Wall clock time and date at job start Wed Apr 1 2020 05:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38280 * 119.93319 * 2 1 4 4 C 1.38107 * 120.07461 * 179.97438 * 3 2 1 5 5 C 1.38876 * 119.92993 * 359.97438 * 4 3 2 6 6 N 1.39921 * 120.07054 * 179.97438 * 5 4 3 7 7 C 1.34771 * 120.00377 * 35.08501 * 6 5 4 8 8 O 1.21292 * 119.99776 * 355.37797 * 7 6 5 9 9 C 1.50703 * 120.00482 * 175.37416 * 7 6 5 10 10 N 1.46497 * 109.47268 * 180.02562 * 9 7 6 11 11 C 1.46500 * 119.99601 * 269.99758 * 10 9 7 12 12 C 1.34773 * 120.00151 * 90.00035 * 10 9 7 13 13 O 1.21274 * 120.00162 * 0.02562 * 12 10 9 14 14 C 1.50703 * 119.99975 * 180.02562 * 12 10 9 15 15 H 1.08998 * 109.47559 * 39.99746 * 14 12 10 16 16 N 1.46896 * 109.47114 * 160.00045 * 14 12 10 17 17 C 1.53004 * 109.46943 * 279.99602 * 14 12 10 18 18 C 1.53002 * 109.47125 * 174.99605 * 17 14 12 19 19 C 1.52999 * 109.47374 * 180.02562 * 18 17 14 20 20 C 1.50695 * 109.47192 * 180.02562 * 19 18 17 21 21 H 1.08002 * 120.00416 * 0.02562 * 20 19 18 22 22 C 1.37878 * 119.99849 * 179.97438 * 20 19 18 23 23 N 1.31517 * 120.00156 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99905 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46822 * 90.00991 * 24 22 20 26 26 H 1.48501 * 109.47221 * 210.00491 * 24 22 20 27 27 H 1.48498 * 109.47224 * 330.00924 * 24 22 20 28 28 C 1.38874 * 119.85541 * 0.25276 * 5 4 3 29 29 C 1.38109 * 119.92967 * 359.51034 * 28 5 4 30 30 H 1.09000 * 109.47488 * 89.99547 * 1 2 3 31 31 H 1.09004 * 109.47099 * 209.99862 * 1 2 3 32 32 H 1.09002 * 109.46728 * 329.99343 * 1 2 3 33 33 H 1.08008 * 119.96099 * 359.97438 * 3 2 1 34 34 H 1.08003 * 120.03607 * 179.97438 * 4 3 2 35 35 H 0.97001 * 120.00107 * 215.09072 * 6 5 4 36 36 H 1.08995 * 109.46925 * 60.00059 * 9 7 6 37 37 H 1.08997 * 109.46752 * 300.00527 * 9 7 6 38 38 H 1.08998 * 109.47616 * 269.99571 * 11 10 9 39 39 H 1.09002 * 109.47426 * 30.00616 * 11 10 9 40 40 H 1.09006 * 109.46610 * 150.00150 * 11 10 9 41 41 H 1.00905 * 111.00225 * 59.99872 * 16 14 12 42 42 H 1.00898 * 110.99884 * 183.94905 * 16 14 12 43 43 H 1.09005 * 109.46735 * 55.00048 * 17 14 12 44 44 H 1.08990 * 109.47573 * 295.00263 * 17 14 12 45 45 H 1.09004 * 109.46495 * 60.00301 * 18 17 14 46 46 H 1.09000 * 109.47518 * 300.00910 * 18 17 14 47 47 H 1.09003 * 109.46652 * 300.00613 * 19 18 17 48 48 H 1.08995 * 109.46795 * 60.00248 * 19 18 17 49 49 H 0.97003 * 120.00104 * 179.97438 * 23 22 20 50 50 H 1.08001 * 120.03077 * 179.74537 * 28 5 4 51 51 H 1.07993 * 119.96723 * 180.23411 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1983 0.0000 4 6 3.5780 1.2018 0.0005 5 6 4.2739 -0.0001 0.0016 6 7 5.6731 -0.0001 0.0016 7 6 6.3470 0.9556 0.6716 8 8 5.7435 1.8629 1.2043 9 6 7.8504 0.8970 0.7590 10 7 8.3394 2.0396 1.5345 11 6 8.6725 3.2954 0.8576 12 6 8.4829 1.9355 2.8705 13 8 8.2076 0.8957 3.4308 14 6 8.9854 3.1112 3.6683 15 1 8.5404 4.0286 3.2831 16 7 8.6127 2.9409 5.0789 17 6 10.5085 3.1943 3.5497 18 6 11.0069 4.4572 4.2551 19 6 12.5299 4.5407 4.1360 20 6 13.0207 5.7843 4.8314 21 1 12.3169 6.4485 5.3108 22 6 14.3686 6.0736 4.8565 23 7 15.2258 5.2646 4.2732 24 14 14.9770 7.6155 5.7179 25 1 15.2705 7.3048 7.1401 26 1 16.2127 8.0997 5.0518 27 1 13.9314 8.6676 5.6466 28 6 3.5780 -1.2019 -0.0032 29 6 2.1969 -1.1985 0.0013 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5140 33 1 1.6552 2.1327 -0.0004 34 1 4.1163 2.1381 0.0001 35 1 6.1581 -0.6878 -0.4807 36 1 8.2742 0.9304 -0.2446 37 1 8.1499 -0.0294 1.2492 38 1 9.7212 3.2811 0.5607 39 1 8.0459 3.4088 -0.0270 40 1 8.4983 4.1309 1.5357 41 1 9.0135 2.0966 5.4595 42 1 8.8819 3.7463 5.6238 43 1 10.7895 3.2312 2.4971 44 1 10.9577 2.3170 4.0149 45 1 10.7258 4.4202 5.3077 46 1 10.5577 5.3346 3.7898 47 1 12.9793 3.6633 4.6011 48 1 12.8105 4.5779 3.0834 49 1 16.1741 5.4683 4.2906 50 1 4.1163 -2.1382 -0.0065 51 1 1.6552 -2.1327 0.0014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594425045.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:05 Heat of formation + Delta-G solvation = -78.281004 kcal Electronic energy + Delta-G solvation = -29677.478176 eV Core-core repulsion = 25575.236877 eV Total energy + Delta-G solvation = -4102.241299 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.85946 -40.96782 -39.55298 -37.46125 -36.63968 -36.04320 -35.28489 -33.01586 -32.71935 -31.89263 -30.48036 -29.24261 -27.73981 -27.29234 -26.10801 -24.18615 -23.91549 -22.61928 -21.84746 -21.48504 -20.20687 -18.97692 -18.58845 -18.46252 -18.29725 -17.27005 -16.71390 -16.53441 -16.35125 -16.24461 -16.07293 -15.87692 -15.40645 -15.19742 -15.06351 -14.60367 -14.57283 -14.42479 -14.35068 -14.28250 -13.95091 -13.66625 -13.60445 -13.40088 -13.18813 -13.01233 -12.93351 -12.79810 -12.58133 -12.53709 -12.40756 -12.32916 -12.06178 -11.49262 -11.42525 -11.33250 -11.25913 -11.02327 -10.78594 -10.54808 -9.91505 -9.81890 -9.66055 -8.99663 -8.19548 -6.30302 0.25871 0.44647 1.35701 1.41086 1.41478 1.51938 1.52682 1.75668 2.21130 2.41370 2.82219 3.14031 3.43507 3.61924 3.64317 3.94328 3.94380 4.01095 4.01703 4.11263 4.13932 4.21723 4.29286 4.41762 4.42427 4.48017 4.53843 4.61189 4.70304 4.76315 4.84250 4.86284 4.92220 5.02252 5.07727 5.13550 5.19119 5.24058 5.28169 5.36529 5.39540 5.52821 5.52935 5.69113 5.74414 5.86045 5.98035 6.08723 6.23519 6.25259 6.36163 6.46414 6.87172 7.02615 7.09546 7.39250 8.91858 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.028160 B = 0.001623 C = 0.001606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.078942 B =17252.089758 C =17425.621533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.109 4.109 3 C -0.118 4.118 4 C -0.139 4.139 5 C 0.121 3.879 6 N -0.660 5.660 7 C 0.493 3.507 8 O -0.552 6.552 9 C 0.098 3.902 10 N -0.599 5.599 11 C 0.071 3.929 12 C 0.526 3.474 13 O -0.569 6.569 14 C 0.084 3.916 15 H 0.114 0.886 16 N -0.836 5.836 17 C -0.131 4.131 18 C -0.095 4.095 19 C 0.025 3.975 20 C -0.543 4.543 21 H 0.061 0.939 22 C 0.000 4.000 23 N -0.933 5.933 24 Si 0.962 3.038 25 H -0.275 1.275 26 H -0.283 1.283 27 H -0.262 1.262 28 C -0.141 4.141 29 C -0.107 4.107 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.131 0.869 34 H 0.117 0.883 35 H 0.429 0.571 36 H 0.159 0.841 37 H 0.118 0.882 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.075 0.925 41 H 0.346 0.654 42 H 0.357 0.643 43 H 0.077 0.923 44 H 0.050 0.950 45 H 0.052 0.948 46 H 0.062 0.938 47 H -0.014 1.014 48 H -0.004 1.004 49 H 0.263 0.737 50 H 0.150 0.850 51 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.515 -13.454 -15.775 32.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.110 4.110 3 C -0.136 4.136 4 C -0.160 4.160 5 C 0.027 3.973 6 N -0.308 5.308 7 C 0.281 3.719 8 O -0.429 6.429 9 C -0.029 4.029 10 N -0.331 5.331 11 C -0.071 4.071 12 C 0.315 3.685 13 O -0.448 6.448 14 C -0.031 4.031 15 H 0.132 0.868 16 N -0.368 5.368 17 C -0.171 4.171 18 C -0.132 4.132 19 C -0.012 4.012 20 C -0.581 4.581 21 H 0.079 0.921 22 C -0.197 4.197 23 N -0.573 5.573 24 Si 0.787 3.213 25 H -0.201 1.201 26 H -0.208 1.208 27 H -0.186 1.186 28 C -0.162 4.162 29 C -0.126 4.126 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.149 0.851 34 H 0.135 0.865 35 H 0.268 0.732 36 H 0.176 0.824 37 H 0.136 0.864 38 H 0.098 0.902 39 H 0.108 0.892 40 H 0.093 0.907 41 H 0.159 0.841 42 H 0.172 0.828 43 H 0.096 0.904 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.081 0.919 47 H 0.004 0.996 48 H 0.014 0.986 49 H 0.071 0.929 50 H 0.167 0.833 51 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -26.583 -13.379 -15.381 33.500 hybrid contribution 2.071 0.580 0.501 2.208 sum -24.513 -12.799 -14.880 31.402 Atomic orbital electron populations 1.20811 0.89319 1.03477 1.03140 1.20276 0.97655 0.92847 1.00216 1.21153 0.93321 0.98831 1.00325 1.21271 0.94981 0.97694 1.02018 1.17965 0.83097 0.94459 1.01822 1.43363 1.04444 1.31234 1.51720 1.21939 0.91905 0.81281 0.76798 1.90716 1.70574 1.35405 1.46175 1.21516 0.88422 0.92143 1.00784 1.47465 1.64511 1.14912 1.06238 1.22147 1.02150 0.84121 0.98642 1.20842 0.76008 0.89248 0.82407 1.90617 1.51787 1.31836 1.70520 1.21402 0.94351 0.96745 0.90557 0.86797 1.58685 1.67447 1.09052 1.01617 1.22208 0.93698 0.98788 1.02424 1.21433 0.96254 0.96155 0.99394 1.18990 0.92084 0.94940 0.95211 1.21725 0.92688 1.08742 1.34903 0.92068 1.25948 0.97384 1.00130 0.96280 1.70093 1.02655 1.39107 1.45440 0.85495 0.77893 0.79482 0.78465 1.20073 1.20831 1.18650 1.21206 0.95023 0.96688 1.03236 1.21205 0.93398 0.98596 0.99380 0.90101 0.90409 0.91431 0.85122 0.86548 0.73182 0.82377 0.86429 0.90203 0.89248 0.90663 0.84103 0.82768 0.90439 0.93135 0.92906 0.91925 0.99602 0.98573 0.92871 0.83262 0.83141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 10.01 71.23 0.71 -0.37 16 2 C -0.11 -1.70 5.88 -19.84 -0.12 -1.81 16 3 C -0.12 -2.26 9.69 22.25 0.22 -2.05 16 4 C -0.14 -3.19 8.70 22.39 0.19 -2.99 16 5 C 0.12 2.35 6.30 38.15 0.24 2.59 16 6 N -0.66 -10.38 5.34 -303.50 -1.62 -12.00 16 7 C 0.49 10.64 7.74 87.66 0.68 11.32 16 8 O -0.55 -17.15 13.87 -3.07 -0.04 -17.19 16 9 C 0.10 1.64 5.89 85.63 0.50 2.14 16 10 N -0.60 -13.64 2.36 -851.15 -2.01 -15.65 16 11 C 0.07 1.24 9.56 127.77 1.22 2.46 16 12 C 0.53 16.02 6.92 87.66 0.61 16.63 16 13 O -0.57 -21.05 15.83 -3.01 -0.05 -21.10 16 14 C 0.08 2.45 2.47 44.17 0.11 2.56 16 15 H 0.11 3.04 6.31 -2.39 -0.02 3.02 16 16 N -0.84 -25.27 8.94 -171.80 -1.54 -26.80 16 17 C -0.13 -4.16 4.77 30.60 0.15 -4.01 16 18 C -0.09 -3.58 4.92 30.59 0.15 -3.43 16 19 C 0.02 1.26 4.97 29.85 0.15 1.41 16 20 C -0.54 -30.16 9.11 25.60 0.23 -29.93 16 21 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 22 C 0.00 0.02 5.46 84.65 0.46 0.48 16 23 N -0.93 -56.05 13.29 21.45 0.28 -55.76 16 24 Si 0.96 43.70 29.54 68.60 2.03 45.73 16 25 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 26 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 27 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 28 C -0.14 -2.11 9.97 22.39 0.22 -1.89 16 29 C -0.11 -1.49 9.69 22.25 0.22 -1.27 16 30 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.08 0.58 8.08 -2.38 -0.02 0.56 16 32 H 0.07 0.64 8.08 -2.39 -0.02 0.62 16 33 H 0.13 2.14 8.06 -2.91 -0.02 2.12 16 34 H 0.12 3.10 6.22 -2.91 -0.02 3.09 16 35 H 0.43 3.07 8.82 -92.71 -0.82 2.25 16 36 H 0.16 1.10 8.07 -2.39 -0.02 1.08 16 37 H 0.12 2.02 7.42 -2.39 -0.02 2.01 16 38 H 0.08 1.20 7.65 -2.39 -0.02 1.18 16 39 H 0.09 1.22 8.07 -2.39 -0.02 1.20 16 40 H 0.07 1.41 5.94 -2.38 -0.01 1.39 16 41 H 0.35 10.78 8.58 -89.69 -0.77 10.01 16 42 H 0.36 9.88 7.55 -89.70 -0.68 9.20 16 43 H 0.08 2.28 6.94 -2.38 -0.02 2.27 16 44 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.05 1.94 6.87 -2.38 -0.02 1.93 16 46 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 47 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 48 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 49 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 50 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 51 H 0.15 1.23 8.06 -2.91 -0.02 1.21 16 Total: -1.00 -81.36 418.09 1.71 -79.65 By element: Atomic # 1 Polarization: 32.57 SS G_CDS: -1.30 Total: 31.27 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: 5.95 Total: -8.16 kcal Atomic # 7 Polarization: -105.33 SS G_CDS: -4.88 Total: -110.21 kcal Atomic # 8 Polarization: -38.20 SS G_CDS: -0.09 Total: -38.29 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -81.36 1.71 -79.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594425045.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.372 kcal (2) G-P(sol) polarization free energy of solvation -81.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds