Wall clock time and date at job start Wed Apr 1 2020 05:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38787 * 120.07376 * 2 1 4 4 N 1.39674 * 120.03765 * 0.02562 * 3 2 1 5 5 C 1.38952 * 119.92518 * 180.27574 * 3 2 1 6 6 C 1.38184 * 120.07522 * 359.72280 * 5 3 2 7 7 C 1.38121 * 120.15274 * 0.02562 * 6 5 3 8 8 C 1.38771 * 120.07387 * 179.74631 * 2 1 3 9 9 N 1.39721 * 120.03864 * 0.02562 * 8 2 1 10 10 C 1.34781 * 120.00042 * 145.91326 * 9 8 2 11 11 O 1.21373 * 119.99841 * 4.84048 * 10 9 8 12 12 C 1.49347 * 120.00030 * 184.84122 * 10 9 8 13 13 O 1.21363 * 120.00287 * 0.25413 * 12 10 9 14 14 N 1.34779 * 120.00077 * 180.24942 * 12 10 9 15 15 C 1.46506 * 119.99936 * 354.62478 * 14 12 10 16 16 C 1.50706 * 109.46912 * 83.66298 * 15 14 12 17 17 H 1.07999 * 119.99873 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99850 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99755 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99936 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47323 * 60.00061 * 20 18 16 22 22 H 1.48506 * 109.47085 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47061 * 299.99870 * 20 18 16 24 24 C 1.46501 * 120.00347 * 174.62501 * 14 12 10 25 25 C 1.52995 * 109.47032 * 94.81906 * 24 14 12 26 26 C 1.53000 * 109.47188 * 180.02562 * 25 24 14 27 27 C 1.52996 * 109.47606 * 175.00360 * 26 25 24 28 28 C 1.53008 * 109.47070 * 295.00097 * 26 25 24 29 29 H 1.09004 * 109.47135 * 270.25136 * 1 2 3 30 30 H 1.08996 * 109.47114 * 30.25439 * 1 2 3 31 31 H 1.09003 * 109.46904 * 150.25449 * 1 2 3 32 32 H 0.97003 * 120.00408 * 180.24984 * 4 3 2 33 33 H 0.97005 * 120.00372 * 0.26415 * 4 3 2 34 34 H 1.08001 * 119.96013 * 179.69893 * 5 3 2 35 35 H 1.08006 * 119.92417 * 179.97438 * 6 5 3 36 36 H 1.07993 * 119.96673 * 180.02562 * 7 6 5 37 37 H 0.96997 * 120.00076 * 325.64267 * 9 8 2 38 38 H 1.08998 * 109.47143 * 203.66723 * 15 14 12 39 39 H 1.08996 * 109.46730 * 323.67114 * 15 14 12 40 40 H 0.97001 * 119.99788 * 179.97438 * 19 18 16 41 41 H 1.08995 * 109.47256 * 214.82072 * 24 14 12 42 42 H 1.09003 * 109.46948 * 334.82263 * 24 14 12 43 43 H 1.09000 * 109.47696 * 300.00230 * 25 24 14 44 44 H 1.09003 * 109.46962 * 60.00366 * 25 24 14 45 45 H 1.09002 * 109.47215 * 54.99769 * 26 25 24 46 46 H 1.09002 * 109.47316 * 59.99471 * 27 26 25 47 47 H 1.08994 * 109.47673 * 180.02562 * 27 26 25 48 48 H 1.09001 * 109.46721 * 299.99861 * 27 26 25 49 49 H 1.09008 * 109.46679 * 59.99687 * 28 26 25 50 50 H 1.08993 * 109.47220 * 179.97438 * 28 26 25 51 51 H 1.08998 * 109.47134 * 300.00305 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2025 1.2010 0.0000 4 7 1.5065 2.4120 0.0005 5 6 3.5921 1.1974 -0.0058 6 6 4.2815 -0.0001 -0.0058 7 6 3.5925 -1.1973 -0.0005 8 6 2.2025 -1.2009 0.0053 9 7 1.5062 -2.4123 0.0101 10 6 2.0088 -3.4810 -0.6394 11 8 3.1063 -3.4176 -1.1538 12 6 1.2153 -4.7432 -0.7260 13 8 0.1159 -4.8052 -0.2156 14 7 1.7199 -5.8135 -1.3712 15 6 2.9931 -5.7038 -2.0876 16 6 4.1323 -5.8953 -1.1197 17 1 3.9282 -6.0807 -0.0755 18 6 5.4349 -5.8339 -1.5673 19 7 5.6833 -5.6076 -2.8388 20 14 6.8469 -6.0720 -0.3677 21 1 6.7450 -7.4156 0.2564 22 1 8.1375 -5.9594 -1.0936 23 1 6.7807 -5.0297 0.6879 24 6 0.9954 -7.0868 -1.3561 25 6 0.1261 -7.1937 -2.6106 26 6 -0.6311 -8.5231 -2.5945 27 6 -1.5931 -8.5766 -3.7830 28 6 0.3662 -9.6793 -2.6933 29 1 -0.3634 0.0045 1.0277 30 1 -0.3633 0.8877 -0.5178 31 1 -0.3633 -0.8923 -0.5099 32 1 1.9931 3.2512 -0.0031 33 1 0.5365 2.4140 0.0048 34 1 4.1338 2.1317 -0.0107 35 1 5.3615 -0.0001 -0.0107 36 1 4.1343 -2.1314 -0.0001 37 1 0.6632 -2.4852 0.4842 38 1 3.0415 -6.4694 -2.8619 39 1 3.0681 -4.7179 -2.5463 40 1 6.5998 -5.5641 -3.1536 41 1 1.7088 -7.9106 -1.3371 42 1 0.3621 -7.1339 -0.4702 43 1 -0.5873 -6.3699 -2.6297 44 1 0.7594 -7.1466 -3.4965 45 1 -1.1956 -8.6086 -1.6660 46 1 -1.0286 -8.4911 -4.7116 47 1 -2.1328 -9.5234 -3.7714 48 1 -2.3036 -7.7529 -3.7127 49 1 1.0516 -9.6412 -1.8465 50 1 -0.1732 -10.6264 -2.6814 51 1 0.9307 -9.5939 -3.6218 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599880313.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:30 Heat of formation + Delta-G solvation = -62.252732 kcal Electronic energy + Delta-G solvation = -31409.314281 eV Core-core repulsion = 27307.768020 eV Total energy + Delta-G solvation = -4101.546261 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.09174 -40.69768 -39.33048 -37.99609 -36.85450 -35.89236 -34.95968 -34.44958 -32.48085 -30.85967 -29.52654 -28.89172 -27.97526 -27.66256 -26.27550 -25.02083 -24.13334 -22.45682 -22.14209 -20.87229 -20.68346 -19.13131 -18.57000 -18.43970 -17.76061 -17.63613 -16.86355 -16.72764 -16.41118 -16.22690 -15.93689 -15.71966 -15.43163 -15.21454 -14.86828 -14.67165 -14.42730 -14.30490 -14.21476 -14.15926 -13.75526 -13.62952 -13.32439 -13.16435 -13.12657 -12.96036 -12.74856 -12.68503 -12.39565 -12.33670 -12.25786 -12.16577 -11.96299 -11.85324 -11.81876 -11.62547 -11.53159 -11.40107 -10.89231 -10.60956 -10.09348 -9.61278 -9.11135 -8.32351 -8.12671 -6.20650 0.15637 0.63529 0.78692 1.38007 1.41167 1.44925 1.48274 2.25107 2.40968 2.61867 2.95086 3.09122 3.21383 3.43558 3.91206 3.95763 3.97886 4.07425 4.09725 4.24627 4.28140 4.53929 4.55748 4.63490 4.65803 4.75073 4.75522 4.79898 4.82465 4.83420 4.87515 4.92758 5.05563 5.13208 5.14458 5.20980 5.28031 5.32730 5.34871 5.41217 5.48272 5.49509 5.53534 5.57303 5.74075 5.76842 6.01951 6.11514 6.18894 6.32964 6.62529 6.79644 6.85070 7.07356 7.11956 7.44835 8.95585 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008606 B = 0.003784 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3252.577956 B = 7398.124037 C =10108.520910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.196 4.196 3 C 0.233 3.767 4 N -0.860 5.860 5 C -0.209 4.209 6 C -0.068 4.068 7 C -0.204 4.204 8 C 0.175 3.825 9 N -0.643 5.643 10 C 0.483 3.517 11 O -0.465 6.465 12 C 0.505 3.495 13 O -0.558 6.558 14 N -0.563 5.563 15 C 0.252 3.748 16 C -0.516 4.516 17 H 0.043 0.957 18 C 0.025 3.975 19 N -0.921 5.921 20 Si 0.948 3.052 21 H -0.267 1.267 22 H -0.281 1.281 23 H -0.281 1.281 24 C 0.112 3.888 25 C -0.119 4.119 26 C -0.088 4.088 27 C -0.142 4.142 28 C -0.150 4.150 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.056 0.944 32 H 0.409 0.591 33 H 0.406 0.594 34 H 0.147 0.853 35 H 0.131 0.869 36 H 0.103 0.897 37 H 0.423 0.577 38 H 0.020 0.980 39 H 0.039 0.961 40 H 0.263 0.737 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.055 0.945 44 H 0.054 0.946 45 H 0.077 0.923 46 H 0.050 0.950 47 H 0.070 0.930 48 H 0.053 0.947 49 H 0.050 0.950 50 H 0.071 0.929 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.899 9.084 3.942 16.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.204 4.204 3 C 0.126 3.874 4 N -0.402 5.402 5 C -0.232 4.232 6 C -0.087 4.087 7 C -0.226 4.226 8 C 0.081 3.919 9 N -0.291 5.291 10 C 0.265 3.735 11 O -0.335 6.335 12 C 0.288 3.712 13 O -0.440 6.440 14 N -0.293 5.293 15 C 0.131 3.869 16 C -0.554 4.554 17 H 0.061 0.939 18 C -0.175 4.175 19 N -0.560 5.560 20 Si 0.774 3.226 21 H -0.192 1.192 22 H -0.206 1.206 23 H -0.207 1.207 24 C -0.009 4.009 25 C -0.157 4.157 26 C -0.107 4.107 27 C -0.199 4.199 28 C -0.207 4.207 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.075 0.925 32 H 0.240 0.760 33 H 0.237 0.763 34 H 0.165 0.835 35 H 0.149 0.851 36 H 0.121 0.879 37 H 0.262 0.738 38 H 0.038 0.962 39 H 0.057 0.943 40 H 0.072 0.928 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.096 0.904 46 H 0.070 0.930 47 H 0.089 0.911 48 H 0.073 0.927 49 H 0.069 0.931 50 H 0.090 0.910 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -12.515 8.979 3.636 15.826 hybrid contribution 0.884 -0.071 0.559 1.048 sum -11.631 8.908 4.195 15.239 Atomic orbital electron populations 1.20576 0.89113 1.03199 1.03027 1.19244 0.97160 0.89901 1.14064 1.17298 0.91039 0.86375 0.92672 1.42389 1.09452 1.04067 1.84328 1.20782 0.92299 0.98649 1.11435 1.20909 1.00187 0.91340 0.96311 1.21086 0.93331 0.99313 1.08918 1.17471 0.90879 0.84408 0.99190 1.43025 1.25839 1.08356 1.51907 1.20487 0.86987 0.85427 0.80628 1.90983 1.18803 1.81534 1.42150 1.19890 0.85862 0.85249 0.80245 1.90625 1.20243 1.84005 1.49095 1.48245 1.23127 1.09885 1.48030 1.19400 0.78276 0.97726 0.91457 1.21291 0.91486 1.48411 0.94259 0.93852 1.25478 1.00703 0.94835 0.96461 1.70010 1.20599 1.50214 1.15226 0.85776 0.78953 0.78697 0.79206 1.19159 1.20578 1.20679 1.21763 0.95453 0.84110 0.99615 1.21909 0.98137 0.98626 0.97037 1.21033 0.96481 0.93134 1.00070 1.21796 0.98637 1.02295 0.97208 1.21906 0.98951 0.98141 1.01677 0.90002 0.89775 0.92498 0.76043 0.76301 0.83524 0.85145 0.87880 0.73789 0.96190 0.94315 0.92836 0.89900 0.90004 0.92613 0.92763 0.90426 0.93041 0.91103 0.92743 0.93061 0.91049 0.93249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.99 9.02 71.24 0.64 -1.35 16 2 C -0.20 -5.23 5.91 -19.60 -0.12 -5.34 16 3 C 0.23 5.35 6.73 38.19 0.26 5.60 16 4 N -0.86 -11.86 8.99 -51.42 -0.46 -12.32 16 5 C -0.21 -5.12 9.89 22.43 0.22 -4.89 16 6 C -0.07 -2.12 10.03 22.23 0.22 -1.90 16 7 C -0.20 -7.82 8.70 22.43 0.20 -7.63 16 8 C 0.18 6.04 6.30 38.20 0.24 6.28 16 9 N -0.64 -22.84 4.74 -304.90 -1.44 -24.28 16 10 C 0.48 21.10 7.57 87.24 0.66 21.76 16 11 O -0.46 -23.84 9.46 -3.32 -0.03 -23.87 16 12 C 0.51 21.83 7.67 87.24 0.67 22.50 16 13 O -0.56 -23.15 16.04 -3.29 -0.05 -23.20 16 14 N -0.56 -24.81 2.47 -827.84 -2.05 -26.86 16 15 C 0.25 13.09 4.78 85.63 0.41 13.50 16 16 C -0.52 -28.96 7.79 25.60 0.20 -28.76 16 17 H 0.04 2.46 7.81 -2.91 -0.02 2.44 16 18 C 0.02 1.41 5.46 84.65 0.46 1.87 16 19 N -0.92 -54.94 13.29 21.45 0.28 -54.65 16 20 Si 0.95 45.37 29.54 68.60 2.03 47.40 16 21 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 22 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 23 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 24 C 0.11 4.05 5.15 86.38 0.44 4.50 16 25 C -0.12 -3.68 5.01 30.59 0.15 -3.52 16 26 C -0.09 -2.11 2.92 -10.79 -0.03 -2.14 16 27 C -0.14 -2.90 9.19 71.98 0.66 -2.23 16 28 C -0.15 -3.47 8.95 71.98 0.64 -2.82 16 29 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 30 H 0.08 1.21 6.56 -2.39 -0.02 1.20 16 31 H 0.06 1.24 7.16 -2.39 -0.02 1.22 16 32 H 0.41 3.81 8.84 -92.71 -0.82 2.99 16 33 H 0.41 4.19 6.83 -92.70 -0.63 3.56 16 34 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 35 H 0.13 3.66 8.06 -2.91 -0.02 3.64 16 36 H 0.10 4.79 6.11 -2.91 -0.02 4.77 16 37 H 0.42 12.88 7.31 -92.71 -0.68 12.20 16 38 H 0.02 1.08 8.02 -2.39 -0.02 1.06 16 39 H 0.04 2.25 5.84 -2.39 -0.01 2.23 16 40 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 41 H 0.08 3.00 6.53 -2.39 -0.02 2.98 16 42 H 0.08 2.84 7.36 -2.39 -0.02 2.82 16 43 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 47 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 49 H 0.05 1.27 6.57 -2.38 -0.02 1.26 16 50 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 51 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -70.45 409.58 3.05 -67.40 By element: Atomic # 1 Polarization: 36.11 SS G_CDS: -1.16 Total: 34.95 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: 5.94 Total: 15.42 kcal Atomic # 7 Polarization: -114.43 SS G_CDS: -3.67 Total: -118.11 kcal Atomic # 8 Polarization: -46.98 SS G_CDS: -0.08 Total: -47.07 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -70.45 3.05 -67.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599880313.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.148 kcal (2) G-P(sol) polarization free energy of solvation -70.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds