Wall clock time and date at job start Wed Apr 1 2020 05:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38294 * 119.97575 * 2 1 4 4 C 1.38236 * 120.11338 * 179.72322 * 3 2 1 5 5 C 1.38169 * 120.05841 * 0.54841 * 4 3 2 6 6 C 1.38715 * 119.93990 * 359.72491 * 5 4 3 7 7 O 1.35899 * 120.05389 * 179.97438 * 6 5 4 8 8 C 1.42900 * 116.99967 * 0.02562 * 7 6 5 9 9 C 1.53002 * 109.47124 * 180.02562 * 8 7 6 10 10 N 1.46503 * 109.47236 * 64.99744 * 9 8 7 11 11 C 1.34776 * 119.99914 * 180.02562 * 10 9 8 12 12 O 1.21585 * 120.00079 * 354.91826 * 11 10 9 13 13 N 1.34771 * 120.00092 * 174.91965 * 11 10 9 14 14 C 1.47076 * 120.88268 * 184.72005 * 13 11 10 15 15 C 1.53695 * 108.28005 * 128.75518 * 14 13 11 16 16 N 1.46901 * 109.25883 * 54.07821 * 15 14 13 17 17 C 1.46907 * 110.99861 * 172.61093 * 16 15 14 18 18 C 1.50698 * 109.46923 * 294.30002 * 17 16 15 19 19 H 1.08003 * 120.00243 * 0.02562 * 18 17 16 20 20 C 1.37883 * 119.99884 * 180.02562 * 18 17 16 21 21 N 1.31511 * 119.99718 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00076 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47237 * 89.99643 * 22 20 18 24 24 H 1.48500 * 109.46922 * 210.00036 * 22 20 18 25 25 H 1.48505 * 109.46815 * 329.99501 * 22 20 18 26 26 C 1.46893 * 111.26851 * 296.75679 * 16 15 14 27 27 C 1.47081 * 120.88224 * 4.99202 * 13 11 10 28 28 C 1.38127 * 119.97226 * 180.26842 * 2 1 3 29 29 H 1.08992 * 109.47620 * 269.73037 * 1 2 3 30 30 H 1.09004 * 109.47060 * 29.72947 * 1 2 3 31 31 H 1.09002 * 109.47173 * 149.72811 * 1 2 3 32 32 H 1.08006 * 119.93704 * 359.97438 * 3 2 1 33 33 H 1.08001 * 119.97597 * 180.25220 * 4 3 2 34 34 H 1.08000 * 120.03005 * 179.75307 * 5 4 3 35 35 H 1.09006 * 109.47101 * 299.99617 * 8 7 6 36 36 H 1.08995 * 109.47497 * 59.99712 * 8 7 6 37 37 H 1.08995 * 109.47300 * 184.99731 * 9 8 7 38 38 H 1.08997 * 109.47047 * 304.99820 * 9 8 7 39 39 H 0.97002 * 119.99784 * 0.02562 * 10 9 8 40 40 H 1.09010 * 109.62687 * 248.51938 * 14 13 11 41 41 H 1.08999 * 109.62874 * 9.09909 * 14 13 11 42 42 H 1.09001 * 109.64569 * 294.07461 * 15 14 13 43 43 H 1.09002 * 109.42476 * 173.94584 * 15 14 13 44 44 H 1.08998 * 109.47079 * 54.30448 * 17 16 15 45 45 H 1.09002 * 109.46913 * 174.30358 * 17 16 15 46 46 H 0.97003 * 119.99992 * 180.02562 * 21 20 18 47 47 H 1.09000 * 109.49755 * 303.14448 * 26 16 15 48 48 H 1.09005 * 109.49551 * 183.05988 * 26 16 15 49 49 H 1.09005 * 109.62787 * 350.89798 * 27 13 11 50 50 H 1.08994 * 109.63219 * 111.47842 * 27 13 11 51 51 H 1.07996 * 120.02626 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1979 1.1980 0.0000 4 6 3.5802 1.2013 0.0058 5 6 4.2752 0.0071 0.0001 6 6 3.5845 -1.1959 -0.0056 7 8 4.2657 -2.3718 -0.0117 8 6 5.6927 -2.2949 -0.0113 9 6 6.2795 -3.7078 -0.0192 10 7 5.9277 -4.3757 -1.2748 11 6 6.3394 -5.6383 -1.5049 12 8 7.0790 -6.1903 -0.7133 13 7 5.9313 -6.2889 -2.6123 14 6 6.2840 -7.6997 -2.8321 15 6 4.9966 -8.4732 -3.1586 16 7 4.3122 -7.8221 -4.2836 17 6 3.1712 -8.6258 -4.7420 18 6 3.6715 -9.9244 -5.3202 19 1 4.7311 -10.1322 -5.3443 20 6 2.7765 -10.8474 -5.8184 21 7 1.4863 -10.5947 -5.7886 22 14 3.3966 -12.4575 -6.5345 23 1 3.4723 -13.4802 -5.4606 24 1 2.4640 -12.9198 -7.5936 25 1 4.7464 -12.2521 -7.1186 26 6 3.8896 -6.4595 -3.9336 27 6 5.1265 -5.6052 -3.6361 28 6 2.1970 -1.1965 -0.0056 29 1 -0.3634 -0.0048 1.0275 30 1 -0.3633 0.8924 -0.5096 31 1 -0.3633 -0.8875 -0.5181 32 1 1.6564 2.1325 -0.0004 33 1 4.1176 2.1381 0.0099 34 1 5.3552 0.0103 0.0006 35 1 6.0278 -1.7577 -0.8986 36 1 6.0279 -1.7669 0.8814 37 1 7.3643 -3.6512 0.0706 38 1 5.8746 -4.2742 0.8194 39 1 5.3984 -3.9092 -1.9405 40 1 6.9825 -7.7771 -3.6654 41 1 6.7393 -8.1082 -1.9299 42 1 4.3411 -8.4780 -2.2877 43 1 5.2486 -9.4983 -3.4302 44 1 2.5112 -8.8334 -3.8997 45 1 2.6227 -8.0753 -5.5063 46 1 0.8566 -11.2441 -6.1388 47 1 3.2495 -6.4923 -3.0520 48 1 3.3388 -6.0240 -4.7675 49 1 4.8162 -4.6281 -3.2657 50 1 5.7157 -5.4850 -4.5452 51 1 1.6570 -2.1318 -0.0096 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601257191.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:47:43 Heat of formation + Delta-G solvation = -27.672248 kcal Electronic energy + Delta-G solvation = -30011.359260 eV Core-core repulsion = 25911.312521 eV Total energy + Delta-G solvation = -4100.046739 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.62510 -40.11607 -38.21434 -37.56636 -34.97876 -34.37247 -32.85846 -32.39909 -31.23631 -30.54442 -29.35540 -27.94628 -27.29282 -25.46456 -23.84596 -22.99492 -22.86897 -22.13288 -21.20838 -20.71604 -19.35062 -18.24517 -17.97058 -16.80334 -16.48854 -16.33227 -16.21891 -15.73808 -15.45359 -14.89722 -14.68519 -14.50818 -14.32680 -14.12653 -13.95185 -13.84000 -13.68890 -13.55307 -13.52845 -13.32078 -12.64471 -12.46116 -12.44492 -12.19689 -12.07135 -11.93952 -11.86920 -11.30720 -11.27131 -11.15846 -11.10330 -10.81636 -10.73470 -10.60935 -10.49906 -10.00163 -9.84171 -9.26921 -9.18817 -9.14200 -8.53548 -8.47756 -8.31343 -7.31022 -6.05302 -4.06977 0.95745 1.10584 2.66556 2.78313 3.31072 3.31461 3.37481 3.39907 3.41635 3.90734 4.28469 4.40119 4.43504 4.54795 4.60379 4.67503 4.78123 4.83999 4.89221 4.97034 5.13545 5.23190 5.26166 5.28098 5.29762 5.36931 5.39001 5.43573 5.52789 5.59656 5.67464 5.73597 5.84697 5.94589 5.95808 6.05645 6.06889 6.22252 6.24507 6.36829 6.42784 6.44209 6.57707 6.69341 7.05322 7.06043 7.23311 7.29822 7.75409 7.99718 8.02760 8.13716 8.48891 8.67197 9.00361 9.57526 11.05546 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012626 B = 0.002079 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.144758 B =13467.598697 C =15296.851477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.047 4.047 3 C -0.161 4.161 4 C -0.077 4.077 5 C -0.217 4.217 6 C 0.135 3.865 7 O -0.310 6.310 8 C 0.047 3.953 9 C 0.143 3.857 10 N -0.748 5.748 11 C 0.708 3.292 12 O -0.598 6.598 13 N -0.624 5.624 14 C 0.133 3.867 15 C 0.050 3.950 16 N -0.535 5.535 17 C 0.194 3.806 18 C -0.509 4.509 19 H 0.064 0.936 20 C 0.055 3.945 21 N -0.898 5.898 22 Si 0.898 3.102 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.272 1.272 26 C 0.041 3.959 27 C 0.119 3.881 28 C -0.152 4.152 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.122 0.878 33 H 0.124 0.876 34 H 0.127 0.873 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.398 0.602 40 H 0.070 0.930 41 H 0.088 0.912 42 H 0.025 0.975 43 H 0.097 0.903 44 H -0.009 1.009 45 H 0.031 0.969 46 H 0.261 0.739 47 H 0.027 0.973 48 H 0.080 0.920 49 H 0.069 0.931 50 H 0.075 0.925 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.088 25.515 12.176 28.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.047 4.047 3 C -0.179 4.179 4 C -0.095 4.095 5 C -0.236 4.236 6 C 0.090 3.910 7 O -0.224 6.224 8 C -0.028 4.028 9 C 0.018 3.982 10 N -0.408 5.408 11 C 0.410 3.590 12 O -0.477 6.477 13 N -0.361 5.361 14 C 0.010 3.990 15 C -0.079 4.079 16 N -0.260 5.260 17 C 0.069 3.931 18 C -0.547 4.547 19 H 0.082 0.918 20 C -0.146 4.146 21 N -0.538 5.538 22 Si 0.726 3.274 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.197 1.197 26 C -0.089 4.089 27 C -0.005 4.005 28 C -0.171 4.171 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.140 0.860 33 H 0.142 0.858 34 H 0.145 0.855 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.107 0.893 38 H 0.095 0.905 39 H 0.235 0.765 40 H 0.089 0.911 41 H 0.106 0.894 42 H 0.043 0.957 43 H 0.115 0.885 44 H 0.009 0.991 45 H 0.049 0.951 46 H 0.071 0.929 47 H 0.045 0.955 48 H 0.099 0.901 49 H 0.087 0.913 50 H 0.094 0.906 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.706 24.851 12.328 28.137 hybrid contribution -0.553 -0.464 -0.124 0.732 sum 4.154 24.387 12.205 27.585 Atomic orbital electron populations 1.20835 0.90642 1.03227 1.02666 1.19743 0.96177 0.92231 0.96526 1.20956 0.94179 0.97582 1.05203 1.20918 0.94185 0.97381 0.97046 1.21241 1.00209 0.92278 1.09827 1.18988 0.91763 0.84598 0.95689 1.86156 1.19669 1.28077 1.88467 1.23144 0.78879 0.98211 1.02587 1.21187 0.99809 0.90001 0.87157 1.45177 1.59816 1.14613 1.21178 1.15788 0.80438 0.80944 0.81827 1.90886 1.40812 1.67766 1.48218 1.47400 1.55615 1.12964 1.20134 1.21838 0.97367 0.78169 1.01577 1.22456 0.93932 0.99227 0.92258 1.62082 1.30147 1.01065 1.32713 1.19723 0.86525 0.92280 0.94564 1.21145 0.93558 1.00770 1.39261 0.91755 1.24997 0.94808 0.98702 0.96117 1.69957 1.01179 1.35863 1.46771 0.86489 0.78704 0.83401 0.78781 1.20716 1.21284 1.19725 1.22373 0.94765 0.92142 0.99602 1.21766 0.92920 0.94460 0.91344 1.20362 0.90966 0.98832 1.06916 0.90814 0.91233 0.91064 0.85987 0.85833 0.85539 0.91159 0.90156 0.89342 0.90540 0.76506 0.91140 0.89367 0.95718 0.88484 0.99132 0.95078 0.92896 0.95480 0.90148 0.91296 0.90641 0.85078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.71 10.01 36.00 0.36 -0.35 16 2 C -0.05 -0.38 5.88 -104.65 -0.62 -1.00 16 3 C -0.16 -1.20 9.70 -39.56 -0.38 -1.59 16 4 C -0.08 -0.56 10.04 -39.61 -0.40 -0.96 16 5 C -0.22 -1.72 9.04 -39.43 -0.36 -2.08 16 6 C 0.13 1.29 6.69 -39.21 -0.26 1.03 16 7 O -0.31 -3.07 10.08 -19.42 -0.20 -3.27 16 8 C 0.05 0.34 4.87 37.16 0.18 0.52 16 9 C 0.14 1.36 6.07 -4.04 -0.02 1.33 16 10 N -0.75 -8.85 5.42 -65.23 -0.35 -9.20 16 11 C 0.71 11.18 8.31 -86.92 -0.72 10.45 16 12 O -0.60 -11.35 15.83 5.29 0.08 -11.26 16 13 N -0.62 -9.80 3.00 -177.91 -0.53 -10.33 16 14 C 0.13 2.25 6.61 -3.37 -0.02 2.23 16 15 C 0.05 0.99 5.47 -3.46 -0.02 0.97 16 16 N -0.53 -11.19 4.62 -235.46 -1.09 -12.28 16 17 C 0.19 4.95 4.72 -4.97 -0.02 4.93 16 18 C -0.51 -14.01 8.41 -34.44 -0.29 -14.30 16 19 H 0.06 1.74 7.13 -52.48 -0.37 1.37 16 20 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 21 N -0.90 -26.46 13.29 55.43 0.74 -25.73 16 22 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 26 C 0.04 0.70 5.62 -3.70 -0.02 0.68 16 27 C 0.12 1.64 6.59 -3.60 -0.02 1.61 16 28 C -0.15 -1.45 9.64 -39.43 -0.38 -1.83 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 31 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 32 H 0.12 0.67 8.06 -52.48 -0.42 0.25 16 33 H 0.12 0.62 8.06 -52.49 -0.42 0.19 16 34 H 0.13 0.75 6.30 -52.49 -0.33 0.42 16 35 H 0.07 0.41 7.66 -51.93 -0.40 0.02 16 36 H 0.08 0.43 7.66 -51.93 -0.40 0.03 16 37 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.40 4.09 5.97 -40.82 -0.24 3.85 16 40 H 0.07 1.15 8.14 -51.92 -0.42 0.73 16 41 H 0.09 1.50 7.09 -51.93 -0.37 1.13 16 42 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.10 2.01 6.67 -51.93 -0.35 1.66 16 44 H -0.01 -0.25 8.12 -51.93 -0.42 -0.68 16 45 H 0.03 0.84 7.97 -51.93 -0.41 0.43 16 46 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 47 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 48 H 0.08 1.31 7.99 -51.93 -0.41 0.90 16 49 H 0.07 0.75 5.63 -51.93 -0.29 0.46 16 50 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 51 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 410.06 15.07 6.18 6.18 Total: -1.00 -33.60 410.06 -11.49 -45.10 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -8.20 Total: 1.27 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: -3.10 Total: 3.10 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: -1.24 Total: -57.54 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -0.11 Total: -14.53 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.60 -11.49 -45.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601257191.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.425 kcal (2) G-P(sol) polarization free energy of solvation -33.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds