Wall clock time and date at job start Wed Apr 1 2020 05:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38294 * 119.97575 * 2 1 4 4 C 1.38236 * 120.11338 * 179.72322 * 3 2 1 5 5 C 1.38169 * 120.05841 * 0.54841 * 4 3 2 6 6 C 1.38715 * 119.93990 * 359.72491 * 5 4 3 7 7 O 1.35899 * 120.05389 * 179.97438 * 6 5 4 8 8 C 1.42900 * 116.99967 * 0.02562 * 7 6 5 9 9 C 1.53002 * 109.47124 * 180.02562 * 8 7 6 10 10 N 1.46503 * 109.47236 * 64.99744 * 9 8 7 11 11 C 1.34776 * 119.99914 * 180.02562 * 10 9 8 12 12 O 1.21585 * 120.00079 * 354.91826 * 11 10 9 13 13 N 1.34771 * 120.00092 * 174.91965 * 11 10 9 14 14 C 1.47076 * 120.88268 * 184.72005 * 13 11 10 15 15 C 1.53695 * 108.28005 * 128.75518 * 14 13 11 16 16 N 1.46901 * 109.25883 * 54.07821 * 15 14 13 17 17 C 1.46907 * 110.99861 * 172.61093 * 16 15 14 18 18 C 1.50698 * 109.46923 * 294.30002 * 17 16 15 19 19 H 1.08003 * 120.00243 * 0.02562 * 18 17 16 20 20 C 1.37883 * 119.99884 * 180.02562 * 18 17 16 21 21 N 1.31511 * 119.99718 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00076 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47237 * 89.99643 * 22 20 18 24 24 H 1.48500 * 109.46922 * 210.00036 * 22 20 18 25 25 H 1.48505 * 109.46815 * 329.99501 * 22 20 18 26 26 C 1.46893 * 111.26851 * 296.75679 * 16 15 14 27 27 C 1.47081 * 120.88224 * 4.99202 * 13 11 10 28 28 C 1.38127 * 119.97226 * 180.26842 * 2 1 3 29 29 H 1.08992 * 109.47620 * 269.73037 * 1 2 3 30 30 H 1.09004 * 109.47060 * 29.72947 * 1 2 3 31 31 H 1.09002 * 109.47173 * 149.72811 * 1 2 3 32 32 H 1.08006 * 119.93704 * 359.97438 * 3 2 1 33 33 H 1.08001 * 119.97597 * 180.25220 * 4 3 2 34 34 H 1.08000 * 120.03005 * 179.75307 * 5 4 3 35 35 H 1.09006 * 109.47101 * 299.99617 * 8 7 6 36 36 H 1.08995 * 109.47497 * 59.99712 * 8 7 6 37 37 H 1.08995 * 109.47300 * 184.99731 * 9 8 7 38 38 H 1.08997 * 109.47047 * 304.99820 * 9 8 7 39 39 H 0.97002 * 119.99784 * 0.02562 * 10 9 8 40 40 H 1.09010 * 109.62687 * 248.51938 * 14 13 11 41 41 H 1.08999 * 109.62874 * 9.09909 * 14 13 11 42 42 H 1.09001 * 109.64569 * 294.07461 * 15 14 13 43 43 H 1.09002 * 109.42476 * 173.94584 * 15 14 13 44 44 H 1.08998 * 109.47079 * 54.30448 * 17 16 15 45 45 H 1.09002 * 109.46913 * 174.30358 * 17 16 15 46 46 H 0.97003 * 119.99992 * 180.02562 * 21 20 18 47 47 H 1.09000 * 109.49755 * 303.14448 * 26 16 15 48 48 H 1.09005 * 109.49551 * 183.05988 * 26 16 15 49 49 H 1.09005 * 109.62787 * 350.89798 * 27 13 11 50 50 H 1.08994 * 109.63219 * 111.47842 * 27 13 11 51 51 H 1.07996 * 120.02626 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1979 1.1980 0.0000 4 6 3.5802 1.2013 0.0058 5 6 4.2752 0.0071 0.0001 6 6 3.5845 -1.1959 -0.0056 7 8 4.2657 -2.3718 -0.0117 8 6 5.6927 -2.2949 -0.0113 9 6 6.2795 -3.7078 -0.0192 10 7 5.9277 -4.3757 -1.2748 11 6 6.3394 -5.6383 -1.5049 12 8 7.0790 -6.1903 -0.7133 13 7 5.9313 -6.2889 -2.6123 14 6 6.2840 -7.6997 -2.8321 15 6 4.9966 -8.4732 -3.1586 16 7 4.3122 -7.8221 -4.2836 17 6 3.1712 -8.6258 -4.7420 18 6 3.6715 -9.9244 -5.3202 19 1 4.7311 -10.1322 -5.3443 20 6 2.7765 -10.8474 -5.8184 21 7 1.4863 -10.5947 -5.7886 22 14 3.3966 -12.4575 -6.5345 23 1 3.4723 -13.4802 -5.4606 24 1 2.4640 -12.9198 -7.5936 25 1 4.7464 -12.2521 -7.1186 26 6 3.8896 -6.4595 -3.9336 27 6 5.1265 -5.6052 -3.6361 28 6 2.1970 -1.1965 -0.0056 29 1 -0.3634 -0.0048 1.0275 30 1 -0.3633 0.8924 -0.5096 31 1 -0.3633 -0.8875 -0.5181 32 1 1.6564 2.1325 -0.0004 33 1 4.1176 2.1381 0.0099 34 1 5.3552 0.0103 0.0006 35 1 6.0278 -1.7577 -0.8986 36 1 6.0279 -1.7669 0.8814 37 1 7.3643 -3.6512 0.0706 38 1 5.8746 -4.2742 0.8194 39 1 5.3984 -3.9092 -1.9405 40 1 6.9825 -7.7771 -3.6654 41 1 6.7393 -8.1082 -1.9299 42 1 4.3411 -8.4780 -2.2877 43 1 5.2486 -9.4983 -3.4302 44 1 2.5112 -8.8334 -3.8997 45 1 2.6227 -8.0753 -5.5063 46 1 0.8566 -11.2441 -6.1388 47 1 3.2495 -6.4923 -3.0520 48 1 3.3388 -6.0240 -4.7675 49 1 4.8162 -4.6281 -3.2657 50 1 5.7157 -5.4850 -4.5452 51 1 1.6570 -2.1318 -0.0096 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601257191.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:47:42 Heat of formation + Delta-G solvation = -49.574828 kcal Electronic energy + Delta-G solvation = -30012.309027 eV Core-core repulsion = 25911.312521 eV Total energy + Delta-G solvation = -4100.996506 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.54763 -41.05011 -39.22701 -38.66152 -36.02359 -35.96452 -34.38309 -33.39082 -32.32503 -31.56814 -30.36963 -29.45370 -27.85483 -27.16584 -24.93477 -24.19001 -23.80964 -23.46550 -22.26147 -21.74722 -20.61704 -19.21714 -18.83586 -18.50331 -17.69440 -17.13606 -16.90607 -16.81185 -16.59063 -16.52493 -16.01832 -15.72805 -15.40720 -15.29649 -15.20564 -15.03764 -14.76045 -14.48630 -14.28516 -14.10659 -14.09178 -13.69266 -13.54479 -13.09761 -13.04937 -12.94963 -12.75322 -12.67750 -12.58209 -12.40587 -12.38300 -12.31988 -12.17332 -11.85908 -11.75365 -11.70428 -11.39039 -11.17919 -10.62507 -10.30597 -9.72639 -9.61906 -9.13473 -9.06322 -8.21044 -6.30915 0.38041 0.50740 1.42493 1.43215 1.54772 1.56403 2.06836 2.15704 2.40545 2.81150 2.84413 3.11173 3.21470 3.65974 3.91629 3.92317 3.97910 4.02791 4.05850 4.13316 4.18157 4.23789 4.30699 4.34852 4.42059 4.44287 4.54244 4.56014 4.64233 4.69699 4.76301 4.81297 4.83433 4.89202 4.93439 5.00298 5.02867 5.16026 5.21123 5.24230 5.37383 5.40691 5.42469 5.51481 5.63446 5.68040 5.87865 5.88163 6.02489 6.24308 6.46134 6.56323 6.84540 6.87900 7.38812 7.46698 8.90183 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012626 B = 0.002079 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.144758 B =13467.598697 C =15296.851477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.056 4.056 3 C -0.168 4.168 4 C -0.080 4.080 5 C -0.220 4.220 6 C 0.119 3.881 7 O -0.332 6.332 8 C 0.052 3.948 9 C 0.141 3.859 10 N -0.735 5.735 11 C 0.705 3.295 12 O -0.632 6.632 13 N -0.629 5.629 14 C 0.146 3.854 15 C 0.056 3.944 16 N -0.536 5.536 17 C 0.209 3.791 18 C -0.523 4.523 19 H 0.067 0.933 20 C 0.001 3.999 21 N -0.935 5.935 22 Si 0.970 3.030 23 H -0.275 1.275 24 H -0.283 1.283 25 H -0.262 1.262 26 C 0.038 3.962 27 C 0.129 3.871 28 C -0.178 4.178 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.142 0.858 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.059 0.941 39 H 0.407 0.593 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.007 0.993 43 H 0.082 0.918 44 H -0.043 1.043 45 H 0.011 0.989 46 H 0.264 0.736 47 H 0.015 0.985 48 H 0.089 0.911 49 H 0.104 0.896 50 H 0.090 0.910 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.624 27.686 11.938 30.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.057 4.057 3 C -0.186 4.186 4 C -0.098 4.098 5 C -0.239 4.239 6 C 0.074 3.926 7 O -0.247 6.247 8 C -0.023 4.023 9 C 0.017 3.983 10 N -0.394 5.394 11 C 0.407 3.593 12 O -0.514 6.514 13 N -0.366 5.366 14 C 0.022 3.978 15 C -0.073 4.073 16 N -0.261 5.261 17 C 0.083 3.917 18 C -0.561 4.561 19 H 0.085 0.915 20 C -0.197 4.197 21 N -0.575 5.575 22 Si 0.794 3.206 23 H -0.201 1.201 24 H -0.208 1.208 25 H -0.187 1.187 26 C -0.091 4.091 27 C 0.006 3.994 28 C -0.197 4.197 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.085 0.915 32 H 0.160 0.840 33 H 0.167 0.833 34 H 0.166 0.834 35 H 0.108 0.892 36 H 0.122 0.878 37 H 0.118 0.882 38 H 0.077 0.923 39 H 0.245 0.755 40 H 0.099 0.901 41 H 0.105 0.895 42 H 0.026 0.974 43 H 0.100 0.900 44 H -0.026 1.026 45 H 0.029 0.971 46 H 0.073 0.927 47 H 0.033 0.967 48 H 0.107 0.893 49 H 0.122 0.878 50 H 0.108 0.892 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 6.242 27.079 12.095 30.307 hybrid contribution -1.077 -1.052 0.010 1.505 sum 5.165 26.027 12.106 29.165 Atomic orbital electron populations 1.20871 0.89565 1.03668 1.03220 1.20012 0.97188 0.92187 0.96268 1.21278 0.94713 0.98003 1.04580 1.21295 0.94305 0.98262 0.95905 1.21505 1.01337 0.91775 1.09250 1.19149 0.91822 0.85091 0.96563 1.86110 1.20966 1.28781 1.88812 1.23223 0.77718 0.96741 1.04643 1.21345 1.00633 0.90945 0.85381 1.45142 1.58861 1.13288 1.22064 1.15943 0.80269 0.81877 0.81245 1.90860 1.42474 1.68856 1.49226 1.47416 1.55882 1.12559 1.20729 1.21601 0.95564 0.78810 1.01812 1.22386 0.94835 0.99122 0.90961 1.62014 1.28196 1.02233 1.33679 1.19376 0.87274 0.92394 0.92684 1.21466 0.93742 1.01693 1.39204 0.91526 1.25922 0.94912 1.02457 0.96440 1.70085 1.02475 1.37261 1.47714 0.85375 0.78451 0.78728 0.78029 1.20068 1.20835 1.18657 1.22511 0.96641 0.90533 0.99432 1.21815 0.91114 0.94794 0.91714 1.20496 0.91570 0.99074 1.08567 0.90149 0.89882 0.91536 0.84038 0.83301 0.83443 0.89204 0.87846 0.88212 0.92253 0.75451 0.90058 0.89547 0.97434 0.89998 1.02569 0.97117 0.92709 0.96665 0.89296 0.87831 0.89204 0.86215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.34 10.01 71.23 0.71 -0.63 16 2 C -0.06 -0.89 5.88 -19.88 -0.12 -1.00 16 3 C -0.17 -2.18 9.70 22.28 0.22 -1.97 16 4 C -0.08 -0.95 10.04 22.25 0.22 -0.73 16 5 C -0.22 -2.98 9.04 22.37 0.20 -2.77 16 6 C 0.12 2.16 6.69 22.51 0.15 2.31 16 7 O -0.33 -6.22 10.08 -92.42 -0.93 -7.15 16 8 C 0.05 0.62 4.87 71.98 0.35 0.97 16 9 C 0.14 2.45 6.07 86.38 0.52 2.97 16 10 N -0.73 -16.06 5.42 -478.54 -2.59 -18.65 16 11 C 0.71 21.42 8.31 179.06 1.49 22.91 16 12 O -0.63 -23.67 15.83 -3.98 -0.06 -23.73 16 13 N -0.63 -18.99 3.00 -835.04 -2.51 -21.50 16 14 C 0.15 4.85 6.61 86.50 0.57 5.42 16 15 C 0.06 2.25 5.47 86.54 0.47 2.72 16 16 N -0.54 -22.80 4.62 -898.86 -4.15 -26.96 16 17 C 0.21 11.08 4.72 85.56 0.40 11.48 16 18 C -0.52 -29.35 8.41 25.60 0.22 -29.14 16 19 H 0.07 3.64 7.13 -2.91 -0.02 3.62 16 20 C 0.00 0.04 5.46 84.66 0.46 0.50 16 21 N -0.93 -56.26 13.29 21.45 0.28 -55.98 16 22 Si 0.97 44.18 29.54 68.60 2.03 46.21 16 23 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 24 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 25 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 26 C 0.04 1.29 5.62 86.39 0.49 1.78 16 27 C 0.13 3.29 6.59 86.35 0.57 3.86 16 28 C -0.18 -3.43 9.64 22.37 0.22 -3.22 16 29 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.08 0.71 8.08 -2.38 -0.02 0.69 16 31 H 0.07 0.81 8.08 -2.39 -0.02 0.79 16 32 H 0.14 1.20 8.06 -2.91 -0.02 1.18 16 33 H 0.15 0.95 8.06 -2.91 -0.02 0.93 16 34 H 0.15 1.25 6.30 -2.91 -0.02 1.23 16 35 H 0.09 0.75 7.66 -2.38 -0.02 0.73 16 36 H 0.10 0.79 7.66 -2.39 -0.02 0.77 16 37 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.41 7.35 5.97 -92.71 -0.55 6.79 16 40 H 0.08 2.55 8.14 -2.38 -0.02 2.53 16 41 H 0.09 2.94 7.09 -2.39 -0.02 2.92 16 42 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 43 H 0.08 3.49 6.67 -2.39 -0.02 3.47 16 44 H -0.04 -2.55 8.12 -2.39 -0.02 -2.57 16 45 H 0.01 0.61 7.97 -2.39 -0.02 0.59 16 46 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 47 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 48 H 0.09 2.87 7.99 -2.38 -0.02 2.85 16 49 H 0.10 1.95 5.63 -2.38 -0.01 1.94 16 50 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 51 H 0.12 2.41 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -74.52 410.06 -0.42 -74.94 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: 0.37 Total: 17.37 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: 7.15 Total: 15.46 kcal Atomic # 7 Polarization: -114.12 SS G_CDS: -8.97 Total: -123.09 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -0.99 Total: -30.89 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -74.52 -0.42 -74.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601257191.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.365 kcal (2) G-P(sol) polarization free energy of solvation -74.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds