Wall clock time and date at job start Wed Apr 1 2020 04:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35901 * 116.99835 * 2 1 4 4 C 1.38752 * 120.05606 * 0.02562 * 3 2 1 5 5 C 1.38132 * 119.94140 * 180.02562 * 4 3 2 6 6 C 1.38283 * 120.05756 * 359.97438 * 5 4 3 7 7 C 1.50703 * 119.94443 * 180.02562 * 6 5 4 8 8 N 1.46497 * 109.47014 * 260.00312 * 7 6 5 9 9 C 1.34772 * 119.99815 * 180.02562 * 8 7 6 10 10 O 1.21591 * 120.00299 * 354.91430 * 9 8 7 11 11 N 1.34776 * 120.00203 * 174.91661 * 9 8 7 12 12 C 1.47082 * 120.88636 * 184.71578 * 11 9 8 13 13 C 1.53686 * 108.27906 * 128.75333 * 12 11 9 14 14 N 1.46899 * 109.25805 * 54.08640 * 13 12 11 15 15 C 1.46900 * 111.00279 * 172.60528 * 14 13 12 16 16 C 1.50687 * 109.47374 * 294.30251 * 15 14 13 17 17 H 1.08001 * 120.00178 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00613 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99421 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00763 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46896 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47510 * 119.99900 * 20 18 16 23 23 H 1.48496 * 109.47564 * 240.00244 * 20 18 16 24 24 C 1.46899 * 111.26618 * 296.75638 * 14 13 12 25 25 C 1.47080 * 120.88270 * 4.99463 * 11 9 8 26 26 C 1.38247 * 120.11385 * 0.04518 * 6 5 4 27 27 C 1.50693 * 119.97431 * 179.97438 * 26 6 5 28 28 C 1.38168 * 120.05205 * 359.67758 * 26 6 5 29 29 H 1.09001 * 109.47253 * 299.99583 * 1 2 3 30 30 H 1.08998 * 109.47455 * 59.99814 * 1 2 3 31 31 H 1.09001 * 109.47174 * 179.97438 * 1 2 3 32 32 H 1.07998 * 120.02907 * 0.02562 * 4 3 2 33 33 H 1.07998 * 119.96951 * 180.02562 * 5 4 3 34 34 H 1.08998 * 109.46599 * 20.00105 * 7 6 5 35 35 H 1.08997 * 109.47046 * 140.00196 * 7 6 5 36 36 H 0.96999 * 120.00325 * 359.97438 * 8 7 6 37 37 H 1.09004 * 109.63059 * 248.52775 * 12 11 9 38 38 H 1.08999 * 109.62432 * 9.10347 * 12 11 9 39 39 H 1.09004 * 109.65034 * 294.08427 * 13 12 11 40 40 H 1.09001 * 109.42092 * 173.95012 * 13 12 11 41 41 H 1.09001 * 109.46604 * 54.30547 * 15 14 13 42 42 H 1.09001 * 109.47097 * 174.29861 * 15 14 13 43 43 H 0.97007 * 120.00084 * 179.97438 * 19 18 16 44 44 H 1.08996 * 109.49590 * 303.14192 * 24 14 13 45 45 H 1.09002 * 109.49127 * 183.06224 * 24 14 13 46 46 H 1.09012 * 109.62582 * 350.89630 * 25 11 9 47 47 H 1.09004 * 109.63235 * 111.47334 * 25 11 9 48 48 H 1.08997 * 109.47281 * 89.99996 * 27 26 6 49 49 H 1.09005 * 109.47155 * 209.99876 * 27 26 6 50 50 H 1.09000 * 109.47230 * 329.99719 * 27 26 6 51 51 H 1.08001 * 120.02966 * 180.29452 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9209 3.6048 0.0000 6 6 3.3019 3.6759 -0.0005 7 6 3.9860 5.0186 -0.0005 8 7 4.4208 5.3451 -1.3609 9 6 5.0608 6.5062 -1.6033 10 8 5.1958 7.3234 -0.7132 11 7 5.5512 6.7614 -2.8324 12 6 6.3415 7.9742 -3.0931 13 6 7.6470 7.5584 -3.7895 14 7 7.3278 6.7582 -4.9794 15 6 8.5351 6.4875 -5.7712 16 6 9.0683 7.7805 -6.3322 17 1 8.5608 8.7104 -6.1219 18 6 10.2040 7.7766 -7.1140 19 7 10.8223 6.6443 -7.3696 20 14 10.8645 9.3792 -7.8100 21 1 9.9940 10.5024 -7.3784 22 1 12.2451 9.6039 -7.3112 23 1 10.8798 9.3059 -9.2930 24 6 6.6466 5.5090 -4.6143 25 6 5.3053 5.8377 -3.9502 26 6 4.0560 2.5172 -0.0015 27 6 5.5607 2.5983 -0.0026 28 6 3.4311 1.2849 0.0048 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2127 2.3203 0.0014 33 1 1.3340 4.5114 0.0008 34 1 3.2906 5.7806 0.3514 35 1 4.8527 4.9848 0.6596 36 1 4.2487 4.7254 -2.0870 37 1 5.7771 8.6475 -3.7383 38 1 6.5702 8.4717 -2.1507 39 1 8.2549 6.9663 -3.1054 40 1 8.1984 8.4500 -4.0880 41 1 9.2915 6.0282 -5.1349 42 1 8.2888 5.8107 -6.5893 43 1 11.6211 6.6414 -7.9200 44 1 7.2684 4.9454 -3.9187 45 1 6.4724 4.9142 -5.5110 46 1 4.8484 4.9219 -3.5747 47 1 4.6431 6.3095 -4.6763 48 1 5.9244 2.6175 1.0247 49 1 5.9710 1.7292 -0.5171 50 1 5.8753 3.5066 -0.5165 51 1 4.0206 0.3800 0.0089 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601596683.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:51 Heat of formation + Delta-G solvation = -25.401091 kcal Electronic energy + Delta-G solvation = -30384.600273 eV Core-core repulsion = 26284.652019 eV Total energy + Delta-G solvation = -4099.948254 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.76017 -40.10663 -38.45937 -37.52250 -34.79059 -34.35834 -32.88449 -32.40291 -31.35130 -30.49702 -28.66503 -27.95843 -26.94019 -25.85299 -25.08842 -23.16149 -22.53677 -22.12979 -21.05589 -20.66493 -19.31365 -18.14794 -17.99420 -16.91948 -16.47951 -16.22512 -16.11238 -15.60142 -15.44459 -14.85157 -14.64288 -14.55798 -14.37263 -14.25730 -13.85549 -13.77188 -13.70822 -13.64350 -13.46452 -13.23804 -12.59743 -12.57257 -12.34897 -12.25313 -12.18229 -11.98798 -11.63183 -11.31712 -11.27782 -11.16910 -11.12250 -10.84130 -10.72957 -10.59400 -10.50579 -9.99990 -9.84987 -9.26269 -9.15138 -9.13452 -8.52400 -8.48314 -8.30273 -7.31672 -6.06218 -4.07794 0.91368 0.98257 2.76761 2.84218 3.29743 3.32687 3.37378 3.37790 3.42180 4.03072 4.36886 4.38809 4.40251 4.50609 4.63795 4.70202 4.79332 4.83632 4.97313 5.00119 5.04080 5.22842 5.28948 5.32023 5.37814 5.37862 5.42114 5.45717 5.54914 5.64790 5.68545 5.77635 5.84644 5.94366 5.95696 6.00514 6.05607 6.20644 6.28617 6.38059 6.42833 6.46103 6.57181 6.71004 6.97961 7.08425 7.22582 7.28723 7.75038 8.00936 8.03746 8.13120 8.48143 8.70127 8.99939 9.56881 11.04638 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019357 B = 0.001972 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.192592 B =14192.829778 C =14897.956602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.318 6.318 3 C 0.137 3.863 4 C -0.218 4.218 5 C -0.054 4.054 6 C -0.147 4.147 7 C 0.186 3.814 8 N -0.746 5.746 9 C 0.707 3.293 10 O -0.597 6.597 11 N -0.625 5.625 12 C 0.133 3.867 13 C 0.051 3.949 14 N -0.535 5.535 15 C 0.193 3.807 16 C -0.508 4.508 17 H 0.065 0.935 18 C 0.055 3.945 19 N -0.898 5.898 20 Si 0.898 3.102 21 H -0.271 1.271 22 H -0.285 1.285 23 H -0.284 1.284 24 C 0.041 3.959 25 C 0.119 3.881 26 C -0.023 4.023 27 C -0.125 4.125 28 C -0.156 4.156 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.100 0.900 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.396 0.604 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.024 0.976 40 H 0.097 0.903 41 H -0.009 1.009 42 H 0.031 0.969 43 H 0.261 0.739 44 H 0.026 0.974 45 H 0.080 0.920 46 H 0.069 0.931 47 H 0.075 0.925 48 H 0.077 0.923 49 H 0.071 0.929 50 H 0.077 0.923 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.551 -12.387 15.681 28.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.231 6.231 3 C 0.091 3.909 4 C -0.236 4.236 5 C -0.073 4.073 6 C -0.147 4.147 7 C 0.062 3.938 8 N -0.405 5.405 9 C 0.409 3.591 10 O -0.476 6.476 11 N -0.362 5.362 12 C 0.010 3.990 13 C -0.078 4.078 14 N -0.260 5.260 15 C 0.069 3.931 16 C -0.547 4.547 17 H 0.083 0.917 18 C -0.146 4.146 19 N -0.538 5.538 20 Si 0.726 3.274 21 H -0.196 1.196 22 H -0.211 1.211 23 H -0.210 1.210 24 C -0.089 4.089 25 C -0.005 4.005 26 C -0.024 4.024 27 C -0.181 4.181 28 C -0.174 4.174 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.118 0.882 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.233 0.767 37 H 0.088 0.912 38 H 0.106 0.894 39 H 0.043 0.957 40 H 0.115 0.885 41 H 0.009 0.991 42 H 0.049 0.951 43 H 0.070 0.930 44 H 0.045 0.955 45 H 0.098 0.902 46 H 0.087 0.913 47 H 0.093 0.907 48 H 0.095 0.905 49 H 0.090 0.910 50 H 0.096 0.904 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -20.511 -11.772 15.957 28.530 hybrid contribution 0.570 -0.079 -0.413 0.708 sum -19.942 -11.851 15.544 27.924 Atomic orbital electron populations 1.23075 0.78225 1.04044 1.01468 1.86078 1.21532 1.26984 1.88512 1.19059 0.92310 0.84156 0.95332 1.21204 1.00075 0.92221 1.10120 1.20879 0.93655 0.97241 0.95500 1.19694 0.93523 0.94382 1.07129 1.19874 0.98553 0.91953 0.83405 1.45365 1.63552 1.21017 1.10582 1.15832 0.78520 0.81949 0.82829 1.90890 1.64729 1.47360 1.44593 1.47411 1.55842 1.25415 1.07513 1.21830 0.91513 0.85203 1.00404 1.22452 0.94636 0.99731 0.91010 1.62073 1.29037 1.15928 1.18952 1.19727 0.84274 0.97395 0.91740 1.21183 1.09346 0.93583 1.30560 0.91694 1.24998 0.96730 0.96502 0.96414 1.69971 1.19597 1.25466 1.38734 0.86435 0.78671 0.83559 0.78720 1.19591 1.21128 1.21036 1.22375 0.94156 0.93351 0.98985 1.21762 0.98103 0.92144 0.88498 1.19638 0.96247 0.91452 0.95016 1.20947 0.90335 1.03796 1.03059 1.20299 0.91287 0.98189 1.07670 0.92575 0.92507 0.88170 0.85370 0.85413 0.91028 0.90871 0.76742 0.91191 0.89368 0.95740 0.88512 0.99121 0.95085 0.92956 0.95533 0.90179 0.91314 0.90675 0.90486 0.91000 0.90443 0.85010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.32 -2.73 10.50 -19.43 -0.20 -2.93 16 3 C 0.14 1.23 6.69 -39.21 -0.26 0.97 16 4 C -0.22 -1.71 9.04 -39.43 -0.36 -2.07 16 5 C -0.05 -0.44 9.66 -39.60 -0.38 -0.83 16 6 C -0.15 -1.33 5.25 -104.60 -0.55 -1.88 16 7 C 0.19 1.93 4.93 -5.19 -0.03 1.91 16 8 N -0.75 -8.70 4.79 -66.42 -0.32 -9.02 16 9 C 0.71 10.91 8.31 -86.92 -0.72 10.18 16 10 O -0.60 -11.22 15.83 5.29 0.08 -11.13 16 11 N -0.62 -9.56 3.00 -177.91 -0.53 -10.10 16 12 C 0.13 2.21 6.61 -3.37 -0.02 2.19 16 13 C 0.05 0.98 5.47 -3.47 -0.02 0.96 16 14 N -0.53 -11.00 4.62 -235.48 -1.09 -12.09 16 15 C 0.19 4.89 4.72 -4.98 -0.02 4.86 16 16 C -0.51 -13.90 8.41 -34.45 -0.29 -14.19 16 17 H 0.06 1.75 7.13 -52.49 -0.37 1.38 16 18 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 19 N -0.90 -26.30 13.29 55.43 0.74 -25.56 16 20 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 21 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 C 0.04 0.68 5.62 -3.70 -0.02 0.66 16 25 C 0.12 1.59 6.59 -3.60 -0.02 1.57 16 26 C -0.02 -0.21 5.88 -104.65 -0.62 -0.82 16 27 C -0.12 -1.04 9.26 36.00 0.33 -0.70 16 28 C -0.16 -1.41 9.64 -39.43 -0.38 -1.79 16 29 H 0.06 0.21 7.66 -51.93 -0.40 -0.18 16 30 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 31 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.13 0.74 6.30 -52.49 -0.33 0.41 16 33 H 0.13 0.86 8.03 -52.49 -0.42 0.44 16 34 H 0.07 0.76 8.00 -51.93 -0.42 0.35 16 35 H 0.07 0.81 7.28 -51.93 -0.38 0.43 16 36 H 0.40 4.02 5.96 -40.82 -0.24 3.77 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.09 1.48 7.09 -51.93 -0.37 1.11 16 39 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.10 1.98 6.67 -51.93 -0.35 1.63 16 41 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 42 H 0.03 0.83 7.97 -51.93 -0.41 0.42 16 43 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 44 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.08 1.28 7.99 -51.93 -0.41 0.86 16 46 H 0.07 0.72 5.63 -51.92 -0.29 0.43 16 47 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 48 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 50 H 0.08 0.74 6.33 -51.93 -0.33 0.41 16 51 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 LS Contribution 405.37 15.07 6.11 6.11 Total: -1.00 -32.95 405.37 -10.76 -43.71 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -8.06 Total: 1.11 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -2.46 Total: 3.58 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: -1.20 Total: -56.77 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: -0.12 Total: -14.06 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.95 -10.76 -43.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601596683.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.307 kcal (2) G-P(sol) polarization free energy of solvation -32.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds