Wall clock time and date at job start Wed Apr 1 2020 05:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38042 * 119.99964 * 2 1 4 4 C 1.38901 * 120.00260 * 179.97438 * 3 2 1 5 5 N 1.39829 * 120.00098 * 179.97438 * 4 3 2 6 6 C 1.46503 * 120.00144 * 5.84691 * 5 4 3 7 7 C 1.46500 * 120.00081 * 185.84794 * 5 4 3 8 8 C 1.38946 * 120.00072 * 359.95423 * 4 3 2 9 9 C 1.38001 * 120.00097 * 0.04339 * 8 4 3 10 10 C 1.38903 * 120.00187 * 179.97438 * 2 1 3 11 11 N 1.39898 * 120.00057 * 359.74643 * 10 2 1 12 12 C 1.34772 * 119.99758 * 208.15596 * 11 10 2 13 13 O 1.21388 * 120.00400 * 357.03294 * 12 11 10 14 14 C 1.49332 * 119.99750 * 177.03715 * 12 11 10 15 15 O 1.21360 * 119.99753 * 3.56369 * 14 12 11 16 16 N 1.34773 * 120.00077 * 183.56699 * 14 12 11 17 17 C 1.46506 * 119.99823 * 1.43648 * 16 14 12 18 18 C 1.50697 * 109.47124 * 82.03961 * 17 16 14 19 19 H 1.07998 * 120.00169 * 359.97438 * 18 17 16 20 20 C 1.37880 * 119.99807 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00022 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99848 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47184 * 89.99899 * 22 20 18 24 24 H 1.48505 * 109.47037 * 210.00178 * 22 20 18 25 25 H 1.48505 * 109.47225 * 329.99804 * 22 20 18 26 26 C 1.46493 * 120.00093 * 181.43676 * 16 14 12 27 27 C 1.53000 * 109.47350 * 301.32485 * 26 16 14 28 28 C 1.53006 * 109.47419 * 61.32342 * 26 16 14 29 29 H 1.08998 * 109.47235 * 270.02079 * 1 2 3 30 30 H 1.08994 * 109.47075 * 30.02404 * 1 2 3 31 31 H 1.09000 * 109.46905 * 150.02255 * 1 2 3 32 32 H 1.08006 * 120.00276 * 359.97438 * 3 2 1 33 33 H 1.09000 * 109.46918 * 90.00431 * 6 5 4 34 34 H 1.08999 * 109.47626 * 209.99900 * 6 5 4 35 35 H 1.08998 * 109.47133 * 330.00592 * 6 5 4 36 36 H 1.08997 * 109.47078 * 5.95434 * 7 5 4 37 37 H 1.09004 * 109.46980 * 125.95439 * 7 5 4 38 38 H 1.08997 * 109.47191 * 245.94933 * 7 5 4 39 39 H 1.07990 * 119.99574 * 180.02562 * 8 4 3 40 40 H 1.07997 * 120.00253 * 179.97438 * 9 8 4 41 41 H 0.96994 * 119.99693 * 28.16061 * 11 10 2 42 42 H 1.08999 * 109.46540 * 202.03820 * 17 16 14 43 43 H 1.09000 * 109.46957 * 322.03717 * 17 16 14 44 44 H 0.97002 * 119.99712 * 180.02562 * 21 20 18 45 45 H 1.09006 * 109.47738 * 181.32273 * 26 16 14 46 46 H 1.08999 * 109.46904 * 66.56309 * 27 26 16 47 47 H 1.08999 * 109.47282 * 186.56684 * 27 26 16 48 48 H 1.08999 * 109.46963 * 306.56385 * 27 26 16 49 49 H 1.08996 * 109.46752 * 64.71822 * 28 26 16 50 50 H 1.08994 * 109.47350 * 184.71809 * 28 26 16 51 51 H 1.09002 * 109.47014 * 304.72577 * 28 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1955 0.0000 4 6 3.5862 1.1956 0.0005 5 7 4.2853 2.4065 0.0000 6 6 3.5585 3.6721 0.1281 7 6 5.7447 2.4098 -0.1287 8 6 4.2810 -0.0077 0.0020 9 6 3.5911 -1.2029 0.0021 10 6 2.2016 -1.2029 0.0005 11 7 1.5021 -2.4145 0.0064 12 6 2.0586 -3.5111 0.5580 13 8 3.1875 -3.4613 1.0013 14 6 1.2863 -4.7875 0.6237 15 8 0.1829 -4.8556 0.1230 16 7 1.8146 -5.8639 1.2391 17 6 3.1332 -5.7725 1.8710 18 6 2.9926 -5.1596 3.2405 19 1 2.0185 -4.8670 3.6038 20 6 4.1075 -4.9725 4.0298 21 7 5.2937 -5.3284 3.5873 22 14 3.9333 -4.2121 5.7271 23 1 3.7098 -5.2848 6.7295 24 1 5.1732 -3.4684 6.0660 25 1 2.7784 -3.2786 5.7352 26 6 1.0704 -7.1251 1.2762 27 6 -0.2788 -6.9013 1.9621 28 6 0.8399 -7.6235 -0.1520 29 1 -0.3633 0.0004 1.0276 30 1 -0.3633 0.8897 -0.5142 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6572 2.1309 -0.0004 33 1 3.4686 3.9343 1.1823 34 1 4.1018 4.4579 -0.3966 35 1 2.5643 3.5656 -0.3059 36 1 6.0950 1.3952 -0.3181 37 1 6.0348 3.0551 -0.9579 38 1 6.1899 2.7817 0.7940 39 1 5.3609 -0.0076 0.0029 40 1 4.1311 -2.1382 0.0028 41 1 0.6168 -2.4652 -0.3865 42 1 3.5624 -6.7703 1.9618 43 1 3.7867 -5.1501 1.2597 44 1 6.0781 -5.1970 4.1428 45 1 1.6420 -7.8682 1.8324 46 1 -0.8961 -6.2483 1.3452 47 1 -0.7824 -7.8589 2.0945 48 1 -0.1190 -6.4373 2.9354 49 1 1.7985 -7.8627 -0.6124 50 1 0.2151 -8.5163 -0.1288 51 1 0.3421 -6.8465 -0.7321 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000559653449.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:30 Heat of formation + Delta-G solvation = -24.957103 kcal Electronic energy + Delta-G solvation = -31778.001856 eV Core-core repulsion = 27678.072855 eV Total energy + Delta-G solvation = -4099.929001 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.10236 -40.83757 -39.54572 -37.76144 -37.17795 -35.03241 -34.90741 -33.51772 -33.03078 -30.47834 -29.43552 -28.95301 -28.02923 -27.42238 -26.52934 -25.19573 -24.41432 -23.40519 -22.39955 -21.05971 -20.44043 -18.89435 -18.57656 -18.28740 -17.69877 -17.05801 -16.90847 -16.71510 -16.38858 -16.05929 -15.90806 -15.60294 -15.21982 -15.13600 -14.76092 -14.59527 -14.45337 -14.31441 -14.25398 -13.99905 -13.79059 -13.45579 -13.30800 -13.25964 -13.04785 -12.93498 -12.83861 -12.80805 -12.75879 -12.69622 -12.55666 -12.42358 -12.21154 -12.14035 -11.92432 -11.65065 -11.51763 -11.29574 -10.59507 -10.04593 -9.88291 -9.64469 -9.51220 -8.14649 -7.93219 -6.22984 0.25194 0.48510 0.86275 1.34526 1.36968 1.44984 1.52042 2.27083 2.32648 2.40937 2.69235 2.93359 3.18572 3.45765 3.83904 3.97018 4.04239 4.15661 4.23568 4.35040 4.35236 4.41772 4.43445 4.55494 4.58602 4.66767 4.71825 4.79675 4.80532 4.81874 4.88687 4.92895 4.93118 4.99918 5.05912 5.07230 5.09812 5.21328 5.26541 5.32792 5.36967 5.43027 5.53412 5.58634 5.73925 5.81939 5.96385 6.12502 6.26494 6.39337 6.40581 6.56384 6.83803 6.92367 7.20030 7.43140 8.93401 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009727 B = 0.003747 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2877.847820 B = 7470.900240 C = 9254.517133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.063 4.063 3 C -0.181 4.181 4 C 0.199 3.801 5 N -0.645 5.645 6 C 0.090 3.910 7 C 0.085 3.915 8 C -0.198 4.198 9 C -0.094 4.094 10 C 0.066 3.934 11 N -0.634 5.634 12 C 0.484 3.516 13 O -0.484 6.484 14 C 0.509 3.491 15 O -0.550 6.550 16 N -0.561 5.561 17 C 0.238 3.762 18 C -0.520 4.520 19 H 0.042 0.958 20 C 0.023 3.977 21 N -0.919 5.919 22 Si 0.947 3.053 23 H -0.267 1.267 24 H -0.283 1.283 25 H -0.279 1.279 26 C 0.129 3.871 27 C -0.155 4.155 28 C -0.155 4.155 29 H 0.074 0.926 30 H 0.096 0.904 31 H 0.066 0.934 32 H 0.154 0.846 33 H 0.047 0.953 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.055 0.945 39 H 0.130 0.870 40 H 0.119 0.881 41 H 0.421 0.579 42 H 0.017 0.983 43 H 0.057 0.943 44 H 0.263 0.737 45 H 0.089 0.911 46 H 0.066 0.934 47 H 0.089 0.911 48 H 0.036 0.964 49 H 0.050 0.950 50 H 0.092 0.908 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.185 13.578 -9.893 18.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.066 4.066 3 C -0.203 4.203 4 C 0.097 3.903 5 N -0.358 5.358 6 C -0.052 4.052 7 C -0.057 4.057 8 C -0.221 4.221 9 C -0.115 4.115 10 C -0.029 4.029 11 N -0.283 5.283 12 C 0.266 3.734 13 O -0.356 6.356 14 C 0.291 3.709 15 O -0.431 6.431 16 N -0.291 5.291 17 C 0.117 3.883 18 C -0.559 4.559 19 H 0.060 0.940 20 C -0.176 4.176 21 N -0.558 5.558 22 Si 0.773 3.227 23 H -0.192 1.192 24 H -0.209 1.209 25 H -0.205 1.205 26 C 0.027 3.973 27 C -0.213 4.213 28 C -0.213 4.213 29 H 0.092 0.908 30 H 0.115 0.885 31 H 0.085 0.915 32 H 0.172 0.828 33 H 0.065 0.935 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.074 0.926 39 H 0.147 0.853 40 H 0.137 0.863 41 H 0.261 0.739 42 H 0.035 0.965 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.107 0.893 46 H 0.085 0.915 47 H 0.108 0.892 48 H 0.056 0.944 49 H 0.069 0.931 50 H 0.111 0.889 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.645 13.646 -9.746 18.037 hybrid contribution 0.316 0.006 1.080 1.125 sum -6.330 13.652 -8.665 17.365 Atomic orbital electron populations 1.20786 0.88833 1.03999 1.03085 1.19693 0.97245 0.90324 0.99293 1.20578 0.91605 0.98041 1.10114 1.17942 0.91713 0.86030 0.94652 1.46517 1.06222 1.03221 1.79851 1.21773 0.97861 0.84218 1.01373 1.21793 0.79068 1.03164 1.01696 1.20694 1.00062 0.90714 1.10591 1.21210 0.93259 0.98889 0.98152 1.17608 0.91199 0.84920 1.09137 1.42982 1.21230 1.06969 1.57094 1.20562 0.87493 0.86007 0.79315 1.90829 1.18618 1.83016 1.43138 1.19767 0.85951 0.84908 0.80239 1.90571 1.19669 1.84271 1.48607 1.48352 1.20426 1.10025 1.50334 1.19671 0.78808 0.96837 0.92951 1.21390 0.92918 1.40890 1.00720 0.94018 1.25500 0.94846 0.95858 1.01441 1.70018 0.98735 1.48752 1.38340 0.85728 0.77265 0.78788 0.80886 1.19206 1.20874 1.20465 1.21383 0.93450 0.84169 0.98262 1.22089 0.96339 1.03259 0.99613 1.22098 1.02090 1.02216 0.94893 0.90780 0.88509 0.91493 0.82818 0.93477 0.89701 0.90460 0.91229 0.90671 0.92621 0.85276 0.86288 0.73920 0.96540 0.92581 0.92837 0.89318 0.91517 0.89207 0.94450 0.93051 0.88933 0.92064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.21 9.75 71.24 0.69 -1.52 16 2 C -0.06 -1.71 5.89 -19.75 -0.12 -1.83 16 3 C -0.18 -4.43 8.90 22.38 0.20 -4.23 16 4 C 0.20 5.37 6.54 38.19 0.25 5.62 16 5 N -0.65 -13.51 3.41 -747.10 -2.55 -16.06 16 6 C 0.09 1.25 10.36 127.77 1.32 2.57 16 7 C 0.09 1.49 10.59 127.77 1.35 2.84 16 8 C -0.20 -6.36 9.26 22.38 0.21 -6.15 16 9 C -0.09 -3.57 8.74 22.39 0.20 -3.37 16 10 C 0.07 2.30 6.40 38.19 0.24 2.54 16 11 N -0.63 -22.52 5.12 -304.72 -1.56 -24.08 16 12 C 0.48 21.07 7.60 87.23 0.66 21.73 16 13 O -0.48 -24.59 9.45 -3.36 -0.03 -24.62 16 14 C 0.51 21.74 7.06 87.23 0.62 22.35 16 15 O -0.55 -22.01 12.75 -3.28 -0.04 -22.05 16 16 N -0.56 -24.67 2.43 -803.85 -1.96 -26.63 16 17 C 0.24 12.46 4.78 85.63 0.41 12.87 16 18 C -0.52 -29.61 8.31 25.60 0.21 -29.40 16 19 H 0.04 2.41 7.81 -2.91 -0.02 2.39 16 20 C 0.02 1.33 5.46 84.66 0.46 1.79 16 21 N -0.92 -55.15 13.29 21.45 0.28 -54.87 16 22 Si 0.95 45.99 29.54 68.60 2.03 48.01 16 23 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 24 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 25 H -0.28 -13.61 7.11 99.48 0.71 -12.91 16 26 C 0.13 4.65 3.27 44.99 0.15 4.80 16 27 C -0.16 -5.10 8.98 71.98 0.65 -4.45 16 28 C -0.16 -4.64 9.20 71.98 0.66 -3.98 16 29 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.10 1.37 8.08 -2.39 -0.02 1.35 16 31 H 0.07 1.29 6.43 -2.39 -0.02 1.28 16 32 H 0.15 2.73 6.02 -2.91 -0.02 2.72 16 33 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.08 0.82 8.07 -2.39 -0.02 0.80 16 35 H 0.08 0.92 5.99 -2.39 -0.01 0.91 16 36 H 0.07 1.34 5.41 -2.39 -0.01 1.33 16 37 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 38 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.13 3.83 5.84 -2.92 -0.02 3.81 16 40 H 0.12 5.23 5.73 -2.91 -0.02 5.22 16 41 H 0.42 12.73 6.46 -92.71 -0.60 12.13 16 42 H 0.02 0.90 7.77 -2.39 -0.02 0.88 16 43 H 0.06 3.24 5.38 -2.51 -0.01 3.23 16 44 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 45 H 0.09 3.17 7.70 -2.38 -0.02 3.15 16 46 H 0.07 2.29 6.25 -2.39 -0.01 2.27 16 47 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 48 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 49 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 50 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 51 H 0.06 1.99 6.20 -2.39 -0.01 1.98 16 Total: -1.00 -71.21 400.99 4.70 -66.51 By element: Atomic # 1 Polarization: 31.24 SS G_CDS: 0.36 Total: 31.60 kcal Atomic # 6 Polarization: 14.03 SS G_CDS: 8.17 Total: 22.19 kcal Atomic # 7 Polarization: -115.86 SS G_CDS: -5.78 Total: -121.64 kcal Atomic # 8 Polarization: -46.60 SS G_CDS: -0.07 Total: -46.67 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.01 kcal Total: -71.21 4.70 -66.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000559653449.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.548 kcal (2) G-P(sol) polarization free energy of solvation -71.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds