Wall clock time and date at job start Wed Apr 1 2020 05:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38042 * 119.99964 * 2 1 4 4 C 1.38901 * 120.00260 * 179.97438 * 3 2 1 5 5 N 1.39829 * 120.00098 * 179.97438 * 4 3 2 6 6 C 1.46503 * 120.00144 * 5.84691 * 5 4 3 7 7 C 1.46500 * 120.00081 * 185.84794 * 5 4 3 8 8 C 1.38946 * 120.00072 * 359.95423 * 4 3 2 9 9 C 1.38001 * 120.00097 * 0.04339 * 8 4 3 10 10 C 1.38903 * 120.00187 * 179.97438 * 2 1 3 11 11 N 1.39898 * 120.00057 * 359.74643 * 10 2 1 12 12 C 1.34772 * 119.99758 * 208.15596 * 11 10 2 13 13 O 1.21388 * 120.00400 * 357.03294 * 12 11 10 14 14 C 1.49332 * 119.99750 * 177.03715 * 12 11 10 15 15 O 1.21360 * 119.99753 * 3.56369 * 14 12 11 16 16 N 1.34773 * 120.00077 * 183.56699 * 14 12 11 17 17 C 1.46506 * 119.99823 * 1.43648 * 16 14 12 18 18 C 1.50697 * 109.47124 * 82.03961 * 17 16 14 19 19 H 1.07998 * 120.00169 * 359.97438 * 18 17 16 20 20 C 1.37880 * 119.99807 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00022 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99848 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47184 * 89.99899 * 22 20 18 24 24 H 1.48505 * 109.47037 * 210.00178 * 22 20 18 25 25 H 1.48505 * 109.47225 * 329.99804 * 22 20 18 26 26 C 1.46493 * 120.00093 * 181.43676 * 16 14 12 27 27 C 1.53000 * 109.47350 * 301.32485 * 26 16 14 28 28 C 1.53006 * 109.47419 * 61.32342 * 26 16 14 29 29 H 1.08998 * 109.47235 * 270.02079 * 1 2 3 30 30 H 1.08994 * 109.47075 * 30.02404 * 1 2 3 31 31 H 1.09000 * 109.46905 * 150.02255 * 1 2 3 32 32 H 1.08006 * 120.00276 * 359.97438 * 3 2 1 33 33 H 1.09000 * 109.46918 * 90.00431 * 6 5 4 34 34 H 1.08999 * 109.47626 * 209.99900 * 6 5 4 35 35 H 1.08998 * 109.47133 * 330.00592 * 6 5 4 36 36 H 1.08997 * 109.47078 * 5.95434 * 7 5 4 37 37 H 1.09004 * 109.46980 * 125.95439 * 7 5 4 38 38 H 1.08997 * 109.47191 * 245.94933 * 7 5 4 39 39 H 1.07990 * 119.99574 * 180.02562 * 8 4 3 40 40 H 1.07997 * 120.00253 * 179.97438 * 9 8 4 41 41 H 0.96994 * 119.99693 * 28.16061 * 11 10 2 42 42 H 1.08999 * 109.46540 * 202.03820 * 17 16 14 43 43 H 1.09000 * 109.46957 * 322.03717 * 17 16 14 44 44 H 0.97002 * 119.99712 * 180.02562 * 21 20 18 45 45 H 1.09006 * 109.47738 * 181.32273 * 26 16 14 46 46 H 1.08999 * 109.46904 * 66.56309 * 27 26 16 47 47 H 1.08999 * 109.47282 * 186.56684 * 27 26 16 48 48 H 1.08999 * 109.46963 * 306.56385 * 27 26 16 49 49 H 1.08996 * 109.46752 * 64.71822 * 28 26 16 50 50 H 1.08994 * 109.47350 * 184.71809 * 28 26 16 51 51 H 1.09002 * 109.47014 * 304.72577 * 28 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1955 0.0000 4 6 3.5862 1.1956 0.0005 5 7 4.2853 2.4065 0.0000 6 6 3.5585 3.6721 0.1281 7 6 5.7447 2.4098 -0.1287 8 6 4.2810 -0.0077 0.0020 9 6 3.5911 -1.2029 0.0021 10 6 2.2016 -1.2029 0.0005 11 7 1.5021 -2.4145 0.0064 12 6 2.0586 -3.5111 0.5580 13 8 3.1875 -3.4613 1.0013 14 6 1.2863 -4.7875 0.6237 15 8 0.1829 -4.8556 0.1230 16 7 1.8146 -5.8639 1.2391 17 6 3.1332 -5.7725 1.8710 18 6 2.9926 -5.1596 3.2405 19 1 2.0185 -4.8670 3.6038 20 6 4.1075 -4.9725 4.0298 21 7 5.2937 -5.3284 3.5873 22 14 3.9333 -4.2121 5.7271 23 1 3.7098 -5.2848 6.7295 24 1 5.1732 -3.4684 6.0660 25 1 2.7784 -3.2786 5.7352 26 6 1.0704 -7.1251 1.2762 27 6 -0.2788 -6.9013 1.9621 28 6 0.8399 -7.6235 -0.1520 29 1 -0.3633 0.0004 1.0276 30 1 -0.3633 0.8897 -0.5142 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6572 2.1309 -0.0004 33 1 3.4686 3.9343 1.1823 34 1 4.1018 4.4579 -0.3966 35 1 2.5643 3.5656 -0.3059 36 1 6.0950 1.3952 -0.3181 37 1 6.0348 3.0551 -0.9579 38 1 6.1899 2.7817 0.7940 39 1 5.3609 -0.0076 0.0029 40 1 4.1311 -2.1382 0.0028 41 1 0.6168 -2.4652 -0.3865 42 1 3.5624 -6.7703 1.9618 43 1 3.7867 -5.1501 1.2597 44 1 6.0781 -5.1970 4.1428 45 1 1.6420 -7.8682 1.8324 46 1 -0.8961 -6.2483 1.3452 47 1 -0.7824 -7.8589 2.0945 48 1 -0.1190 -6.4373 2.9354 49 1 1.7985 -7.8627 -0.6124 50 1 0.2151 -8.5163 -0.1288 51 1 0.3421 -6.8465 -0.7321 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000559653449.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:31 Heat of formation + Delta-G solvation = -6.531469 kcal Electronic energy + Delta-G solvation = -31777.202861 eV Core-core repulsion = 27678.072855 eV Total energy + Delta-G solvation = -4099.130006 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.60536 -39.51116 -38.14068 -36.47537 -35.66037 -33.69187 -32.95570 -32.38788 -31.32029 -29.39230 -28.54593 -26.98485 -26.70212 -26.39915 -25.23819 -23.80840 -22.55825 -22.14952 -21.06248 -19.90847 -18.96195 -17.46015 -16.90429 -16.54383 -16.43653 -15.66913 -15.42382 -15.19102 -15.03756 -14.84464 -14.25553 -14.18424 -13.96255 -13.84133 -13.59330 -13.32638 -13.18759 -13.06448 -12.71358 -12.64781 -12.52748 -12.20291 -12.15531 -12.02688 -11.88792 -11.81452 -11.70760 -11.48752 -11.38093 -10.96686 -10.90103 -10.83050 -10.75879 -10.71373 -10.28698 -10.17404 -9.69703 -9.56925 -8.81464 -8.59068 -8.48822 -8.15337 -7.75383 -6.84128 -5.99306 -4.01539 1.56908 1.71303 2.33204 3.00456 3.16265 3.32683 3.39358 3.43835 3.88791 4.18427 4.20154 4.49354 4.83046 4.88215 5.03187 5.08168 5.15557 5.24009 5.30837 5.37084 5.43117 5.47788 5.48956 5.58368 5.60974 5.63462 5.70262 5.73219 5.75571 5.83476 5.99573 6.02218 6.10994 6.27047 6.28123 6.36759 6.37468 6.41561 6.62308 6.70878 6.73833 6.80834 6.85355 7.15825 7.31073 7.46672 7.51421 7.63478 7.72521 7.90492 8.18209 8.24866 8.49570 8.77316 9.00952 9.61450 11.09356 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009727 B = 0.003747 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2877.847820 B = 7470.900240 C = 9254.517133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.071 4.071 3 C -0.181 4.181 4 C 0.194 3.806 5 N -0.643 5.643 6 C 0.097 3.903 7 C 0.092 3.908 8 C -0.180 4.180 9 C -0.074 4.074 10 C 0.102 3.898 11 N -0.653 5.653 12 C 0.492 3.508 13 O -0.444 6.444 14 C 0.510 3.490 15 O -0.559 6.559 16 N -0.554 5.554 17 C 0.219 3.781 18 C -0.517 4.517 19 H 0.053 0.947 20 C 0.070 3.930 21 N -0.889 5.889 22 Si 0.891 3.109 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.276 1.276 26 C 0.142 3.858 27 C -0.165 4.165 28 C -0.167 4.167 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.122 0.878 33 H 0.044 0.956 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.051 0.949 38 H 0.048 0.952 39 H 0.125 0.875 40 H 0.152 0.848 41 H 0.412 0.588 42 H 0.030 0.970 43 H 0.079 0.921 44 H 0.261 0.739 45 H 0.089 0.911 46 H 0.074 0.926 47 H 0.054 0.946 48 H 0.058 0.942 49 H 0.052 0.948 50 H 0.059 0.941 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.314 11.553 -9.753 16.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.074 4.074 3 C -0.203 4.203 4 C 0.094 3.906 5 N -0.357 5.357 6 C -0.046 4.046 7 C -0.051 4.051 8 C -0.202 4.202 9 C -0.095 4.095 10 C 0.006 3.994 11 N -0.302 5.302 12 C 0.274 3.726 13 O -0.313 6.313 14 C 0.293 3.707 15 O -0.441 6.441 16 N -0.284 5.284 17 C 0.100 3.900 18 C -0.556 4.556 19 H 0.071 0.929 20 C -0.132 4.132 21 N -0.528 5.528 22 Si 0.719 3.281 23 H -0.208 1.208 24 H -0.212 1.212 25 H -0.201 1.201 26 C 0.039 3.961 27 C -0.223 4.223 28 C -0.224 4.224 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.140 0.860 33 H 0.062 0.938 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.142 0.858 40 H 0.170 0.830 41 H 0.249 0.751 42 H 0.048 0.952 43 H 0.096 0.904 44 H 0.071 0.929 45 H 0.107 0.893 46 H 0.093 0.907 47 H 0.073 0.927 48 H 0.077 0.923 49 H 0.071 0.929 50 H 0.078 0.922 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.733 11.582 -9.578 15.757 hybrid contribution -0.270 0.488 1.117 1.248 sum -5.003 12.070 -8.462 15.566 Atomic orbital electron populations 1.20691 0.91232 1.02287 1.02511 1.19338 0.95523 0.91227 1.01362 1.20208 0.91777 0.97153 1.11189 1.17788 0.91069 0.85558 0.96203 1.46194 1.05319 1.03162 1.81072 1.21538 0.97227 0.85170 1.00686 1.21641 0.79989 1.03077 1.00384 1.20632 0.99612 0.90537 1.09458 1.21376 0.92459 0.99276 0.96346 1.17408 0.91314 0.84337 1.06335 1.43165 1.21150 1.07459 1.58412 1.20433 0.87804 0.85216 0.79181 1.90829 1.17183 1.82351 1.40912 1.19697 0.85833 0.84874 0.80303 1.90584 1.20197 1.84303 1.48971 1.48400 1.21255 1.08529 1.50256 1.20177 0.77204 0.98552 0.94038 1.21230 0.93492 1.41225 0.99670 0.92909 1.24782 0.95056 0.95319 0.98037 1.69916 0.98176 1.47624 1.37074 0.86618 0.77601 0.79361 0.84543 1.20774 1.21164 1.20080 1.21049 0.93255 0.85524 0.96264 1.22172 0.97071 1.01747 1.01314 1.22190 1.01628 1.01459 0.97171 0.90968 0.91519 0.91827 0.86015 0.93778 0.92013 0.91475 0.90269 0.93002 0.93371 0.85758 0.83049 0.75087 0.95215 0.90366 0.92921 0.89273 0.90722 0.92691 0.92283 0.92934 0.92225 0.90816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.24 9.75 36.01 0.35 -0.89 16 2 C -0.07 -1.02 5.89 -104.45 -0.62 -1.64 16 3 C -0.18 -2.42 8.90 -39.41 -0.35 -2.77 16 4 C 0.19 2.73 6.54 -83.70 -0.55 2.18 16 5 N -0.64 -7.45 3.41 -187.49 -0.64 -8.09 16 6 C 0.10 0.84 10.36 59.85 0.62 1.46 16 7 C 0.09 0.88 10.59 59.85 0.63 1.51 16 8 C -0.18 -2.79 9.26 -39.41 -0.36 -3.16 16 9 C -0.07 -1.31 8.74 -39.40 -0.34 -1.66 16 10 C 0.10 1.72 6.40 -83.66 -0.54 1.18 16 11 N -0.65 -11.26 5.12 -10.26 -0.05 -11.31 16 12 C 0.49 10.18 7.60 -11.64 -0.09 10.09 16 13 O -0.44 -10.52 9.45 5.46 0.05 -10.47 16 14 C 0.51 10.61 7.06 -11.64 -0.08 10.53 16 15 O -0.56 -11.18 12.75 5.49 0.07 -11.11 16 16 N -0.55 -11.83 2.43 -168.02 -0.41 -12.24 16 17 C 0.22 5.47 4.78 -5.19 -0.02 5.45 16 18 C -0.52 -14.24 8.31 -34.44 -0.29 -14.52 16 19 H 0.05 1.49 7.81 -52.49 -0.41 1.08 16 20 C 0.07 1.98 5.46 -17.82 -0.10 1.89 16 21 N -0.89 -25.89 13.29 55.43 0.74 -25.15 16 22 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 26 C 0.14 2.58 3.27 -67.93 -0.22 2.35 16 27 C -0.17 -2.80 8.98 37.16 0.33 -2.46 16 28 C -0.17 -2.59 9.20 37.16 0.34 -2.25 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 31 H 0.06 0.68 6.43 -51.93 -0.33 0.35 16 32 H 0.12 1.33 6.02 -52.48 -0.32 1.02 16 33 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.42 8.07 -51.93 -0.42 0.00 16 35 H 0.07 0.54 5.99 -51.93 -0.31 0.23 16 36 H 0.08 0.78 5.41 -51.93 -0.28 0.49 16 37 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.12 1.74 5.84 -52.49 -0.31 1.43 16 40 H 0.15 2.99 5.73 -52.49 -0.30 2.69 16 41 H 0.41 6.19 6.46 -40.82 -0.26 5.93 16 42 H 0.03 0.77 7.77 -51.93 -0.40 0.37 16 43 H 0.08 2.11 5.38 -51.94 -0.28 1.83 16 44 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 45 H 0.09 1.59 7.70 -51.93 -0.40 1.19 16 46 H 0.07 1.32 6.25 -51.93 -0.32 1.00 16 47 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 49 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 50 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 51 H 0.07 1.24 6.20 -51.93 -0.32 0.92 16 LS Contribution 400.99 15.07 6.04 6.04 Total: -1.00 -31.69 400.99 -8.11 -39.80 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -7.61 Total: 8.17 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: -1.28 Total: 7.31 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: -0.36 Total: -56.79 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: 0.12 Total: -21.58 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.69 -8.11 -39.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000559653449.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.268 kcal (2) G-P(sol) polarization free energy of solvation -31.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds