Wall clock time and date at job start Wed Apr 1 2020 05:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35908 * 116.99967 * 2 1 4 4 C 1.38749 * 120.05605 * 0.02562 * 3 2 1 5 5 C 1.38119 * 119.94545 * 180.02562 * 4 3 2 6 6 C 1.50698 * 119.97201 * 179.97438 * 5 4 3 7 7 C 1.38285 * 120.05415 * 359.97012 * 5 4 3 8 8 C 1.38243 * 120.11357 * 0.02722 * 7 5 4 9 9 C 1.50704 * 119.97161 * 179.97438 * 8 7 5 10 10 N 1.46496 * 109.47101 * 269.97966 * 9 8 7 11 11 C 1.34777 * 119.99659 * 180.02562 * 10 9 8 12 12 O 1.21587 * 120.00278 * 354.91245 * 11 10 9 13 13 N 1.34781 * 119.99808 * 174.91782 * 11 10 9 14 14 C 1.47082 * 120.88015 * 184.71273 * 13 11 10 15 15 C 1.53700 * 108.27248 * 128.75444 * 14 13 11 16 16 N 1.46891 * 109.25813 * 54.08471 * 15 14 13 17 17 C 1.46901 * 111.00251 * 172.60335 * 16 15 14 18 18 C 1.50700 * 109.47284 * 294.30297 * 17 16 15 19 19 H 1.07996 * 119.99727 * 359.97438 * 18 17 16 20 20 C 1.37878 * 120.00043 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99895 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99783 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47063 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.47051 * 120.00140 * 22 20 18 25 25 H 1.48496 * 109.46947 * 240.00143 * 22 20 18 26 26 C 1.46897 * 111.27139 * 296.75045 * 16 15 14 27 27 C 1.47083 * 120.88274 * 4.99060 * 13 11 10 28 28 C 1.38163 * 120.05321 * 359.97438 * 8 7 5 29 29 H 1.08994 * 109.47279 * 300.00361 * 1 2 3 30 30 H 1.09004 * 109.46666 * 60.00163 * 1 2 3 31 31 H 1.09005 * 109.47070 * 180.02562 * 1 2 3 32 32 H 1.07997 * 120.02678 * 0.03907 * 4 3 2 33 33 H 1.08996 * 109.47591 * 269.97635 * 6 5 4 34 34 H 1.09001 * 109.47329 * 29.97959 * 6 5 4 35 35 H 1.09004 * 109.47302 * 149.97675 * 6 5 4 36 36 H 1.08001 * 119.94201 * 179.97438 * 7 5 4 37 37 H 1.08998 * 109.47292 * 29.98104 * 9 8 7 38 38 H 1.09002 * 109.46974 * 149.97949 * 9 8 7 39 39 H 0.97002 * 120.00579 * 359.97438 * 10 9 8 40 40 H 1.09001 * 109.62889 * 248.51898 * 14 13 11 41 41 H 1.09000 * 109.62802 * 9.10477 * 14 13 11 42 42 H 1.08993 * 109.64923 * 294.07432 * 15 14 13 43 43 H 1.09002 * 109.41577 * 173.94539 * 15 14 13 44 44 H 1.09007 * 109.46835 * 54.30276 * 17 16 15 45 45 H 1.08996 * 109.47561 * 174.29538 * 17 16 15 46 46 H 0.96997 * 119.99376 * 179.97438 * 21 20 18 47 47 H 1.08995 * 109.49367 * 303.15228 * 26 16 15 48 48 H 1.08998 * 109.49575 * 183.06270 * 26 16 15 49 49 H 1.09005 * 109.62862 * 350.89686 * 27 13 11 50 50 H 1.08999 * 109.62759 * 111.47465 * 27 13 11 51 51 H 1.08002 * 120.02318 * 179.74742 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9208 3.6048 0.0000 6 6 1.1019 4.8698 0.0000 7 6 3.3018 3.6758 -0.0004 8 6 4.0559 2.5171 -0.0009 9 6 5.5608 2.5983 -0.0020 10 7 6.0474 2.6240 -1.3835 11 6 7.3705 2.6947 -1.6307 12 8 8.1543 2.8304 -0.7112 13 7 7.8246 2.6152 -2.8972 14 6 9.2674 2.5866 -3.1814 15 6 9.5538 1.3890 -4.1011 16 7 8.6895 1.4705 -5.2860 17 6 9.0514 0.4448 -6.2734 18 6 10.4321 0.7267 -6.8076 19 1 10.9851 1.5825 -6.4497 20 6 10.9892 -0.1079 -7.7531 21 7 10.3155 -1.1498 -8.1892 22 14 12.7003 0.2420 -8.4158 23 1 13.2412 1.4645 -7.7689 24 1 13.5906 -0.9091 -8.1200 25 1 12.6296 0.4486 -9.8846 26 6 7.2707 1.3700 -4.9187 27 6 6.8906 2.5607 -4.0321 28 6 3.4310 1.2849 -0.0004 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 0.2128 2.3204 0.0016 33 1 0.9043 5.1749 -1.0276 34 1 0.1573 4.6912 0.5139 35 1 1.6515 5.6585 0.5138 36 1 3.7921 4.6381 -0.0013 37 1 5.8760 3.5067 0.5113 38 1 5.9718 1.7293 0.5119 39 1 5.4176 2.5894 -2.1204 40 1 9.5613 3.5117 -3.6775 41 1 9.8220 2.4753 -2.2496 42 1 9.3524 0.4604 -3.5671 43 1 10.5987 1.4117 -4.4109 44 1 9.0388 -0.5366 -5.7990 45 1 8.3341 0.4609 -7.0938 46 1 10.7073 -1.7368 -8.8546 47 1 7.1011 0.4417 -4.3733 48 1 6.6597 1.3790 -5.8213 49 1 5.8730 2.4323 -3.6630 50 1 6.9604 3.4834 -4.6083 51 1 4.0206 0.3800 -0.0049 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601587678.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:47:57 Heat of formation + Delta-G solvation = -27.378327 kcal Electronic energy + Delta-G solvation = -30104.919901 eV Core-core repulsion = 26004.885908 eV Total energy + Delta-G solvation = -4100.033993 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.70985 -40.10268 -38.28480 -37.54748 -35.16249 -34.37262 -32.92664 -32.34120 -31.04605 -30.42501 -28.30482 -28.27610 -27.05675 -26.17972 -25.21871 -23.15017 -22.20959 -22.11598 -21.15731 -20.67706 -19.30087 -18.18631 -17.58832 -16.83205 -16.45678 -16.36837 -16.19519 -16.05559 -15.42738 -14.96676 -14.56303 -14.41835 -14.36227 -14.20764 -13.96071 -13.83477 -13.68207 -13.51131 -13.33264 -13.27433 -12.75123 -12.61593 -12.40755 -12.20575 -12.18762 -11.96767 -11.78933 -11.33401 -11.26542 -11.21018 -11.10574 -10.83278 -10.71934 -10.58523 -10.49700 -10.00996 -9.84472 -9.25636 -9.14720 -9.13673 -8.53698 -8.47597 -8.29687 -7.30644 -6.05367 -4.06919 0.81225 1.05850 2.74782 2.88373 3.30395 3.33164 3.37363 3.38060 3.42822 4.03189 4.26500 4.29273 4.40400 4.61316 4.69191 4.72885 4.79555 4.82841 4.92728 5.04351 5.06519 5.15673 5.19176 5.24125 5.29816 5.30132 5.38609 5.43562 5.50711 5.55023 5.68529 5.74094 5.85715 5.88940 5.95959 6.06632 6.11545 6.22190 6.23885 6.35309 6.42226 6.45420 6.58532 6.71534 7.01113 7.08341 7.23620 7.29939 7.75951 8.01594 8.03910 8.14057 8.49078 8.70046 9.00842 9.57700 11.05540 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016061 B = 0.001987 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.979726 B =14085.803274 C =14988.748716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.316 6.316 3 C 0.129 3.871 4 C -0.203 4.203 5 C -0.050 4.050 6 C -0.116 4.116 7 C -0.137 4.137 8 C -0.063 4.063 9 C 0.181 3.819 10 N -0.747 5.747 11 C 0.708 3.292 12 O -0.596 6.596 13 N -0.624 5.624 14 C 0.133 3.867 15 C 0.050 3.950 16 N -0.535 5.535 17 C 0.193 3.807 18 C -0.508 4.508 19 H 0.065 0.935 20 C 0.055 3.945 21 N -0.898 5.898 22 Si 0.898 3.102 23 H -0.271 1.271 24 H -0.285 1.285 25 H -0.284 1.284 26 C 0.041 3.959 27 C 0.119 3.881 28 C -0.137 4.137 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.100 0.900 32 H 0.128 0.872 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.127 0.873 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.397 0.603 40 H 0.070 0.930 41 H 0.088 0.912 42 H 0.025 0.975 43 H 0.097 0.903 44 H -0.009 1.009 45 H 0.031 0.969 46 H 0.261 0.739 47 H 0.027 0.973 48 H 0.080 0.920 49 H 0.069 0.931 50 H 0.075 0.925 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.576 8.590 17.464 29.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.229 6.229 3 C 0.084 3.916 4 C -0.222 4.222 5 C -0.050 4.050 6 C -0.173 4.173 7 C -0.156 4.156 8 C -0.063 4.063 9 C 0.058 3.942 10 N -0.405 5.405 11 C 0.410 3.590 12 O -0.475 6.475 13 N -0.361 5.361 14 C 0.011 3.989 15 C -0.079 4.079 16 N -0.260 5.260 17 C 0.069 3.931 18 C -0.546 4.546 19 H 0.083 0.917 20 C -0.147 4.147 21 N -0.538 5.538 22 Si 0.726 3.274 23 H -0.196 1.196 24 H -0.211 1.211 25 H -0.210 1.210 26 C -0.089 4.089 27 C -0.005 4.005 28 C -0.156 4.156 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.119 0.881 32 H 0.146 0.854 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.145 0.855 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.233 0.767 40 H 0.088 0.912 41 H 0.107 0.893 42 H 0.043 0.957 43 H 0.115 0.885 44 H 0.009 0.991 45 H 0.049 0.951 46 H 0.070 0.930 47 H 0.045 0.955 48 H 0.098 0.902 49 H 0.087 0.913 50 H 0.094 0.906 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -21.813 8.783 17.805 29.495 hybrid contribution 0.012 -0.782 -0.575 0.971 sum -21.801 8.000 17.230 28.916 Atomic orbital electron populations 1.23069 0.78288 1.04101 1.01308 1.86103 1.21453 1.26765 1.88622 1.18962 0.92202 0.84195 0.96254 1.21141 0.99962 0.91841 1.09262 1.19688 0.93808 0.94608 0.96863 1.20823 0.99278 0.94489 1.02677 1.20907 0.92935 0.98174 1.03579 1.19660 0.95039 0.92442 0.99198 1.19970 0.87944 1.03237 0.83095 1.45271 1.05950 1.81075 1.08222 1.15804 0.82185 0.77845 0.83191 1.90889 1.55268 1.58044 1.43321 1.47407 1.08121 1.76837 1.03780 1.21837 0.78428 0.99267 0.99402 1.22456 0.99889 0.95045 0.90480 1.62073 1.00152 1.52315 1.11464 1.19729 0.96994 0.87191 0.89225 1.21185 1.00214 1.10756 1.22490 0.91687 1.25001 0.98073 0.95047 0.96543 1.69968 1.37673 1.15258 1.30879 0.86434 0.84033 0.78215 0.78701 1.19581 1.21128 1.21036 1.22378 0.92834 0.95443 0.98247 1.21766 0.91314 1.00082 0.87339 1.20360 0.91394 0.98340 1.05512 0.92680 0.92576 0.88115 0.85444 0.90776 0.91539 0.91121 0.85531 0.90465 0.90697 0.76666 0.91153 0.89349 0.95720 0.88488 0.99128 0.95088 0.92957 0.95519 0.90164 0.91301 0.90632 0.84885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -2.96 10.50 -19.45 -0.20 -3.16 16 3 C 0.13 1.22 6.69 -39.22 -0.26 0.96 16 4 C -0.20 -1.61 8.69 -39.44 -0.34 -1.95 16 5 C -0.05 -0.38 5.88 -104.65 -0.62 -0.99 16 6 C -0.12 -0.60 10.01 36.00 0.36 -0.24 16 7 C -0.14 -1.14 9.35 -39.56 -0.37 -1.51 16 8 C -0.06 -0.58 5.25 -104.65 -0.55 -1.13 16 9 C 0.18 1.93 5.80 -5.19 -0.03 1.90 16 10 N -0.75 -9.01 5.46 -66.41 -0.36 -9.37 16 11 C 0.71 11.20 8.31 -86.91 -0.72 10.47 16 12 O -0.60 -11.39 15.83 5.29 0.08 -11.30 16 13 N -0.62 -9.76 3.00 -177.89 -0.53 -10.30 16 14 C 0.13 2.25 6.61 -3.36 -0.02 2.23 16 15 C 0.05 0.98 5.47 -3.47 -0.02 0.96 16 16 N -0.53 -11.16 4.62 -235.47 -1.09 -12.24 16 17 C 0.19 4.93 4.72 -4.98 -0.02 4.91 16 18 C -0.51 -13.98 8.41 -34.44 -0.29 -14.27 16 19 H 0.06 1.77 7.13 -52.49 -0.37 1.39 16 20 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 21 N -0.90 -26.46 13.29 55.43 0.74 -25.72 16 22 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 23 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 C 0.04 0.69 5.62 -3.70 -0.02 0.67 16 27 C 0.12 1.63 6.59 -3.60 -0.02 1.60 16 28 C -0.14 -1.35 9.64 -39.43 -0.38 -1.73 16 29 H 0.05 0.23 7.66 -51.93 -0.40 -0.17 16 30 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 31 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.13 0.75 6.30 -52.49 -0.33 0.42 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.28 8.08 -51.93 -0.42 -0.14 16 35 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 36 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.08 0.82 8.08 -51.93 -0.42 0.41 16 38 H 0.07 0.84 8.09 -51.93 -0.42 0.42 16 39 H 0.40 4.14 5.96 -40.82 -0.24 3.90 16 40 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.09 1.50 7.09 -51.93 -0.37 1.13 16 42 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.10 2.01 6.67 -51.93 -0.35 1.66 16 44 H -0.01 -0.25 8.13 -51.92 -0.42 -0.67 16 45 H 0.03 0.84 7.97 -51.93 -0.41 0.42 16 46 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 47 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.08 1.30 7.99 -51.93 -0.41 0.89 16 49 H 0.07 0.74 5.63 -51.93 -0.29 0.45 16 50 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 51 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 409.67 15.07 6.17 6.17 Total: -1.00 -33.40 409.67 -10.83 -44.23 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -8.20 Total: 0.82 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: -2.42 Total: 4.45 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: -1.25 Total: -57.64 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -0.12 Total: -14.46 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.40 -10.83 -44.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601587678.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.849 kcal (2) G-P(sol) polarization free energy of solvation -33.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds