Wall clock time and date at job start Wed Apr 1 2020 05:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35897 * 116.99836 * 2 1 4 4 C 1.38760 * 120.05720 * 359.72796 * 3 2 1 5 5 C 1.38124 * 119.94296 * 179.74173 * 4 3 2 6 6 C 1.50698 * 119.97360 * 180.25155 * 5 4 3 7 7 C 1.38289 * 120.05468 * 0.51263 * 5 4 3 8 8 C 1.38245 * 120.11325 * 359.75761 * 7 5 4 9 9 C 1.38169 * 120.05525 * 359.97438 * 8 7 5 10 10 C 1.50693 * 120.02739 * 179.97438 * 9 8 7 11 11 N 1.46502 * 109.47225 * 260.02089 * 10 9 8 12 12 C 1.34783 * 119.99943 * 179.97438 * 11 10 9 13 13 O 1.21591 * 119.99842 * 354.92207 * 12 11 10 14 14 N 1.34777 * 119.99958 * 174.92063 * 12 11 10 15 15 C 1.47081 * 120.88001 * 184.71646 * 14 12 11 16 16 C 1.53703 * 108.27278 * 128.75405 * 15 14 12 17 17 N 1.46898 * 109.25654 * 54.08231 * 16 15 14 18 18 C 1.46897 * 111.00001 * 172.60107 * 17 16 15 19 19 C 1.50702 * 109.47369 * 294.30778 * 18 17 16 20 20 H 1.07999 * 119.99836 * 359.97438 * 19 18 17 21 21 C 1.37878 * 119.99688 * 180.02562 * 19 18 17 22 22 N 1.31511 * 120.00185 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99780 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.46982 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47040 * 119.99835 * 23 21 19 26 26 H 1.48493 * 109.47254 * 239.99901 * 23 21 19 27 27 C 1.46894 * 111.27201 * 296.75638 * 17 16 15 28 28 C 1.47077 * 120.88094 * 4.99454 * 14 12 11 29 29 H 1.09000 * 109.47278 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47118 * 60.00233 * 1 2 3 31 31 H 1.09000 * 109.47217 * 299.99709 * 1 2 3 32 32 H 1.07999 * 120.02893 * 359.97245 * 4 3 2 33 33 H 1.09001 * 109.47357 * 270.26151 * 6 5 4 34 34 H 1.09001 * 109.46720 * 30.25207 * 6 5 4 35 35 H 1.09000 * 109.47301 * 150.25348 * 6 5 4 36 36 H 1.08002 * 119.94578 * 179.74433 * 7 5 4 37 37 H 1.07996 * 119.97342 * 179.97438 * 8 7 5 38 38 H 1.09005 * 109.47256 * 20.02289 * 10 9 8 39 39 H 1.08999 * 109.47141 * 140.02341 * 10 9 8 40 40 H 0.96995 * 120.00297 * 0.02562 * 11 10 9 41 41 H 1.08994 * 109.62799 * 248.52346 * 15 14 12 42 42 H 1.09000 * 109.62777 * 9.10591 * 15 14 12 43 43 H 1.08993 * 109.64839 * 294.07830 * 16 15 14 44 44 H 1.09001 * 109.41799 * 173.94571 * 16 15 14 45 45 H 1.09007 * 109.46838 * 54.30589 * 18 17 16 46 46 H 1.08998 * 109.47133 * 174.29952 * 18 17 16 47 47 H 0.97004 * 119.99747 * 179.97438 * 22 21 19 48 48 H 1.08996 * 109.49232 * 303.14721 * 27 17 16 49 49 H 1.09001 * 109.49604 * 183.06227 * 27 17 16 50 50 H 1.08998 * 109.62817 * 350.90014 * 28 14 12 51 51 H 1.09005 * 109.62777 * 111.47232 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9208 3.6048 -0.0003 6 6 1.1020 4.8699 -0.0008 7 6 3.3019 3.6758 0.0001 8 6 4.0560 2.5171 0.0001 9 6 3.4311 1.2848 0.0003 10 6 4.2537 0.0222 -0.0003 11 7 4.3191 -0.5175 -1.3607 12 6 5.0070 -1.6508 -1.6038 13 8 5.6492 -2.1748 -0.7141 14 7 4.9830 -2.2031 -2.8329 15 6 5.6409 -3.4924 -3.0941 16 6 4.6294 -4.4174 -3.7897 17 7 4.0934 -3.7420 -4.9790 18 6 3.2568 -4.6541 -5.7701 19 6 4.1120 -5.7605 -6.3319 20 1 5.1713 -5.7835 -6.1224 21 6 3.5423 -6.7427 -7.1140 22 7 2.2526 -6.7143 -7.3694 23 14 4.6026 -8.1137 -7.8109 24 1 6.0101 -7.9189 -7.3795 25 1 4.1093 -9.4228 -7.3126 26 1 4.5310 -8.0897 -9.2939 27 6 3.3498 -2.5291 -4.6133 28 6 4.3035 -1.5297 -3.9500 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5138 0.8900 32 1 0.2128 2.3204 -0.0106 33 1 0.9048 5.1747 -1.0285 34 1 0.1572 4.6912 0.5127 35 1 1.6514 5.6586 0.5132 36 1 3.7922 4.6381 0.0001 37 1 5.1344 2.5752 0.0000 38 1 5.2613 0.2448 0.3511 39 1 3.7926 -0.7122 0.6601 40 1 3.8679 -0.0589 -2.0866 41 1 6.5051 -3.3382 -3.7400 42 1 5.9592 -3.9385 -2.1519 43 1 3.8139 -4.6497 -3.1048 44 1 5.1277 -5.3396 -4.0887 45 1 2.4823 -5.0813 -5.1331 46 1 2.7917 -4.1034 -6.5878 47 1 1.8519 -7.4052 -7.9200 48 1 2.5521 -2.7876 -3.9169 49 1 2.9200 -2.0818 -5.5096 50 1 3.7373 -0.6776 -3.5740 51 1 5.0417 -1.1904 -4.6766 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601582762.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:47:52 Heat of formation + Delta-G solvation = -48.615306 kcal Electronic energy + Delta-G solvation = -30672.358650 eV Core-core repulsion = 26571.403752 eV Total energy + Delta-G solvation = -4100.954898 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.63951 -41.09655 -39.13513 -38.57847 -36.28973 -35.98074 -34.41836 -33.53770 -32.02288 -31.09689 -30.20252 -29.15159 -28.31226 -27.15841 -25.48440 -24.45368 -23.89379 -23.21300 -22.24869 -21.96017 -20.58124 -19.33649 -18.51573 -18.39075 -17.51800 -17.38127 -16.84452 -16.65786 -16.55472 -16.41627 -16.01414 -15.66472 -15.36672 -15.30712 -15.19824 -14.96755 -14.94198 -14.56640 -14.46997 -14.08409 -13.85681 -13.57006 -13.52032 -13.12443 -13.03349 -13.00274 -12.75964 -12.74238 -12.59544 -12.37098 -12.31924 -12.28003 -12.16658 -11.85899 -11.77416 -11.75478 -11.38458 -11.17707 -10.62435 -10.26051 -9.76353 -9.59081 -9.13435 -9.04974 -8.20883 -6.30413 0.19520 0.46256 1.42047 1.42836 1.56351 1.65172 2.10619 2.35325 2.40826 2.66499 3.01719 3.11551 3.22617 3.60933 3.82190 3.93550 3.96162 4.04829 4.13566 4.16797 4.24747 4.26299 4.32824 4.34717 4.42540 4.51850 4.57216 4.64784 4.69366 4.70325 4.75145 4.81491 4.84159 4.84959 4.93250 4.94182 5.01062 5.16712 5.21799 5.24862 5.32025 5.41564 5.45800 5.50067 5.63851 5.64375 5.85783 5.91313 6.03107 6.25327 6.41856 6.57256 6.85326 6.92111 7.39304 7.50146 8.90499 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017560 B = 0.002158 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.188807 B =12973.340215 C =13691.617903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.334 6.334 3 C 0.135 3.865 4 C -0.219 4.219 5 C -0.042 4.042 6 C -0.117 4.117 7 C -0.164 4.164 8 C -0.057 4.057 9 C -0.163 4.163 10 C 0.198 3.802 11 N -0.726 5.726 12 C 0.706 3.294 13 O -0.634 6.634 14 N -0.629 5.629 15 C 0.146 3.854 16 C 0.057 3.943 17 N -0.537 5.537 18 C 0.209 3.791 19 C -0.522 4.522 20 H 0.066 0.934 21 C 0.001 3.999 22 N -0.935 5.935 23 Si 0.969 3.031 24 H -0.262 1.262 25 H -0.281 1.281 26 H -0.278 1.278 27 C 0.040 3.960 28 C 0.129 3.871 29 H 0.103 0.897 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.143 0.857 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.073 0.927 39 H 0.052 0.948 40 H 0.403 0.597 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.008 0.992 44 H 0.082 0.918 45 H -0.043 1.043 46 H 0.011 0.989 47 H 0.264 0.736 48 H 0.016 0.984 49 H 0.089 0.911 50 H 0.101 0.899 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.682 25.887 15.633 30.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.247 6.247 3 C 0.089 3.911 4 C -0.237 4.237 5 C -0.042 4.042 6 C -0.173 4.173 7 C -0.182 4.182 8 C -0.076 4.076 9 C -0.164 4.164 10 C 0.074 3.926 11 N -0.384 5.384 12 C 0.408 3.592 13 O -0.516 6.516 14 N -0.365 5.365 15 C 0.022 3.978 16 C -0.072 4.072 17 N -0.261 5.261 18 C 0.083 3.917 19 C -0.560 4.560 20 H 0.084 0.916 21 C -0.197 4.197 22 N -0.575 5.575 23 Si 0.794 3.206 24 H -0.186 1.186 25 H -0.207 1.207 26 H -0.204 1.204 27 C -0.089 4.089 28 C 0.006 3.994 29 H 0.122 0.878 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.161 0.839 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.165 0.835 37 H 0.163 0.837 38 H 0.091 0.909 39 H 0.070 0.930 40 H 0.241 0.759 41 H 0.099 0.901 42 H 0.103 0.897 43 H 0.026 0.974 44 H 0.100 0.900 45 H -0.025 1.025 46 H 0.029 0.971 47 H 0.073 0.927 48 H 0.034 0.966 49 H 0.108 0.892 50 H 0.119 0.881 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.908 25.368 15.918 30.009 hybrid contribution -1.221 -1.246 -0.346 1.779 sum -3.129 24.121 15.572 28.881 Atomic orbital electron populations 1.23278 0.76775 1.04931 1.02411 1.86140 1.23127 1.27196 1.88254 1.19092 0.91895 0.84811 0.95271 1.21324 1.00807 0.91471 1.10142 1.20134 0.94486 0.95224 0.94357 1.20901 0.99476 0.93515 1.03422 1.21243 0.93251 0.99092 1.04578 1.21142 1.00931 0.90385 0.95136 1.19175 0.90573 0.95244 1.11412 1.19685 0.98790 0.91758 0.82333 1.45199 1.55922 1.25882 1.11398 1.15952 0.79956 0.81073 0.82268 1.90851 1.49172 1.65908 1.45659 1.47403 1.57939 1.23083 1.08117 1.21597 0.94449 0.81752 0.99979 1.22373 0.96860 0.97689 0.90267 1.62000 1.37542 1.07040 1.19554 1.19378 0.90733 0.90527 0.91076 1.21497 0.95426 1.08501 1.30558 0.91580 1.25909 0.96282 1.00786 0.96739 1.70088 1.12190 1.35722 1.39515 0.85330 0.79097 0.78201 0.77976 1.18587 1.20724 1.20376 1.22494 0.94754 0.92214 0.99477 1.21799 0.95502 0.94064 0.88039 0.87816 0.91501 0.91235 0.83905 0.89968 0.90768 0.89994 0.83487 0.83710 0.90859 0.93010 0.75864 0.90123 0.89672 0.97388 0.90013 1.02495 0.97061 0.92722 0.96598 0.89226 0.88108 0.89286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.33 -7.15 9.73 -92.39 -0.90 -8.05 16 3 C 0.14 2.61 6.66 22.51 0.15 2.76 16 4 C -0.22 -3.25 8.69 22.37 0.19 -3.05 16 5 C -0.04 -0.52 5.88 -19.88 -0.12 -0.64 16 6 C -0.12 -0.80 10.01 71.24 0.71 -0.09 16 7 C -0.16 -2.01 9.70 22.28 0.22 -1.79 16 8 C -0.06 -0.85 9.67 22.25 0.22 -0.64 16 9 C -0.16 -3.14 5.26 -19.77 -0.10 -3.24 16 10 C 0.20 4.71 5.47 85.63 0.47 5.18 16 11 N -0.73 -18.56 5.46 -482.28 -2.63 -21.19 16 12 C 0.71 23.19 8.31 179.05 1.49 24.67 16 13 O -0.63 -25.43 15.83 -4.00 -0.06 -25.50 16 14 N -0.63 -19.90 3.00 -835.02 -2.51 -22.41 16 15 C 0.15 5.01 6.61 86.51 0.57 5.58 16 16 C 0.06 2.32 5.47 86.54 0.47 2.80 16 17 N -0.54 -22.94 4.62 -898.90 -4.15 -27.09 16 18 C 0.21 11.07 4.72 85.56 0.40 11.48 16 19 C -0.52 -29.31 8.41 25.60 0.22 -29.10 16 20 H 0.07 3.63 7.13 -2.91 -0.02 3.61 16 21 C 0.00 0.04 5.46 84.66 0.46 0.51 16 22 N -0.93 -56.08 13.29 21.45 0.28 -55.79 16 23 Si 0.97 44.26 29.54 68.60 2.03 46.28 16 24 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 25 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 26 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 27 C 0.04 1.36 5.62 86.38 0.49 1.85 16 28 C 0.13 3.43 6.59 86.35 0.57 4.00 16 29 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.07 0.75 7.65 -2.39 -0.02 0.74 16 31 H 0.07 0.72 7.67 -2.39 -0.02 0.70 16 32 H 0.14 1.59 6.30 -2.91 -0.02 1.57 16 33 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.07 0.42 8.09 -2.39 -0.02 0.40 16 35 H 0.08 0.39 8.09 -2.39 -0.02 0.37 16 36 H 0.15 1.11 8.06 -2.91 -0.02 1.08 16 37 H 0.15 1.68 8.04 -2.91 -0.02 1.66 16 38 H 0.07 1.70 8.00 -2.38 -0.02 1.68 16 39 H 0.05 1.46 7.85 -2.39 -0.02 1.44 16 40 H 0.40 8.69 5.96 -92.71 -0.55 8.14 16 41 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 42 H 0.08 3.01 7.09 -2.39 -0.02 2.99 16 43 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 44 H 0.08 3.53 6.67 -2.39 -0.02 3.51 16 45 H -0.04 -2.50 8.13 -2.38 -0.02 -2.52 16 46 H 0.01 0.63 7.97 -2.39 -0.02 0.62 16 47 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 48 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 49 H 0.09 2.88 7.99 -2.39 -0.02 2.87 16 50 H 0.10 2.05 5.63 -2.39 -0.01 2.03 16 51 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 Total: -1.00 -73.93 408.60 -0.05 -73.98 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.38 Total: 18.09 kcal Atomic # 6 Polarization: 14.16 SS G_CDS: 7.52 Total: 21.67 kcal Atomic # 7 Polarization: -117.47 SS G_CDS: -9.01 Total: -126.48 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -0.96 Total: -33.55 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Total: -73.93 -0.05 -73.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601582762.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.364 kcal (2) G-P(sol) polarization free energy of solvation -73.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds