Wall clock time and date at job start Wed Apr 1 2020 05:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38363 * 119.85393 * 2 1 4 4 C 1.37956 * 120.14702 * 179.97438 * 3 2 1 5 5 C 1.39576 * 119.84932 * 0.28830 * 4 3 2 6 6 C 1.47851 * 120.13897 * 179.71861 * 5 4 3 7 7 O 1.21548 * 120.00104 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99404 * 179.97438 * 6 5 4 9 9 C 1.46501 * 119.99572 * 180.02562 * 8 6 5 10 10 C 1.53003 * 109.47108 * 180.02562 * 9 8 6 11 11 N 1.46501 * 109.47105 * 179.97438 * 10 9 8 12 12 C 1.34775 * 119.99940 * 179.97438 * 11 10 9 13 13 O 1.21588 * 119.99632 * 0.02562 * 12 11 10 14 14 N 1.34774 * 119.99798 * 180.02562 * 12 11 10 15 15 C 1.46503 * 119.99532 * 180.02562 * 14 12 11 16 16 C 1.53007 * 109.46911 * 180.02562 * 15 14 12 17 17 C 1.52995 * 109.47021 * 300.00374 * 16 15 14 18 18 C 1.53002 * 109.46720 * 60.00136 * 16 15 14 19 19 C 1.50694 * 109.46916 * 179.97438 * 16 15 14 20 20 H 1.07997 * 120.00522 * 0.02562 * 19 16 15 21 21 C 1.37885 * 119.99629 * 179.97438 * 19 16 15 22 22 N 1.31508 * 120.00317 * 0.02562 * 21 19 16 23 23 Si 1.86803 * 119.99932 * 180.02562 * 21 19 16 24 24 H 1.48501 * 109.46920 * 89.99948 * 23 21 19 25 25 H 1.48493 * 109.47292 * 210.00416 * 23 21 19 26 26 H 1.48504 * 109.47006 * 330.00194 * 23 21 19 27 27 C 1.39570 * 119.71446 * 359.45852 * 5 4 3 28 28 C 1.37965 * 119.85310 * 0.51608 * 27 5 4 29 29 H 1.09004 * 109.47541 * 89.99459 * 1 2 3 30 30 H 1.08999 * 109.46991 * 209.99514 * 1 2 3 31 31 H 1.08999 * 109.47659 * 329.99637 * 1 2 3 32 32 H 1.08008 * 119.92400 * 359.96175 * 3 2 1 33 33 H 1.08002 * 120.07114 * 180.02562 * 4 3 2 34 34 H 0.96996 * 120.00513 * 0.02562 * 8 6 5 35 35 H 1.09004 * 109.46896 * 299.99924 * 9 8 6 36 36 H 1.08997 * 109.47343 * 59.99699 * 9 8 6 37 37 H 1.08996 * 109.46727 * 300.00236 * 10 9 8 38 38 H 1.09000 * 109.46589 * 59.99886 * 10 9 8 39 39 H 0.96996 * 119.99917 * 0.02562 * 11 10 9 40 40 H 0.96996 * 120.00060 * 0.02562 * 14 12 11 41 41 H 1.08997 * 109.47421 * 299.99678 * 15 14 12 42 42 H 1.09005 * 109.47175 * 60.00711 * 15 14 12 43 43 H 1.09001 * 109.47498 * 60.00330 * 17 16 15 44 44 H 1.09000 * 109.47241 * 179.97438 * 17 16 15 45 45 H 1.08997 * 109.47109 * 299.99509 * 17 16 15 46 46 H 1.09002 * 109.47125 * 60.00308 * 18 16 15 47 47 H 1.09007 * 109.46958 * 179.97438 * 18 16 15 48 48 H 1.08996 * 109.47368 * 299.99966 * 18 16 15 49 49 H 0.96995 * 120.00392 * 179.97438 * 22 21 19 50 50 H 1.07995 * 120.07846 * 180.23172 * 27 5 4 51 51 H 1.07994 * 119.93049 * 179.74166 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1957 1.2000 0.0000 4 6 3.5752 1.2071 0.0005 5 6 4.2761 0.0001 -0.0050 6 6 5.7546 0.0002 -0.0108 7 8 6.3623 1.0528 -0.0111 8 7 6.4285 -1.1671 -0.0156 9 6 7.8935 -1.1670 -0.0207 10 6 8.4035 -2.6095 -0.0262 11 7 9.8685 -2.6094 -0.0319 12 6 10.5424 -3.7766 -0.0369 13 8 9.9345 -4.8296 -0.0370 14 7 11.8902 -3.7765 -0.0416 15 6 12.6227 -5.0453 -0.0476 16 6 14.1270 -4.7656 -0.0515 17 6 14.4926 -3.9597 -1.2995 18 6 14.5004 -3.9669 1.1989 19 6 14.8804 -6.0707 -0.0570 20 1 14.3405 -7.0060 -0.0580 21 6 16.2592 -6.0706 -0.0617 22 7 16.9168 -4.9317 -0.0610 23 14 17.1933 -7.6883 -0.0692 24 1 17.4359 -8.1133 -1.4713 25 1 18.4932 -7.5126 0.6268 26 1 16.3931 -8.7252 0.6308 27 6 3.5753 -1.2069 0.0004 28 6 2.1957 -1.2000 0.0004 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5139 32 1 1.6520 2.1333 -0.0006 33 1 4.1116 2.1445 0.0010 34 1 5.9435 -2.0071 -0.0157 35 1 8.2537 -0.6513 -0.9109 36 1 8.2599 -0.6550 0.8690 37 1 8.0433 -3.1256 0.8637 38 1 8.0371 -3.1210 -0.9162 39 1 10.3535 -1.7694 -0.0314 40 1 12.3751 -2.9365 -0.0411 41 1 12.3626 -5.6192 0.8418 42 1 12.3563 -5.6145 -0.9382 43 1 13.9476 -3.0157 -1.2951 44 1 15.5641 -3.7601 -1.3021 45 1 14.2265 -4.5287 -2.1903 46 1 14.2399 -4.5411 2.0881 47 1 15.5722 -3.7681 1.1964 48 1 13.9554 -3.0230 1.2034 49 1 17.8867 -4.9317 -0.0640 50 1 4.1117 -2.1443 -0.0001 51 1 1.6521 -2.1332 0.0003 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458382856.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:32 Heat of formation + Delta-G solvation = -74.751436 kcal Electronic energy + Delta-G solvation = -28759.738461 eV Core-core repulsion = 24657.650215 eV Total energy + Delta-G solvation = -4102.088245 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.35255 -40.99242 -39.53074 -38.31255 -36.94741 -35.16027 -34.91362 -33.79832 -32.68502 -31.95163 -30.18296 -28.14190 -27.53914 -27.38350 -26.46689 -24.18847 -23.66535 -23.06678 -22.11082 -21.29497 -20.57015 -19.70407 -18.98676 -17.76807 -17.44027 -17.09714 -16.96591 -16.58338 -16.33433 -16.23359 -15.83261 -15.78109 -15.33722 -15.30659 -15.08550 -14.65269 -14.61672 -14.57753 -14.42027 -14.21671 -13.97330 -13.24188 -13.08053 -13.03200 -13.02383 -12.87084 -12.78317 -12.64270 -12.57621 -12.55108 -12.22708 -12.12186 -11.94632 -11.46064 -11.43415 -11.20018 -11.10127 -10.68486 -10.41325 -10.35462 -10.27348 -9.97324 -9.67834 -9.65475 -8.00542 -6.16058 -0.18274 0.40384 1.43836 1.46435 1.51867 1.56213 1.77753 2.19690 2.26757 2.48511 2.85037 3.23344 3.44274 3.57374 3.70402 3.84912 3.99107 4.02389 4.03747 4.37197 4.38112 4.43221 4.44551 4.56244 4.73417 4.75423 4.79720 4.82505 4.83854 4.86312 5.02362 5.07451 5.08621 5.12616 5.19755 5.22745 5.23429 5.31810 5.38059 5.40271 5.46045 5.59940 5.64210 5.69288 5.69500 5.94172 6.04457 6.17439 6.24229 6.38979 6.45642 6.88455 7.07039 7.14272 7.51690 7.62115 8.98401 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.036023 B = 0.001361 C = 0.001324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.088293 B =20573.203439 C =21143.318760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.061 4.061 3 C -0.136 4.136 4 C -0.072 4.072 5 C -0.163 4.163 6 C 0.559 3.441 7 O -0.579 6.579 8 N -0.711 5.711 9 C 0.119 3.881 10 C 0.136 3.864 11 N -0.733 5.733 12 C 0.700 3.300 13 O -0.639 6.639 14 N -0.726 5.726 15 C 0.169 3.831 16 C 0.049 3.951 17 C -0.118 4.118 18 C -0.118 4.118 19 C -0.528 4.528 20 H 0.045 0.955 21 C 0.029 3.971 22 N -0.900 5.900 23 Si 0.944 3.056 24 H -0.279 1.279 25 H -0.283 1.283 26 H -0.275 1.275 27 C -0.079 4.079 28 C -0.134 4.134 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.146 0.854 33 H 0.124 0.876 34 H 0.416 0.584 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.412 0.588 40 H 0.406 0.594 41 H 0.036 0.964 42 H 0.036 0.964 43 H 0.037 0.963 44 H 0.061 0.939 45 H 0.017 0.983 46 H 0.017 0.983 47 H 0.061 0.939 48 H 0.037 0.963 49 H 0.260 0.740 50 H 0.149 0.851 51 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.465 12.657 0.112 33.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.061 4.061 3 C -0.154 4.154 4 C -0.091 4.091 5 C -0.166 4.166 6 C 0.348 3.652 7 O -0.460 6.460 8 N -0.364 5.364 9 C -0.006 4.006 10 C 0.011 3.989 11 N -0.391 5.391 12 C 0.399 3.601 13 O -0.521 6.521 14 N -0.381 5.381 15 C 0.044 3.956 16 C 0.048 3.952 17 C -0.176 4.176 18 C -0.176 4.176 19 C -0.566 4.566 20 H 0.064 0.936 21 C -0.171 4.171 22 N -0.538 5.538 23 Si 0.771 3.229 24 H -0.205 1.205 25 H -0.209 1.209 26 H -0.200 1.200 27 C -0.098 4.098 28 C -0.151 4.151 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.164 0.836 33 H 0.142 0.858 34 H 0.254 0.746 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.248 0.752 40 H 0.242 0.758 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.080 0.920 45 H 0.037 0.963 46 H 0.037 0.963 47 H 0.080 0.920 48 H 0.055 0.945 49 H 0.069 0.931 50 H 0.167 0.833 51 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -31.357 12.484 0.116 33.751 hybrid contribution 1.314 -0.559 -0.023 1.429 sum -30.043 11.925 0.093 32.323 Atomic orbital electron populations 1.20946 0.88929 1.04181 1.03558 1.20561 0.97896 0.92893 0.94741 1.21292 0.93169 0.99255 1.01680 1.21348 0.94843 0.97426 0.95489 1.19862 0.91483 0.95735 1.09550 1.18593 0.88039 0.83269 0.75298 1.90761 1.70814 1.32595 1.51839 1.45565 1.06891 1.09053 1.74881 1.21320 0.79954 0.95747 1.03534 1.21166 0.78871 0.95760 1.03101 1.44673 1.06880 1.07064 1.80483 1.16080 0.82129 0.84129 0.77740 1.90865 1.68826 1.32128 1.60238 1.45204 1.03939 1.10681 1.78296 1.21114 0.92179 0.83473 0.98806 1.18396 0.88469 0.94804 0.93543 1.21644 1.02359 0.96876 0.96739 1.21646 1.02363 0.96883 0.96723 1.21272 0.91732 0.92453 1.51165 0.93647 1.25437 0.98224 0.98706 0.94712 1.69905 1.07478 1.25698 1.50747 0.85776 0.78115 0.81041 0.77974 1.20526 1.20909 1.20024 1.21571 0.95190 0.96944 0.96079 1.21370 0.93694 0.99042 1.01039 0.89804 0.90068 0.90436 0.83611 0.85771 0.74609 0.90498 0.90488 0.91010 0.91015 0.75158 0.75757 0.94545 0.94522 0.94458 0.92042 0.96341 0.96335 0.92043 0.94455 0.93075 0.83333 0.82895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.48 10.00 71.23 0.71 0.23 16 2 C -0.06 -0.56 5.89 -19.81 -0.12 -0.68 16 3 C -0.14 -1.58 9.68 22.23 0.22 -1.37 16 4 C -0.07 -1.18 9.60 22.53 0.22 -0.96 16 5 C -0.16 -2.70 5.87 -20.09 -0.12 -2.82 16 6 C 0.56 11.39 7.77 86.79 0.67 12.07 16 7 O -0.58 -16.38 16.35 -3.87 -0.06 -16.44 16 8 N -0.71 -10.55 5.51 -465.96 -2.57 -13.12 16 9 C 0.12 1.87 5.79 86.38 0.50 2.37 16 10 C 0.14 2.48 5.79 86.38 0.50 2.98 16 11 N -0.73 -16.44 5.56 -478.54 -2.66 -19.11 16 12 C 0.70 23.15 8.57 179.06 1.53 24.69 16 13 O -0.64 -26.53 16.34 -3.99 -0.07 -26.59 16 14 N -0.73 -24.58 4.96 -478.52 -2.37 -26.95 16 15 C 0.17 7.14 4.50 86.38 0.39 7.53 16 16 C 0.05 2.23 0.50 -52.93 -0.03 2.21 16 17 C -0.12 -5.21 8.08 71.98 0.58 -4.63 16 18 C -0.12 -5.21 8.08 71.98 0.58 -4.63 16 19 C -0.53 -27.80 8.01 25.60 0.21 -27.60 16 20 H 0.05 2.44 7.74 -2.91 -0.02 2.42 16 21 C 0.03 1.52 5.15 84.66 0.44 1.95 16 22 N -0.90 -47.86 9.35 21.45 0.20 -47.66 16 23 Si 0.94 42.50 29.54 68.60 2.03 44.53 16 24 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 25 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 26 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 27 C -0.08 -0.87 9.54 22.53 0.21 -0.65 16 28 C -0.13 -1.19 9.68 22.23 0.22 -0.98 16 29 H 0.08 0.24 8.14 -2.38 -0.02 0.22 16 30 H 0.08 0.18 8.08 -2.39 -0.02 0.16 16 31 H 0.08 0.22 8.08 -2.39 -0.02 0.20 16 32 H 0.15 1.08 8.06 -2.91 -0.02 1.05 16 33 H 0.12 2.23 7.65 -2.91 -0.02 2.20 16 34 H 0.42 3.89 6.51 -92.71 -0.60 3.29 16 35 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.41 6.95 8.49 -92.71 -0.79 6.16 16 40 H 0.41 11.80 6.18 -92.71 -0.57 11.23 16 41 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.04 1.65 8.14 -2.38 -0.02 1.64 16 43 H 0.04 1.36 6.86 -2.39 -0.02 1.35 16 44 H 0.06 3.02 6.07 -2.39 -0.01 3.01 16 45 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.06 3.02 6.07 -2.38 -0.01 3.01 16 48 H 0.04 1.36 6.86 -2.39 -0.02 1.35 16 49 H 0.26 13.33 8.31 -92.71 -0.77 12.56 16 50 H 0.15 0.84 6.41 -2.91 -0.02 0.82 16 51 H 0.15 0.60 8.06 -2.91 -0.02 0.58 16 Total: -1.00 -71.43 414.13 0.21 -71.21 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: -1.00 Total: 24.43 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: 6.71 Total: 9.70 kcal Atomic # 7 Polarization: -99.43 SS G_CDS: -7.40 Total: -106.83 kcal Atomic # 8 Polarization: -42.91 SS G_CDS: -0.13 Total: -43.04 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -71.43 0.21 -71.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458382856.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.539 kcal (2) G-P(sol) polarization free energy of solvation -71.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds