Wall clock time and date at job start Wed Apr 1 2020 04:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38258 * 120.00076 * 2 1 4 4 C 1.38207 * 120.00230 * 179.97438 * 3 2 1 5 5 C 1.38254 * 119.99953 * 0.02562 * 4 3 2 6 6 C 1.38209 * 119.99980 * 359.74295 * 5 4 3 7 7 C 1.38209 * 120.00061 * 179.97438 * 2 1 3 8 8 C 1.50701 * 119.99719 * 359.97438 * 7 2 1 9 9 H 1.08996 * 109.47236 * 315.46833 * 8 7 2 10 10 C 1.53004 * 109.47049 * 195.46572 * 8 7 2 11 11 C 1.50699 * 109.47344 * 175.00095 * 10 8 7 12 12 O 1.21286 * 119.99717 * 0.02562 * 11 10 8 13 13 N 1.34774 * 120.00127 * 180.02562 * 11 10 8 14 14 C 1.46493 * 119.99937 * 180.02562 * 13 11 10 15 15 C 1.50704 * 109.47568 * 89.99828 * 14 13 11 16 16 H 1.08007 * 119.99539 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00594 * 180.02562 * 15 14 13 18 18 N 1.31510 * 120.00184 * 180.02562 * 17 15 14 19 19 Si 1.86794 * 119.99587 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.47093 * 90.00342 * 19 17 15 21 21 H 1.48498 * 109.47081 * 210.00037 * 19 17 15 22 22 H 1.48505 * 109.47753 * 330.00220 * 19 17 15 23 23 C 1.46501 * 119.99943 * 0.02562 * 13 11 10 24 24 C 1.52995 * 109.46911 * 120.00291 * 23 13 11 25 25 C 1.52999 * 109.46770 * 240.00172 * 23 13 11 26 26 N 1.46502 * 109.47131 * 75.47126 * 8 7 2 27 27 C 1.34782 * 119.99910 * 63.08458 * 26 8 7 28 28 N 1.34774 * 119.99761 * 174.72266 * 27 26 8 29 29 O 1.21587 * 120.00100 * 354.99089 * 27 26 8 30 30 H 1.09004 * 109.46779 * 270.01964 * 1 2 3 31 31 H 1.08998 * 109.47159 * 30.01577 * 1 2 3 32 32 H 1.09000 * 109.47355 * 150.01982 * 1 2 3 33 33 H 1.07998 * 119.99961 * 0.02562 * 3 2 1 34 34 H 1.08002 * 120.00330 * 180.02562 * 4 3 2 35 35 H 1.08006 * 120.00535 * 180.02562 * 5 4 3 36 36 H 1.08001 * 120.00697 * 180.27178 * 6 5 4 37 37 H 1.09000 * 109.47214 * 295.00408 * 10 8 7 38 38 H 1.09003 * 109.46491 * 55.00477 * 10 8 7 39 39 H 1.09001 * 109.47496 * 210.00235 * 14 13 11 40 40 H 1.09003 * 109.47443 * 330.00288 * 14 13 11 41 41 H 0.96996 * 119.99919 * 180.02562 * 18 17 15 42 42 H 1.08997 * 109.47160 * 359.97438 * 23 13 11 43 43 H 1.08997 * 109.47388 * 59.99974 * 24 23 13 44 44 H 1.09000 * 109.46905 * 180.02562 * 24 23 13 45 45 H 1.09005 * 109.46968 * 299.99469 * 24 23 13 46 46 H 1.09001 * 109.47600 * 60.00263 * 25 23 13 47 47 H 1.09001 * 109.46926 * 180.02562 * 25 23 13 48 48 H 1.09006 * 109.47314 * 299.99626 * 25 23 13 49 49 H 0.96995 * 120.00166 * 243.08960 * 26 8 7 50 50 H 0.96997 * 120.00140 * 180.27372 * 28 27 26 51 51 H 0.96998 * 120.00399 * 0.27106 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0001 0.0005 6 6 3.5807 -1.1969 0.0054 7 6 2.1981 -1.1969 0.0005 8 6 1.4445 -2.5020 0.0017 9 1 0.6287 -2.4499 0.7227 10 6 2.3937 -3.6386 0.3868 11 6 1.6157 -4.9236 0.5078 12 8 0.4199 -4.9298 0.3054 13 7 2.2488 -6.0658 0.8408 14 6 1.4925 -7.3150 0.9578 15 6 1.4677 -8.0143 -0.3769 16 1 1.9659 -7.5725 -1.2273 17 6 0.8091 -9.2180 -0.5126 18 7 0.7880 -9.8284 -1.6772 19 14 -0.0518 -9.9824 0.9584 20 1 -1.4565 -9.5036 1.0136 21 1 -0.0379 -11.4614 0.8265 22 1 0.6543 -9.5898 2.2045 23 6 3.6931 -6.0582 1.0857 24 6 3.9703 -6.5255 2.5160 25 6 4.3828 -7.0017 0.0983 26 7 0.8998 -2.7525 -1.3350 27 6 1.7324 -2.9184 -2.3818 28 7 1.2376 -3.2539 -3.5897 29 8 2.9302 -2.7700 -2.2353 30 1 -0.3633 0.0004 1.0277 31 1 -0.3633 0.8898 -0.5141 32 1 -0.3634 -0.8901 -0.5135 33 1 1.6584 2.1326 0.0004 34 1 4.1204 2.1327 0.0010 35 1 5.3518 0.0000 0.0014 36 1 4.1206 -2.1322 0.0098 37 1 3.1594 -3.7484 -0.3811 38 1 2.8668 -3.4090 1.3416 39 1 1.9680 -7.9597 1.6970 40 1 0.4722 -7.0941 1.2712 41 1 0.3243 -10.6750 -1.7727 42 1 4.0790 -5.0476 0.9520 43 1 3.5845 -7.5361 2.6492 44 1 5.0449 -6.5193 2.6984 45 1 3.4789 -5.8532 3.2195 46 1 4.1854 -6.6688 -0.9207 47 1 5.4574 -6.9963 0.2808 48 1 3.9970 -8.0124 0.2316 49 1 -0.0601 -2.7990 -1.4666 50 1 1.8371 -3.3771 -4.3422 51 1 0.2820 -3.3722 -3.7067 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000523281049.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:40 Heat of formation + Delta-G solvation = -64.594623 kcal Electronic energy + Delta-G solvation = -32617.116895 eV Core-core repulsion = 28515.469081 eV Total energy + Delta-G solvation = -4101.647813 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.77586 -40.44524 -39.82786 -37.63260 -36.15373 -34.88678 -34.67774 -33.56999 -32.56432 -32.24010 -31.02270 -29.31558 -28.01866 -27.66430 -25.90300 -24.22063 -22.93661 -22.67400 -22.09165 -20.96852 -19.63620 -19.24753 -19.04292 -18.42514 -18.10206 -17.01697 -16.91439 -16.65901 -16.20624 -15.93358 -15.86414 -15.57893 -15.26665 -15.11819 -14.95481 -14.79461 -14.55445 -14.33420 -13.99049 -13.88595 -13.78992 -13.53668 -13.44623 -13.08221 -13.01124 -12.91314 -12.76971 -12.74906 -12.57614 -12.35884 -12.28005 -11.93223 -11.91717 -11.76861 -11.64070 -11.51960 -11.14150 -10.78305 -10.57360 -10.48726 -9.92017 -9.55709 -9.40845 -9.34619 -8.29098 -6.31101 0.47677 0.62291 1.32550 1.35216 1.43816 1.86354 2.08548 2.31930 2.33177 2.36229 2.99348 3.04723 3.55624 3.66592 3.81602 3.95357 4.03326 4.10846 4.18909 4.25247 4.31372 4.38701 4.41667 4.51859 4.54558 4.72741 4.76350 4.84261 4.84731 4.85721 4.89434 4.97108 4.98344 5.02073 5.04156 5.07283 5.23991 5.38156 5.39126 5.48252 5.54713 5.60291 5.67080 5.72917 5.73877 5.81477 5.97052 6.09997 6.23255 6.30782 6.69090 6.78660 7.14116 7.27083 7.48425 7.75798 8.87680 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014171 B = 0.003477 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.337623 B = 8052.072474 C = 8570.693665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.080 4.080 3 C -0.136 4.136 4 C -0.118 4.118 5 C -0.144 4.144 6 C -0.087 4.087 7 C -0.105 4.105 8 C 0.232 3.768 9 H 0.106 0.894 10 C -0.151 4.151 11 C 0.504 3.496 12 O -0.578 6.578 13 N -0.595 5.595 14 C 0.228 3.772 15 C -0.514 4.514 16 H 0.027 0.973 17 C 0.011 3.989 18 N -0.947 5.947 19 Si 0.941 3.059 20 H -0.275 1.275 21 H -0.279 1.279 22 H -0.241 1.241 23 C 0.127 3.873 24 C -0.155 4.155 25 C -0.148 4.148 26 N -0.718 5.718 27 C 0.699 3.301 28 N -0.859 5.859 29 O -0.621 6.621 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.132 0.868 36 H 0.117 0.883 37 H 0.106 0.894 38 H 0.120 0.880 39 H 0.044 0.956 40 H 0.018 0.982 41 H 0.265 0.735 42 H 0.104 0.896 43 H 0.047 0.953 44 H 0.094 0.906 45 H 0.065 0.935 46 H 0.023 0.977 47 H 0.087 0.913 48 H 0.046 0.954 49 H 0.405 0.595 50 H 0.416 0.584 51 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.140 21.410 6.326 22.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.081 4.081 3 C -0.154 4.154 4 C -0.136 4.136 5 C -0.162 4.162 6 C -0.106 4.106 7 C -0.106 4.106 8 C 0.126 3.874 9 H 0.124 0.876 10 C -0.192 4.192 11 C 0.293 3.707 12 O -0.459 6.459 13 N -0.326 5.326 14 C 0.105 3.895 15 C -0.553 4.553 16 H 0.045 0.955 17 C -0.187 4.187 18 N -0.588 5.588 19 Si 0.765 3.235 20 H -0.201 1.201 21 H -0.205 1.205 22 H -0.165 1.165 23 C 0.024 3.976 24 C -0.213 4.213 25 C -0.206 4.206 26 N -0.373 5.373 27 C 0.397 3.603 28 N -0.427 5.427 29 O -0.502 6.502 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.158 0.842 34 H 0.159 0.841 35 H 0.150 0.850 36 H 0.135 0.865 37 H 0.124 0.876 38 H 0.138 0.862 39 H 0.062 0.938 40 H 0.036 0.964 41 H 0.074 0.926 42 H 0.122 0.878 43 H 0.066 0.934 44 H 0.113 0.887 45 H 0.084 0.916 46 H 0.043 0.957 47 H 0.105 0.895 48 H 0.065 0.935 49 H 0.241 0.759 50 H 0.248 0.752 51 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 4.419 21.360 6.446 22.745 hybrid contribution -1.086 -1.313 -0.784 1.875 sum 3.333 20.048 5.663 21.097 Atomic orbital electron populations 1.20882 0.90187 1.03212 1.03069 1.19975 0.96951 0.92398 0.98778 1.21235 0.94571 0.97716 1.01894 1.21417 0.94574 0.98526 0.99126 1.21348 1.00650 0.92529 1.01656 1.21166 0.93810 0.98562 0.97051 1.19853 0.94059 0.93862 1.02836 1.19226 0.95290 0.89477 0.83385 0.87595 1.22266 1.00257 0.91492 1.05152 1.21045 0.87856 0.85912 0.75853 1.90575 1.16761 1.86953 1.51591 1.48084 1.09035 1.08091 1.67398 1.19215 0.91860 0.82768 0.95610 1.21467 1.33064 1.04955 0.95774 0.95454 1.25765 0.96672 0.97498 0.98731 1.70053 1.45048 1.17792 1.25871 0.85809 0.79438 0.77645 0.80628 1.20106 1.20485 1.16478 1.21351 0.79106 1.00986 0.96188 1.22124 1.03441 1.01485 0.94246 1.22029 1.00677 1.00049 0.97807 1.44880 1.09353 1.76585 1.06468 1.16232 0.85226 0.77382 0.81438 1.42898 1.12807 1.76689 1.10309 1.90847 1.14724 1.60222 1.84430 0.90124 0.90354 0.91875 0.84242 0.84110 0.84997 0.86497 0.87635 0.86217 0.93835 0.96424 0.92583 0.87811 0.93430 0.88741 0.91569 0.95742 0.89467 0.93485 0.75936 0.75206 0.76371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.00 9.32 71.24 0.66 -1.33 16 2 C -0.08 -1.75 5.88 -19.87 -0.12 -1.86 16 3 C -0.14 -2.62 9.70 22.27 0.22 -2.40 16 4 C -0.12 -2.26 10.05 22.27 0.22 -2.04 16 5 C -0.14 -3.16 10.05 22.27 0.22 -2.93 16 6 C -0.09 -2.24 7.59 22.27 0.17 -2.07 16 7 C -0.10 -2.65 4.58 -19.87 -0.09 -2.74 16 8 C 0.23 6.37 1.54 44.25 0.07 6.43 16 9 H 0.11 2.78 7.35 -2.39 -0.02 2.76 16 10 C -0.15 -4.61 2.06 29.85 0.06 -4.55 16 11 C 0.50 20.10 7.53 87.66 0.66 20.76 16 12 O -0.58 -26.53 14.93 -3.05 -0.05 -26.57 16 13 N -0.60 -24.30 2.39 -802.16 -1.91 -26.21 16 14 C 0.23 11.03 3.66 85.64 0.31 11.35 16 15 C -0.51 -29.90 8.38 25.60 0.21 -29.68 16 16 H 0.03 1.81 7.87 -2.91 -0.02 1.78 16 17 C 0.01 0.63 5.47 84.66 0.46 1.09 16 18 N -0.95 -59.79 13.96 21.45 0.30 -59.49 16 19 Si 0.94 44.53 27.47 68.60 1.88 46.41 16 20 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 21 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 22 H -0.24 -10.34 6.54 99.48 0.65 -9.69 16 23 C 0.13 4.05 3.17 44.99 0.14 4.19 16 24 C -0.16 -3.98 9.17 71.98 0.66 -3.31 16 25 C -0.15 -5.27 8.47 71.98 0.61 -4.66 16 26 N -0.72 -20.23 3.63 -461.40 -1.68 -21.90 16 27 C 0.70 22.12 8.22 179.05 1.47 23.60 16 28 N -0.86 -21.77 8.88 -184.75 -1.64 -23.41 16 29 O -0.62 -22.95 13.17 -3.99 -0.05 -23.00 16 30 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 31 H 0.08 1.09 8.09 -2.39 -0.02 1.07 16 32 H 0.06 1.14 5.83 -2.39 -0.01 1.13 16 33 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 34 H 0.14 1.91 8.06 -2.91 -0.02 1.88 16 35 H 0.13 2.38 8.06 -2.91 -0.02 2.36 16 36 H 0.12 3.13 5.96 -2.91 -0.02 3.11 16 37 H 0.11 3.60 4.69 -2.39 -0.01 3.59 16 38 H 0.12 2.94 7.57 -2.39 -0.02 2.92 16 39 H 0.04 1.99 5.48 -2.39 -0.01 1.98 16 40 H 0.02 0.92 6.85 -2.39 -0.02 0.90 16 41 H 0.27 15.66 8.31 -92.71 -0.77 14.88 16 42 H 0.10 2.80 5.77 -2.39 -0.01 2.79 16 43 H 0.05 1.39 6.66 -2.39 -0.02 1.37 16 44 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 46 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 48 H 0.05 1.96 6.92 -2.38 -0.02 1.95 16 49 H 0.41 10.15 8.35 -92.71 -0.77 9.37 16 50 H 0.42 9.74 8.93 -92.71 -0.83 8.91 16 51 H 0.41 8.30 8.85 -92.71 -0.82 7.48 16 Total: -1.00 -79.74 398.41 1.32 -78.42 By element: Atomic # 1 Polarization: 47.41 SS G_CDS: -1.49 Total: 45.92 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: 5.95 Total: 9.84 kcal Atomic # 7 Polarization: -126.08 SS G_CDS: -4.93 Total: -131.01 kcal Atomic # 8 Polarization: -49.48 SS G_CDS: -0.10 Total: -49.57 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.88 Total: 46.41 kcal Total: -79.74 1.32 -78.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523281049.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.825 kcal (2) G-P(sol) polarization free energy of solvation -79.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds