Wall clock time and date at job start Wed Apr 1 2020 05:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35908 * 116.99967 * 2 1 4 4 C 1.38749 * 120.05605 * 0.02562 * 3 2 1 5 5 C 1.38119 * 119.94545 * 180.02562 * 4 3 2 6 6 C 1.50698 * 119.97201 * 179.97438 * 5 4 3 7 7 C 1.38285 * 120.05415 * 359.97012 * 5 4 3 8 8 C 1.38243 * 120.11357 * 0.02722 * 7 5 4 9 9 C 1.50704 * 119.97161 * 179.97438 * 8 7 5 10 10 N 1.46496 * 109.47101 * 269.97966 * 9 8 7 11 11 C 1.34777 * 119.99659 * 180.02562 * 10 9 8 12 12 O 1.21587 * 120.00278 * 354.91245 * 11 10 9 13 13 N 1.34781 * 119.99808 * 174.91782 * 11 10 9 14 14 C 1.47082 * 120.88015 * 184.71273 * 13 11 10 15 15 C 1.53700 * 108.27248 * 128.75444 * 14 13 11 16 16 N 1.46891 * 109.25813 * 54.08471 * 15 14 13 17 17 C 1.46901 * 111.00251 * 172.60335 * 16 15 14 18 18 C 1.50700 * 109.47284 * 294.30297 * 17 16 15 19 19 H 1.07996 * 119.99727 * 359.97438 * 18 17 16 20 20 C 1.37878 * 120.00043 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99895 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99783 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47063 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.47051 * 120.00140 * 22 20 18 25 25 H 1.48496 * 109.46947 * 240.00143 * 22 20 18 26 26 C 1.46897 * 111.27139 * 296.75045 * 16 15 14 27 27 C 1.47083 * 120.88274 * 4.99060 * 13 11 10 28 28 C 1.38163 * 120.05321 * 359.97438 * 8 7 5 29 29 H 1.08994 * 109.47279 * 300.00361 * 1 2 3 30 30 H 1.09004 * 109.46666 * 60.00163 * 1 2 3 31 31 H 1.09005 * 109.47070 * 180.02562 * 1 2 3 32 32 H 1.07997 * 120.02678 * 0.03907 * 4 3 2 33 33 H 1.08996 * 109.47591 * 269.97635 * 6 5 4 34 34 H 1.09001 * 109.47329 * 29.97959 * 6 5 4 35 35 H 1.09004 * 109.47302 * 149.97675 * 6 5 4 36 36 H 1.08001 * 119.94201 * 179.97438 * 7 5 4 37 37 H 1.08998 * 109.47292 * 29.98104 * 9 8 7 38 38 H 1.09002 * 109.46974 * 149.97949 * 9 8 7 39 39 H 0.97002 * 120.00579 * 359.97438 * 10 9 8 40 40 H 1.09001 * 109.62889 * 248.51898 * 14 13 11 41 41 H 1.09000 * 109.62802 * 9.10477 * 14 13 11 42 42 H 1.08993 * 109.64923 * 294.07432 * 15 14 13 43 43 H 1.09002 * 109.41577 * 173.94539 * 15 14 13 44 44 H 1.09007 * 109.46835 * 54.30276 * 17 16 15 45 45 H 1.08996 * 109.47561 * 174.29538 * 17 16 15 46 46 H 0.96997 * 119.99376 * 179.97438 * 21 20 18 47 47 H 1.08995 * 109.49367 * 303.15228 * 26 16 15 48 48 H 1.08998 * 109.49575 * 183.06270 * 26 16 15 49 49 H 1.09005 * 109.62862 * 350.89686 * 27 13 11 50 50 H 1.08999 * 109.62759 * 111.47465 * 27 13 11 51 51 H 1.08002 * 120.02318 * 179.74742 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9208 3.6048 0.0000 6 6 1.1019 4.8698 0.0000 7 6 3.3018 3.6758 -0.0004 8 6 4.0559 2.5171 -0.0009 9 6 5.5608 2.5983 -0.0020 10 7 6.0474 2.6240 -1.3835 11 6 7.3705 2.6947 -1.6307 12 8 8.1543 2.8304 -0.7112 13 7 7.8246 2.6152 -2.8972 14 6 9.2674 2.5866 -3.1814 15 6 9.5538 1.3890 -4.1011 16 7 8.6895 1.4705 -5.2860 17 6 9.0514 0.4448 -6.2734 18 6 10.4321 0.7267 -6.8076 19 1 10.9851 1.5825 -6.4497 20 6 10.9892 -0.1079 -7.7531 21 7 10.3155 -1.1498 -8.1892 22 14 12.7003 0.2420 -8.4158 23 1 13.2412 1.4645 -7.7689 24 1 13.5906 -0.9091 -8.1200 25 1 12.6296 0.4486 -9.8846 26 6 7.2707 1.3700 -4.9187 27 6 6.8906 2.5607 -4.0321 28 6 3.4310 1.2849 -0.0004 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 0.2128 2.3204 0.0016 33 1 0.9043 5.1749 -1.0276 34 1 0.1573 4.6912 0.5139 35 1 1.6515 5.6585 0.5138 36 1 3.7921 4.6381 -0.0013 37 1 5.8760 3.5067 0.5113 38 1 5.9718 1.7293 0.5119 39 1 5.4176 2.5894 -2.1204 40 1 9.5613 3.5117 -3.6775 41 1 9.8220 2.4753 -2.2496 42 1 9.3524 0.4604 -3.5671 43 1 10.5987 1.4117 -4.4109 44 1 9.0388 -0.5366 -5.7990 45 1 8.3341 0.4609 -7.0938 46 1 10.7073 -1.7368 -8.8546 47 1 7.1011 0.4417 -4.3733 48 1 6.6597 1.3790 -5.8213 49 1 5.8730 2.4323 -3.6630 50 1 6.9604 3.4834 -4.6083 51 1 4.0206 0.3800 -0.0049 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601587678.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:47:56 Heat of formation + Delta-G solvation = -49.303772 kcal Electronic energy + Delta-G solvation = -30105.870660 eV Core-core repulsion = 26004.885908 eV Total energy + Delta-G solvation = -4100.984752 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.58746 -41.11054 -39.25834 -38.70755 -36.13501 -35.98181 -34.40897 -33.58748 -32.15028 -31.43960 -29.95521 -28.75133 -27.81169 -27.29889 -26.57282 -24.55343 -23.92386 -22.79209 -22.25764 -21.78284 -20.55377 -19.28225 -18.51530 -18.35581 -17.48483 -17.41542 -17.00065 -16.75709 -16.66095 -16.57665 -16.03353 -15.84665 -15.41663 -15.33195 -15.08675 -15.06070 -14.53459 -14.51580 -14.37197 -14.08177 -13.97081 -13.67593 -13.48168 -13.12105 -13.09095 -12.99014 -12.78470 -12.74146 -12.59631 -12.37751 -12.36885 -12.31241 -12.15383 -11.88215 -11.78624 -11.73958 -11.38091 -11.17713 -10.62337 -10.29802 -9.78708 -9.60908 -9.17250 -9.04695 -8.20725 -6.30342 0.14059 0.41613 1.42243 1.43009 1.56467 1.63247 2.08148 2.33734 2.40936 2.62603 2.99709 3.11790 3.23062 3.56648 3.74890 3.93962 4.05306 4.05970 4.12232 4.19132 4.25504 4.28905 4.32950 4.38583 4.39720 4.43591 4.54065 4.56984 4.66913 4.71407 4.72923 4.82914 4.84894 4.85465 4.92659 4.95089 5.01812 5.17238 5.22250 5.23837 5.27062 5.39502 5.43777 5.49421 5.60085 5.64476 5.76698 5.89952 6.03439 6.25631 6.42890 6.57704 6.85562 6.89608 7.39459 7.47796 8.90667 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016061 B = 0.001987 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.979726 B =14085.803274 C =14988.748716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.340 6.340 3 C 0.117 3.883 4 C -0.202 4.202 5 C -0.050 4.050 6 C -0.115 4.115 7 C -0.140 4.140 8 C -0.064 4.064 9 C 0.185 3.815 10 N -0.731 5.731 11 C 0.706 3.294 12 O -0.631 6.631 13 N -0.628 5.628 14 C 0.146 3.854 15 C 0.056 3.944 16 N -0.537 5.537 17 C 0.208 3.792 18 C -0.521 4.521 19 H 0.066 0.934 20 C 0.000 4.000 21 N -0.935 5.935 22 Si 0.969 3.031 23 H -0.261 1.261 24 H -0.282 1.282 25 H -0.278 1.278 26 C 0.038 3.962 27 C 0.128 3.872 28 C -0.155 4.155 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.114 0.886 32 H 0.149 0.851 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.138 0.862 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.406 0.594 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.009 0.991 43 H 0.081 0.919 44 H -0.043 1.043 45 H 0.011 0.989 46 H 0.264 0.736 47 H 0.017 0.983 48 H 0.089 0.911 49 H 0.104 0.896 50 H 0.089 0.911 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.137 10.633 17.802 31.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.254 6.254 3 C 0.072 3.928 4 C -0.221 4.221 5 C -0.050 4.050 6 C -0.172 4.172 7 C -0.159 4.159 8 C -0.064 4.064 9 C 0.061 3.939 10 N -0.389 5.389 11 C 0.408 3.592 12 O -0.513 6.513 13 N -0.365 5.365 14 C 0.022 3.978 15 C -0.073 4.073 16 N -0.262 5.262 17 C 0.082 3.918 18 C -0.560 4.560 19 H 0.085 0.915 20 C -0.198 4.198 21 N -0.576 5.576 22 Si 0.794 3.206 23 H -0.185 1.185 24 H -0.207 1.207 25 H -0.204 1.204 26 C -0.091 4.091 27 C 0.005 3.995 28 C -0.175 4.175 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.132 0.868 32 H 0.167 0.833 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.156 0.844 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.245 0.755 40 H 0.099 0.901 41 H 0.105 0.895 42 H 0.027 0.973 43 H 0.099 0.901 44 H -0.025 1.025 45 H 0.029 0.971 46 H 0.073 0.927 47 H 0.035 0.965 48 H 0.107 0.893 49 H 0.122 0.878 50 H 0.107 0.893 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -23.431 10.840 18.151 31.559 hybrid contribution 0.364 -1.461 -0.631 1.632 sum -23.067 9.379 17.520 30.447 Atomic orbital electron populations 1.23338 0.76365 1.05485 1.02368 1.86070 1.23575 1.27051 1.88695 1.19109 0.92219 0.84899 0.96602 1.21408 1.01048 0.91341 1.08268 1.20014 0.93779 0.95582 0.95639 1.20881 0.99494 0.93313 1.03467 1.21082 0.93438 0.98158 1.03235 1.19467 0.93994 0.92760 1.00222 1.19978 0.88977 1.02851 0.82075 1.45177 1.04723 1.79696 1.09300 1.15921 0.82994 0.77637 0.82638 1.90865 1.56472 1.59636 1.44300 1.47414 1.07844 1.76830 1.04394 1.21603 0.79572 0.98075 0.98515 1.22382 0.98878 0.95803 0.90225 1.62002 1.02550 1.50097 1.11518 1.19381 0.96021 0.86851 0.89519 1.21498 1.01112 1.10772 1.22575 0.91537 1.25917 1.02270 0.94746 0.96827 1.70091 1.39627 1.16277 1.31562 0.85330 0.78865 0.78338 0.78065 1.18526 1.20746 1.20410 1.22517 0.90496 0.96775 0.99350 1.21826 0.92500 0.98865 0.86300 1.20388 0.92006 0.98258 1.06805 0.91424 0.91598 0.86751 0.83338 0.89963 0.90302 0.90415 0.84388 0.90268 0.91724 0.75515 0.90118 0.89530 0.97307 0.90063 1.02508 0.97100 0.92733 0.96505 0.89271 0.87764 0.89250 0.85910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.28 16 2 O -0.34 -6.14 10.50 -92.52 -0.97 -7.11 16 3 C 0.12 2.11 6.69 22.50 0.15 2.27 16 4 C -0.20 -2.77 8.69 22.36 0.19 -2.58 16 5 C -0.05 -0.64 5.88 -19.88 -0.12 -0.76 16 6 C -0.12 -0.83 10.01 71.24 0.71 -0.12 16 7 C -0.14 -2.07 9.35 22.28 0.21 -1.86 16 8 C -0.06 -1.13 5.25 -19.88 -0.10 -1.23 16 9 C 0.18 3.81 5.80 85.64 0.50 4.30 16 10 N -0.73 -16.64 5.46 -482.29 -2.63 -19.27 16 11 C 0.71 21.61 8.31 179.05 1.49 23.10 16 12 O -0.63 -23.88 15.83 -3.99 -0.06 -23.94 16 13 N -0.63 -18.86 3.00 -834.99 -2.51 -21.37 16 14 C 0.15 4.84 6.61 86.50 0.57 5.41 16 15 C 0.06 2.24 5.47 86.54 0.47 2.71 16 16 N -0.54 -22.64 4.62 -898.90 -4.15 -26.80 16 17 C 0.21 10.99 4.72 85.56 0.40 11.40 16 18 C -0.52 -29.18 8.41 25.60 0.22 -28.97 16 19 H 0.07 3.63 7.13 -2.91 -0.02 3.61 16 20 C 0.00 0.02 5.46 84.65 0.46 0.48 16 21 N -0.93 -56.14 13.29 21.45 0.28 -55.86 16 22 Si 0.97 44.16 29.54 68.60 2.03 46.19 16 23 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 24 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 25 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 26 C 0.04 1.26 5.62 86.39 0.49 1.75 16 27 C 0.13 3.23 6.59 86.35 0.57 3.80 16 28 C -0.16 -3.03 9.64 22.36 0.22 -2.82 16 29 H 0.07 0.42 7.66 -2.39 -0.02 0.41 16 30 H 0.07 0.45 7.66 -2.38 -0.02 0.43 16 31 H 0.11 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.15 1.31 6.30 -2.91 -0.02 1.29 16 33 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.08 0.39 8.08 -2.39 -0.02 0.38 16 35 H 0.08 0.48 8.09 -2.38 -0.02 0.46 16 36 H 0.14 1.68 8.06 -2.91 -0.02 1.65 16 37 H 0.08 1.62 8.08 -2.39 -0.02 1.60 16 38 H 0.06 1.47 8.09 -2.39 -0.02 1.46 16 39 H 0.41 7.58 5.96 -92.71 -0.55 7.03 16 40 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 41 H 0.09 2.93 7.09 -2.39 -0.02 2.92 16 42 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 43 H 0.08 3.45 6.67 -2.39 -0.02 3.44 16 44 H -0.04 -2.50 8.13 -2.38 -0.02 -2.52 16 45 H 0.01 0.61 7.97 -2.39 -0.02 0.59 16 46 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 47 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 48 H 0.09 2.83 7.99 -2.39 -0.02 2.81 16 49 H 0.10 1.92 5.63 -2.38 -0.01 1.90 16 50 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 51 H 0.12 2.53 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -73.40 409.67 -0.10 -73.50 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 0.38 Total: 16.50 kcal Atomic # 6 Polarization: 10.62 SS G_CDS: 7.54 Total: 18.16 kcal Atomic # 7 Polarization: -114.29 SS G_CDS: -9.01 Total: -123.30 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -1.03 Total: -31.05 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -73.40 -0.10 -73.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601587678.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.195 kcal (2) G-P(sol) polarization free energy of solvation -73.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds