Wall clock time and date at job start Wed Apr 1 2020 04:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38258 * 120.00076 * 2 1 4 4 C 1.38207 * 120.00230 * 179.97438 * 3 2 1 5 5 C 1.38254 * 119.99953 * 0.02562 * 4 3 2 6 6 C 1.38209 * 119.99980 * 359.74295 * 5 4 3 7 7 C 1.38209 * 120.00061 * 179.97438 * 2 1 3 8 8 C 1.50701 * 119.99719 * 359.97438 * 7 2 1 9 9 H 1.08996 * 109.47236 * 315.46833 * 8 7 2 10 10 C 1.53004 * 109.47049 * 195.46572 * 8 7 2 11 11 C 1.50699 * 109.47344 * 175.00095 * 10 8 7 12 12 O 1.21286 * 119.99717 * 0.02562 * 11 10 8 13 13 N 1.34774 * 120.00127 * 180.02562 * 11 10 8 14 14 C 1.46493 * 119.99937 * 180.02562 * 13 11 10 15 15 C 1.50704 * 109.47568 * 89.99828 * 14 13 11 16 16 H 1.08007 * 119.99539 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00594 * 180.02562 * 15 14 13 18 18 N 1.31510 * 120.00184 * 180.02562 * 17 15 14 19 19 Si 1.86794 * 119.99587 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.47093 * 90.00342 * 19 17 15 21 21 H 1.48498 * 109.47081 * 210.00037 * 19 17 15 22 22 H 1.48505 * 109.47753 * 330.00220 * 19 17 15 23 23 C 1.46501 * 119.99943 * 0.02562 * 13 11 10 24 24 C 1.52995 * 109.46911 * 120.00291 * 23 13 11 25 25 C 1.52999 * 109.46770 * 240.00172 * 23 13 11 26 26 N 1.46502 * 109.47131 * 75.47126 * 8 7 2 27 27 C 1.34782 * 119.99910 * 63.08458 * 26 8 7 28 28 N 1.34774 * 119.99761 * 174.72266 * 27 26 8 29 29 O 1.21587 * 120.00100 * 354.99089 * 27 26 8 30 30 H 1.09004 * 109.46779 * 270.01964 * 1 2 3 31 31 H 1.08998 * 109.47159 * 30.01577 * 1 2 3 32 32 H 1.09000 * 109.47355 * 150.01982 * 1 2 3 33 33 H 1.07998 * 119.99961 * 0.02562 * 3 2 1 34 34 H 1.08002 * 120.00330 * 180.02562 * 4 3 2 35 35 H 1.08006 * 120.00535 * 180.02562 * 5 4 3 36 36 H 1.08001 * 120.00697 * 180.27178 * 6 5 4 37 37 H 1.09000 * 109.47214 * 295.00408 * 10 8 7 38 38 H 1.09003 * 109.46491 * 55.00477 * 10 8 7 39 39 H 1.09001 * 109.47496 * 210.00235 * 14 13 11 40 40 H 1.09003 * 109.47443 * 330.00288 * 14 13 11 41 41 H 0.96996 * 119.99919 * 180.02562 * 18 17 15 42 42 H 1.08997 * 109.47160 * 359.97438 * 23 13 11 43 43 H 1.08997 * 109.47388 * 59.99974 * 24 23 13 44 44 H 1.09000 * 109.46905 * 180.02562 * 24 23 13 45 45 H 1.09005 * 109.46968 * 299.99469 * 24 23 13 46 46 H 1.09001 * 109.47600 * 60.00263 * 25 23 13 47 47 H 1.09001 * 109.46926 * 180.02562 * 25 23 13 48 48 H 1.09006 * 109.47314 * 299.99626 * 25 23 13 49 49 H 0.96995 * 120.00166 * 243.08960 * 26 8 7 50 50 H 0.96997 * 120.00140 * 180.27372 * 28 27 26 51 51 H 0.96998 * 120.00399 * 0.27106 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0001 0.0005 6 6 3.5807 -1.1969 0.0054 7 6 2.1981 -1.1969 0.0005 8 6 1.4445 -2.5020 0.0017 9 1 0.6287 -2.4499 0.7227 10 6 2.3937 -3.6386 0.3868 11 6 1.6157 -4.9236 0.5078 12 8 0.4199 -4.9298 0.3054 13 7 2.2488 -6.0658 0.8408 14 6 1.4925 -7.3150 0.9578 15 6 1.4677 -8.0143 -0.3769 16 1 1.9659 -7.5725 -1.2273 17 6 0.8091 -9.2180 -0.5126 18 7 0.7880 -9.8284 -1.6772 19 14 -0.0518 -9.9824 0.9584 20 1 -1.4565 -9.5036 1.0136 21 1 -0.0379 -11.4614 0.8265 22 1 0.6543 -9.5898 2.2045 23 6 3.6931 -6.0582 1.0857 24 6 3.9703 -6.5255 2.5160 25 6 4.3828 -7.0017 0.0983 26 7 0.8998 -2.7525 -1.3350 27 6 1.7324 -2.9184 -2.3818 28 7 1.2376 -3.2539 -3.5897 29 8 2.9302 -2.7700 -2.2353 30 1 -0.3633 0.0004 1.0277 31 1 -0.3633 0.8898 -0.5141 32 1 -0.3634 -0.8901 -0.5135 33 1 1.6584 2.1326 0.0004 34 1 4.1204 2.1327 0.0010 35 1 5.3518 0.0000 0.0014 36 1 4.1206 -2.1322 0.0098 37 1 3.1594 -3.7484 -0.3811 38 1 2.8668 -3.4090 1.3416 39 1 1.9680 -7.9597 1.6970 40 1 0.4722 -7.0941 1.2712 41 1 0.3243 -10.6750 -1.7727 42 1 4.0790 -5.0476 0.9520 43 1 3.5845 -7.5361 2.6492 44 1 5.0449 -6.5193 2.6984 45 1 3.4789 -5.8532 3.2195 46 1 4.1854 -6.6688 -0.9207 47 1 5.4574 -6.9963 0.2808 48 1 3.9970 -8.0124 0.2316 49 1 -0.0601 -2.7990 -1.4666 50 1 1.8371 -3.3771 -4.3422 51 1 0.2820 -3.3722 -3.7067 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000523281049.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:41 Heat of formation + Delta-G solvation = -40.032481 kcal Electronic energy + Delta-G solvation = -32616.051800 eV Core-core repulsion = 28515.469081 eV Total energy + Delta-G solvation = -4100.582719 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.60478 -39.00081 -38.79173 -36.12336 -34.96778 -33.53941 -32.80729 -32.63971 -31.17829 -30.92801 -29.66898 -27.70246 -26.79596 -26.68643 -24.67657 -22.46746 -21.71983 -21.50112 -20.97725 -19.84825 -18.41219 -17.83939 -17.24706 -16.84147 -16.82409 -15.97201 -15.49490 -15.29885 -15.01564 -14.66571 -14.57849 -14.28997 -14.03879 -13.74430 -13.55475 -13.49884 -13.42689 -12.99383 -12.66768 -12.65302 -12.46313 -12.28148 -12.06700 -11.93080 -11.78948 -11.67950 -11.52616 -11.32235 -11.03478 -10.86687 -10.83972 -10.74506 -10.49075 -10.26631 -10.08153 -9.89087 -9.43399 -9.38001 -8.94280 -8.77221 -8.65284 -8.55822 -8.53293 -7.63949 -6.05813 -4.02497 1.35988 1.49809 3.17638 3.28873 3.35012 3.36915 3.43019 3.54510 3.84906 3.89863 4.41109 4.67427 4.78589 4.81122 4.95058 5.01411 5.15979 5.22113 5.27445 5.27712 5.30990 5.48510 5.54076 5.54699 5.63103 5.69207 5.70972 5.72857 5.82262 6.01509 6.08008 6.12961 6.16213 6.19101 6.31388 6.36089 6.52302 6.59448 6.60315 6.70293 6.74090 6.82701 6.97661 6.99997 7.05237 7.08176 7.17276 7.43915 7.65724 8.22453 8.35424 8.51986 8.91542 8.98527 9.06444 9.55406 11.07473 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014171 B = 0.003477 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.337623 B = 8052.072474 C = 8570.693665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.073 4.073 3 C -0.132 4.132 4 C -0.117 4.117 5 C -0.133 4.133 6 C -0.070 4.070 7 C -0.092 4.092 8 C 0.230 3.770 9 H 0.102 0.898 10 C -0.167 4.167 11 C 0.513 3.487 12 O -0.545 6.545 13 N -0.587 5.587 14 C 0.216 3.784 15 C -0.517 4.517 16 H 0.075 0.925 17 C 0.071 3.929 18 N -0.899 5.899 19 Si 0.873 3.127 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.267 1.267 23 C 0.133 3.867 24 C -0.162 4.162 25 C -0.155 4.155 26 N -0.723 5.723 27 C 0.711 3.289 28 N -0.868 5.868 29 O -0.593 6.593 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.127 0.873 37 H 0.118 0.882 38 H 0.092 0.908 39 H 0.029 0.971 40 H 0.033 0.967 41 H 0.263 0.737 42 H 0.078 0.922 43 H 0.064 0.936 44 H 0.061 0.939 45 H 0.052 0.948 46 H 0.056 0.944 47 H 0.048 0.952 48 H 0.079 0.921 49 H 0.399 0.601 50 H 0.411 0.589 51 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.726 19.494 4.005 20.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.073 4.073 3 C -0.150 4.150 4 C -0.136 4.136 5 C -0.151 4.151 6 C -0.088 4.088 7 C -0.094 4.094 8 C 0.124 3.876 9 H 0.120 0.880 10 C -0.208 4.208 11 C 0.300 3.700 12 O -0.423 6.423 13 N -0.319 5.319 14 C 0.095 3.905 15 C -0.555 4.555 16 H 0.093 0.907 17 C -0.131 4.131 18 N -0.538 5.538 19 Si 0.700 3.300 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.192 1.192 23 C 0.029 3.971 24 C -0.220 4.220 25 C -0.213 4.213 26 N -0.377 5.377 27 C 0.409 3.591 28 N -0.435 5.435 29 O -0.471 6.471 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.136 0.864 36 H 0.145 0.855 37 H 0.136 0.864 38 H 0.110 0.890 39 H 0.047 0.953 40 H 0.051 0.949 41 H 0.073 0.927 42 H 0.096 0.904 43 H 0.083 0.917 44 H 0.080 0.920 45 H 0.071 0.929 46 H 0.075 0.925 47 H 0.067 0.933 48 H 0.098 0.902 49 H 0.234 0.766 50 H 0.243 0.757 51 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 3.997 19.426 4.121 20.256 hybrid contribution -1.013 -0.788 0.060 1.284 sum 2.984 18.638 4.181 19.333 Atomic orbital electron populations 1.20851 0.91531 1.02776 1.02287 1.19706 0.95797 0.92565 0.99260 1.20897 0.94251 0.97091 1.02749 1.21070 0.94288 0.97853 1.00361 1.21108 0.99710 0.92592 1.01721 1.21128 0.93569 0.98242 0.95873 1.19934 0.94052 0.93992 1.01380 1.19210 0.95387 0.89438 0.83521 0.88041 1.22346 1.00863 0.93439 1.04148 1.20248 0.87873 0.84821 0.77032 1.90606 1.15117 1.86253 1.50348 1.47971 1.07479 1.09133 1.67298 1.19583 0.91840 0.81174 0.97871 1.21341 1.34075 1.04793 0.95324 0.90664 1.24848 0.95802 0.96878 0.95574 1.69896 1.43574 1.17065 1.23283 0.86907 0.80884 0.78510 0.83692 1.20101 1.21237 1.19163 1.21025 0.81508 0.99746 0.94845 1.22171 1.01134 1.02482 0.96241 1.22115 0.98163 1.01872 0.99168 1.44884 1.09144 1.77090 1.06582 1.15955 0.85334 0.77214 0.80593 1.42974 1.11968 1.77590 1.10956 1.90876 1.13532 1.58880 1.83834 0.91142 0.91822 0.91268 0.86585 0.86630 0.86434 0.85507 0.86396 0.88963 0.95327 0.94907 0.92740 0.90415 0.91684 0.92030 0.92900 0.92474 0.93294 0.90231 0.76648 0.75726 0.77713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 9.32 36.01 0.34 -0.78 16 2 C -0.07 -0.85 5.88 -104.62 -0.62 -1.47 16 3 C -0.13 -1.43 9.70 -39.59 -0.38 -1.82 16 4 C -0.12 -1.27 10.05 -39.59 -0.40 -1.67 16 5 C -0.13 -1.57 10.05 -39.59 -0.40 -1.97 16 6 C -0.07 -0.92 7.59 -39.58 -0.30 -1.22 16 7 C -0.09 -1.21 4.58 -104.62 -0.48 -1.69 16 8 C 0.23 3.21 1.54 -69.08 -0.11 3.10 16 9 H 0.10 1.36 7.35 -51.93 -0.38 0.98 16 10 C -0.17 -2.59 2.06 -27.88 -0.06 -2.65 16 11 C 0.51 10.17 7.53 -10.99 -0.08 10.09 16 12 O -0.54 -12.30 14.93 5.55 0.08 -12.22 16 13 N -0.59 -11.97 2.39 -167.47 -0.40 -12.37 16 14 C 0.22 5.20 3.66 -5.20 -0.02 5.18 16 15 C -0.52 -14.48 8.38 -34.44 -0.29 -14.77 16 16 H 0.08 2.34 7.87 -52.48 -0.41 1.93 16 17 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 18 N -0.90 -27.42 13.96 55.43 0.77 -26.64 16 19 Si 0.87 21.46 27.47 -169.99 -4.67 16.79 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 23 C 0.13 2.21 3.17 -67.93 -0.22 1.99 16 24 C -0.16 -2.31 9.17 37.15 0.34 -1.96 16 25 C -0.16 -2.75 8.47 37.16 0.31 -2.43 16 26 N -0.72 -10.10 3.63 -59.81 -0.22 -10.32 16 27 C 0.71 11.05 8.22 -86.92 -0.71 10.34 16 28 N -0.87 -10.77 8.88 27.63 0.25 -10.52 16 29 O -0.59 -10.74 13.17 5.29 0.07 -10.67 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 32 H 0.07 0.67 5.83 -51.93 -0.30 0.36 16 33 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 35 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 36 H 0.13 1.72 5.96 -52.49 -0.31 1.40 16 37 H 0.12 2.00 4.69 -51.93 -0.24 1.75 16 38 H 0.09 1.21 7.57 -51.93 -0.39 0.82 16 39 H 0.03 0.67 5.48 -51.93 -0.28 0.38 16 40 H 0.03 0.85 6.85 -51.93 -0.36 0.49 16 41 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 42 H 0.08 1.12 5.77 -51.93 -0.30 0.82 16 43 H 0.06 1.02 6.66 -51.93 -0.35 0.68 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 47 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.08 1.62 6.92 -51.93 -0.36 1.26 16 49 H 0.40 4.95 8.35 -40.82 -0.34 4.61 16 50 H 0.41 4.70 8.93 -40.82 -0.36 4.33 16 51 H 0.40 3.98 8.85 -40.82 -0.36 3.61 16 LS Contribution 398.41 15.07 6.00 6.00 Total: -1.00 -35.18 398.41 -9.00 -44.19 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: -7.73 Total: 15.56 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -3.17 Total: 0.20 kcal Atomic # 7 Polarization: -60.25 SS G_CDS: 0.40 Total: -59.85 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: 0.15 Total: -22.89 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.18 -9.00 -44.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523281049.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.154 kcal (2) G-P(sol) polarization free energy of solvation -35.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds