Wall clock time and date at job start Wed Apr 1 2020 05:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38265 * 119.94559 * 2 1 4 4 C 1.38143 * 120.05537 * 179.97438 * 3 2 1 5 5 C 1.38732 * 119.94665 * 0.26041 * 4 3 2 6 6 O 1.35891 * 120.05737 * 179.74171 * 5 4 3 7 7 C 1.42896 * 117.00457 * 180.02562 * 6 5 4 8 8 C 1.52994 * 109.47680 * 180.02562 * 7 6 5 9 9 N 1.46493 * 109.47229 * 64.99810 * 8 7 6 10 10 C 1.34784 * 120.00128 * 179.97438 * 9 8 7 11 11 O 1.21584 * 119.99995 * 354.92516 * 10 9 8 12 12 N 1.34778 * 119.99979 * 174.91694 * 10 9 8 13 13 C 1.47078 * 120.88258 * 184.71942 * 12 10 9 14 14 C 1.53691 * 108.27808 * 128.75403 * 13 12 10 15 15 N 1.46904 * 109.25450 * 54.08726 * 14 13 12 16 16 C 1.46900 * 111.00117 * 172.60898 * 15 14 13 17 17 C 1.50698 * 109.46901 * 294.29797 * 16 15 14 18 18 H 1.08006 * 120.00112 * 0.02562 * 17 16 15 19 19 C 1.37880 * 120.00065 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00016 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99943 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46993 * 60.00376 * 21 19 17 23 23 H 1.48495 * 109.46844 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47016 * 300.00139 * 21 19 17 25 25 C 1.46896 * 111.26816 * 296.75454 * 15 14 13 26 26 C 1.47080 * 120.88087 * 4.99971 * 12 10 9 27 27 C 1.38733 * 119.88536 * 359.51517 * 5 4 3 28 28 C 1.38142 * 119.94314 * 0.46002 * 27 5 4 29 29 H 1.08997 * 109.47825 * 89.99630 * 1 2 3 30 30 H 1.09002 * 109.47201 * 209.99726 * 1 2 3 31 31 H 1.08998 * 109.47492 * 329.99215 * 1 2 3 32 32 H 1.07999 * 119.96949 * 359.96324 * 3 2 1 33 33 H 1.08002 * 120.02554 * 179.97438 * 4 3 2 34 34 H 1.09001 * 109.47469 * 300.00527 * 7 6 5 35 35 H 1.09004 * 109.47243 * 59.99750 * 7 6 5 36 36 H 1.09000 * 109.47239 * 184.99963 * 8 7 6 37 37 H 1.09003 * 109.46885 * 304.99810 * 8 7 6 38 38 H 0.97001 * 120.00400 * 0.02562 * 9 8 7 39 39 H 1.08999 * 109.62996 * 248.52792 * 13 12 10 40 40 H 1.09004 * 109.62625 * 9.11093 * 13 12 10 41 41 H 1.09001 * 109.65188 * 294.08433 * 14 13 12 42 42 H 1.09001 * 109.42434 * 173.94843 * 14 13 12 43 43 H 1.09003 * 109.46994 * 54.29707 * 16 15 14 44 44 H 1.09000 * 109.47090 * 174.29821 * 16 15 14 45 45 H 0.96994 * 119.99847 * 179.97438 * 20 19 17 46 46 H 1.09006 * 109.49177 * 303.14687 * 25 15 14 47 47 H 1.09001 * 109.49975 * 183.06615 * 25 15 14 48 48 H 1.09002 * 109.62858 * 350.89490 * 26 12 10 49 49 H 1.09002 * 109.62927 * 111.47722 * 26 12 10 50 50 H 1.08000 * 120.02772 * 180.20951 * 27 5 4 51 51 H 1.08003 * 119.97286 * 179.77340 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1971 1.1981 0.0000 4 6 3.5785 1.2007 0.0005 5 6 4.2734 0.0000 -0.0044 6 8 5.6323 0.0000 -0.0092 7 6 6.2811 -1.2732 -0.0147 8 6 7.7979 -1.0728 -0.0189 9 7 8.2094 -0.4335 1.2333 10 6 9.5103 -0.1578 1.4534 11 8 10.3523 -0.5218 0.6555 12 7 9.8776 0.5216 2.5580 13 6 11.2771 0.9227 2.7670 14 6 11.3046 2.4245 3.0927 15 7 10.4070 2.6913 4.2246 16 6 10.5349 4.0815 4.6816 17 6 11.9139 4.2988 5.2492 18 1 12.6244 3.4855 5.2681 19 6 12.2689 5.5360 5.7434 20 7 11.4040 6.5264 5.7200 21 14 13.9786 5.8055 6.4464 22 1 14.9936 5.5336 5.3972 23 1 14.1078 7.2108 6.9085 24 1 14.1930 4.8862 7.5927 25 6 9.0132 2.3748 3.8854 26 6 8.8906 0.8763 3.5892 27 6 3.5785 -1.2008 0.0003 28 6 2.1971 -1.1981 0.0003 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5139 32 1 1.6557 2.1326 -0.0006 33 1 4.1172 2.1368 0.0001 34 1 5.9914 -1.8326 0.8749 35 1 5.9851 -1.8281 -0.9050 36 1 8.2919 -2.0399 -0.1126 37 1 8.0782 -0.4386 -0.8599 38 1 7.5459 -0.2093 1.9044 39 1 11.7000 0.3571 3.5972 40 1 11.8517 0.7328 1.8604 41 1 10.9739 2.9941 2.2241 42 1 12.3202 2.7196 3.3565 43 1 10.3778 4.7565 3.8402 44 1 9.7895 4.2809 5.4515 45 1 11.6536 7.3967 6.0680 46 1 8.7145 2.9450 3.0057 47 1 8.3669 2.6338 4.7240 48 1 7.8867 0.6556 3.2265 49 1 9.0886 0.3063 4.4969 50 1 4.1172 -2.1369 -0.0001 51 1 1.6557 -2.1326 0.0003 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601542770.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:47:46 Heat of formation + Delta-G solvation = -27.532119 kcal Electronic energy + Delta-G solvation = -29905.037660 eV Core-core repulsion = 25804.996998 eV Total energy + Delta-G solvation = -4100.040662 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.62233 -40.11457 -38.23704 -37.57132 -35.00389 -34.37228 -32.47409 -32.28425 -31.42079 -30.84235 -29.77129 -27.97847 -26.58428 -25.47013 -24.16758 -23.15331 -22.43229 -22.08641 -21.40878 -20.72632 -19.34855 -18.66778 -17.97438 -16.79530 -16.33962 -16.31006 -15.81529 -15.65074 -15.45299 -14.88668 -14.77310 -14.52338 -14.33335 -14.13059 -13.93675 -13.86030 -13.85052 -13.69053 -13.55578 -13.33412 -12.66638 -12.47779 -12.44680 -12.18821 -12.06446 -11.93283 -11.86862 -11.27764 -11.20240 -11.14306 -11.08669 -10.82263 -10.73979 -10.59524 -10.50053 -10.00096 -9.83764 -9.36227 -9.28180 -9.18874 -8.46843 -8.39587 -8.31237 -7.30840 -6.04850 -4.06659 0.98270 1.06290 2.67041 2.79708 3.31385 3.33227 3.37217 3.39104 3.40101 3.90843 4.27929 4.40258 4.47588 4.50831 4.58099 4.61703 4.75757 4.83192 4.90488 4.98961 5.11460 5.23315 5.23747 5.30024 5.34078 5.37324 5.38766 5.43568 5.52261 5.56902 5.67585 5.69474 5.84844 5.93995 5.94772 5.99794 6.05765 6.22439 6.25949 6.37057 6.43229 6.44483 6.57934 6.69526 7.05289 7.05919 7.23547 7.30095 7.75370 7.99822 8.03026 8.14011 8.49148 8.67264 9.00334 9.57766 11.05937 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013749 B = 0.001971 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.050381 B =14201.670071 C =15876.660676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.127 4.127 3 C -0.080 4.080 4 C -0.146 4.146 5 C 0.126 3.874 6 O -0.310 6.310 7 C 0.047 3.953 8 C 0.143 3.857 9 N -0.748 5.748 10 C 0.708 3.292 11 O -0.598 6.598 12 N -0.624 5.624 13 C 0.133 3.867 14 C 0.050 3.950 15 N -0.535 5.535 16 C 0.194 3.806 17 C -0.510 4.510 18 H 0.064 0.936 19 C 0.056 3.944 20 N -0.898 5.898 21 Si 0.899 3.101 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.276 1.276 25 C 0.041 3.959 26 C 0.119 3.881 27 C -0.206 4.206 28 C -0.082 4.082 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.129 0.871 33 H 0.132 0.868 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.398 0.602 39 H 0.070 0.930 40 H 0.088 0.912 41 H 0.025 0.975 42 H 0.097 0.903 43 H -0.009 1.009 44 H 0.031 0.969 45 H 0.262 0.738 46 H 0.027 0.973 47 H 0.080 0.920 48 H 0.069 0.931 49 H 0.075 0.925 50 H 0.127 0.873 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.538 -17.130 -12.019 29.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.128 4.128 3 C -0.098 4.098 4 C -0.165 4.165 5 C 0.080 3.920 6 O -0.224 6.224 7 C -0.028 4.028 8 C 0.018 3.982 9 N -0.408 5.408 10 C 0.410 3.590 11 O -0.477 6.477 12 N -0.361 5.361 13 C 0.011 3.989 14 C -0.079 4.079 15 N -0.260 5.260 16 C 0.069 3.931 17 C -0.548 4.548 18 H 0.082 0.918 19 C -0.146 4.146 20 N -0.538 5.538 21 Si 0.727 3.273 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.201 1.201 25 C -0.089 4.089 26 C -0.005 4.005 27 C -0.225 4.225 28 C -0.100 4.100 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.147 0.853 33 H 0.150 0.850 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.235 0.765 39 H 0.089 0.911 40 H 0.106 0.894 41 H 0.043 0.957 42 H 0.115 0.885 43 H 0.009 0.991 44 H 0.049 0.951 45 H 0.072 0.928 46 H 0.045 0.955 47 H 0.099 0.901 48 H 0.087 0.913 49 H 0.094 0.906 50 H 0.145 0.855 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -19.659 -17.329 -12.183 28.900 hybrid contribution 0.162 0.759 0.132 0.787 sum -19.496 -16.570 -12.051 28.283 Atomic orbital electron populations 1.20723 0.91086 1.02704 1.02139 1.19851 0.96269 0.93073 1.03578 1.20884 0.93002 0.97875 0.98064 1.20502 0.93809 0.96565 1.05586 1.19013 0.82290 0.94170 0.96491 1.86154 1.16310 1.31384 1.88546 1.23137 0.92429 0.84703 1.02554 1.21184 0.90403 0.99314 0.87251 1.45175 1.07202 1.67247 1.21159 1.15792 0.82470 0.78876 0.81862 1.90885 1.50281 1.58794 1.47721 1.47402 1.10511 1.58122 1.20078 1.21838 0.80018 0.95455 1.01639 1.22456 0.99957 0.93275 0.92180 1.62081 1.03001 1.28345 1.32559 1.19720 0.98028 0.80757 0.94581 1.21107 0.98049 0.95971 1.39690 0.91810 1.24996 0.97544 0.95971 0.96084 1.69946 1.34888 1.02227 1.46706 0.86542 0.84252 0.77010 0.79498 1.20230 1.21396 1.20147 1.22375 0.93075 0.93786 0.99661 1.21766 0.90607 0.96918 0.91193 1.21242 0.95407 0.97001 1.08838 1.20820 0.93285 0.97693 0.98169 0.91449 0.91736 0.91587 0.85341 0.84994 0.91190 0.90188 0.89357 0.90543 0.76505 0.91141 0.89372 0.95722 0.88484 0.99123 0.95077 0.92839 0.95477 0.90146 0.91295 0.90647 0.85480 0.85899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.57 10.01 36.00 0.36 -0.20 16 2 C -0.13 -0.95 5.88 -104.60 -0.62 -1.57 16 3 C -0.08 -0.64 9.69 -39.61 -0.38 -1.02 16 4 C -0.15 -1.36 9.99 -39.43 -0.39 -1.75 16 5 C 0.13 1.19 6.69 -39.22 -0.26 0.92 16 6 O -0.31 -3.05 10.08 -19.40 -0.20 -3.25 16 7 C 0.05 0.34 4.87 37.15 0.18 0.52 16 8 C 0.14 1.36 6.06 -4.05 -0.02 1.33 16 9 N -0.75 -8.84 5.42 -65.23 -0.35 -9.19 16 10 C 0.71 11.17 8.31 -86.91 -0.72 10.45 16 11 O -0.60 -11.35 15.83 5.29 0.08 -11.26 16 12 N -0.62 -9.79 3.00 -177.91 -0.53 -10.33 16 13 C 0.13 2.25 6.61 -3.37 -0.02 2.23 16 14 C 0.05 0.99 5.47 -3.46 -0.02 0.97 16 15 N -0.53 -11.19 4.62 -235.46 -1.09 -12.27 16 16 C 0.19 4.96 4.72 -4.98 -0.02 4.94 16 17 C -0.51 -14.04 8.41 -34.44 -0.29 -14.33 16 18 H 0.06 1.72 7.13 -52.48 -0.37 1.35 16 19 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 20 N -0.90 -26.47 13.29 55.43 0.74 -25.73 16 21 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 C 0.04 0.70 5.62 -3.70 -0.02 0.68 16 26 C 0.12 1.64 6.59 -3.60 -0.02 1.61 16 27 C -0.21 -1.62 9.04 -39.43 -0.36 -1.98 16 28 C -0.08 -0.60 9.69 -39.61 -0.38 -0.98 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.28 8.08 -51.93 -0.42 -0.14 16 31 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 32 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 33 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 34 H 0.07 0.41 7.65 -51.93 -0.40 0.01 16 35 H 0.08 0.42 7.67 -51.93 -0.40 0.02 16 36 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.40 4.08 5.97 -40.82 -0.24 3.84 16 39 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.09 1.50 7.09 -51.93 -0.37 1.13 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.10 2.01 6.67 -51.93 -0.35 1.66 16 43 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 44 H 0.03 0.84 7.97 -51.93 -0.41 0.43 16 45 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 46 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.08 1.31 7.99 -51.93 -0.41 0.90 16 48 H 0.07 0.75 5.63 -51.93 -0.29 0.46 16 49 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 50 H 0.13 0.75 6.30 -52.49 -0.33 0.42 16 51 H 0.12 0.65 8.06 -52.48 -0.42 0.22 16 LS Contribution 410.06 15.07 6.18 6.18 Total: -1.00 -33.55 410.06 -11.49 -45.05 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -8.20 Total: 1.09 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: -3.10 Total: 3.28 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: -1.24 Total: -57.52 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.11 Total: -14.51 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.55 -11.49 -45.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601542770.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.515 kcal (2) G-P(sol) polarization free energy of solvation -33.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds