07 0.18 8.08 -51.93 -0.42 -0.23 16 32 H 0.13 0.55 8.06 -52.48 -0.42 0.12 16 33 H 0.14 1.12 7.65 -52.49 -0.40 0.71 16 34 H 0.40 2.25 6.51 -40.82 -0.27 1.98 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.40 3.86 8.49 -40.82 -0.35 3.51 16 40 H 0.39 6.23 6.18 -40.82 -0.25 5.98 16 41 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 44 H 0.08 2.12 6.07 -51.93 -0.32 1.80 16 45 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.08 2.12 6.07 -51.92 -0.32 1.80 16 48 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 49 H 0.26 6.67 8.31 -40.82 -0.34 6.34 16 50 H 0.13 0.51 6.41 -52.49 -0.34 0.18 16 51 H 0.13 0.47 8.06 -52.49 -0.42 0.04 16 LS Contribution 414.13 15.07 6.24 6.24 Total: -1.00 -32.75 414.13 -10.23 -42.98 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -7.98 Total: 7.19 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -3.14 Total: -0.25 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: -0.51 Total: -51.96 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: 0.17 Total: -19.86 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -32.75 -10.23 -42.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458382856.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.268 kcal (2) G-P(sol) polarization free energy of solvation -32.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds