Wall clock time and date at job start Wed Apr 1 2020 04:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35901 * 116.99835 * 2 1 4 4 C 1.38752 * 120.05606 * 0.02562 * 3 2 1 5 5 C 1.38132 * 119.94140 * 180.02562 * 4 3 2 6 6 C 1.38283 * 120.05756 * 359.97438 * 5 4 3 7 7 C 1.50703 * 119.94443 * 180.02562 * 6 5 4 8 8 N 1.46497 * 109.47014 * 260.00312 * 7 6 5 9 9 C 1.34772 * 119.99815 * 180.02562 * 8 7 6 10 10 O 1.21591 * 120.00299 * 354.91430 * 9 8 7 11 11 N 1.34776 * 120.00203 * 174.91661 * 9 8 7 12 12 C 1.47082 * 120.88636 * 184.71578 * 11 9 8 13 13 C 1.53686 * 108.27906 * 128.75333 * 12 11 9 14 14 N 1.46899 * 109.25805 * 54.08640 * 13 12 11 15 15 C 1.46900 * 111.00279 * 172.60528 * 14 13 12 16 16 C 1.50687 * 109.47374 * 294.30251 * 15 14 13 17 17 H 1.08001 * 120.00178 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00613 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99421 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00763 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46896 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47510 * 119.99900 * 20 18 16 23 23 H 1.48496 * 109.47564 * 240.00244 * 20 18 16 24 24 C 1.46899 * 111.26618 * 296.75638 * 14 13 12 25 25 C 1.47080 * 120.88270 * 4.99463 * 11 9 8 26 26 C 1.38247 * 120.11385 * 0.04518 * 6 5 4 27 27 C 1.50693 * 119.97431 * 179.97438 * 26 6 5 28 28 C 1.38168 * 120.05205 * 359.67758 * 26 6 5 29 29 H 1.09001 * 109.47253 * 299.99583 * 1 2 3 30 30 H 1.08998 * 109.47455 * 59.99814 * 1 2 3 31 31 H 1.09001 * 109.47174 * 179.97438 * 1 2 3 32 32 H 1.07998 * 120.02907 * 0.02562 * 4 3 2 33 33 H 1.07998 * 119.96951 * 180.02562 * 5 4 3 34 34 H 1.08998 * 109.46599 * 20.00105 * 7 6 5 35 35 H 1.08997 * 109.47046 * 140.00196 * 7 6 5 36 36 H 0.96999 * 120.00325 * 359.97438 * 8 7 6 37 37 H 1.09004 * 109.63059 * 248.52775 * 12 11 9 38 38 H 1.08999 * 109.62432 * 9.10347 * 12 11 9 39 39 H 1.09004 * 109.65034 * 294.08427 * 13 12 11 40 40 H 1.09001 * 109.42092 * 173.95012 * 13 12 11 41 41 H 1.09001 * 109.46604 * 54.30547 * 15 14 13 42 42 H 1.09001 * 109.47097 * 174.29861 * 15 14 13 43 43 H 0.97007 * 120.00084 * 179.97438 * 19 18 16 44 44 H 1.08996 * 109.49590 * 303.14192 * 24 14 13 45 45 H 1.09002 * 109.49127 * 183.06224 * 24 14 13 46 46 H 1.09012 * 109.62582 * 350.89630 * 25 11 9 47 47 H 1.09004 * 109.63235 * 111.47334 * 25 11 9 48 48 H 1.08997 * 109.47281 * 89.99996 * 27 26 6 49 49 H 1.09005 * 109.47155 * 209.99876 * 27 26 6 50 50 H 1.09000 * 109.47230 * 329.99719 * 27 26 6 51 51 H 1.08001 * 120.02966 * 180.29452 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9209 3.6048 0.0000 6 6 3.3019 3.6759 -0.0005 7 6 3.9860 5.0186 -0.0005 8 7 4.4208 5.3451 -1.3609 9 6 5.0608 6.5062 -1.6033 10 8 5.1958 7.3234 -0.7132 11 7 5.5512 6.7614 -2.8324 12 6 6.3415 7.9742 -3.0931 13 6 7.6470 7.5584 -3.7895 14 7 7.3278 6.7582 -4.9794 15 6 8.5351 6.4875 -5.7712 16 6 9.0683 7.7805 -6.3322 17 1 8.5608 8.7104 -6.1219 18 6 10.2040 7.7766 -7.1140 19 7 10.8223 6.6443 -7.3696 20 14 10.8645 9.3792 -7.8100 21 1 9.9940 10.5024 -7.3784 22 1 12.2451 9.6039 -7.3112 23 1 10.8798 9.3059 -9.2930 24 6 6.6466 5.5090 -4.6143 25 6 5.3053 5.8377 -3.9502 26 6 4.0560 2.5172 -0.0015 27 6 5.5607 2.5983 -0.0026 28 6 3.4311 1.2849 0.0048 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2127 2.3203 0.0014 33 1 1.3340 4.5114 0.0008 34 1 3.2906 5.7806 0.3514 35 1 4.8527 4.9848 0.6596 36 1 4.2487 4.7254 -2.0870 37 1 5.7771 8.6475 -3.7383 38 1 6.5702 8.4717 -2.1507 39 1 8.2549 6.9663 -3.1054 40 1 8.1984 8.4500 -4.0880 41 1 9.2915 6.0282 -5.1349 42 1 8.2888 5.8107 -6.5893 43 1 11.6211 6.6414 -7.9200 44 1 7.2684 4.9454 -3.9187 45 1 6.4724 4.9142 -5.5110 46 1 4.8484 4.9219 -3.5747 47 1 4.6431 6.3095 -4.6763 48 1 5.9244 2.6175 1.0247 49 1 5.9710 1.7292 -0.5171 50 1 5.8753 3.5066 -0.5165 51 1 4.0206 0.3800 0.0089 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601596683.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:50 Heat of formation + Delta-G solvation = -46.641837 kcal Electronic energy + Delta-G solvation = -30385.521341 eV Core-core repulsion = 26284.652019 eV Total energy + Delta-G solvation = -4100.869322 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.61455 -41.08624 -39.33476 -38.76373 -35.97281 -35.77704 -34.35962 -33.51972 -32.37023 -31.63530 -29.99335 -28.94113 -27.47913 -27.30521 -26.19951 -24.51638 -23.90509 -23.19485 -22.21138 -21.63065 -20.54819 -19.23217 -18.69055 -18.48761 -17.58314 -17.41095 -16.82336 -16.65292 -16.57159 -16.30117 -15.99546 -15.67579 -15.36020 -15.34466 -15.25714 -15.00289 -14.73038 -14.49138 -14.39343 -14.21779 -14.04738 -13.57304 -13.43882 -13.12071 -13.09769 -13.04784 -12.75820 -12.72801 -12.59358 -12.36040 -12.34134 -12.29412 -12.13036 -11.86138 -11.75003 -11.73266 -11.36428 -11.15661 -10.61602 -10.25619 -9.78368 -9.58306 -9.16810 -9.02606 -8.20122 -6.29583 0.24713 0.34599 1.42430 1.43425 1.56629 1.66266 2.11172 2.34752 2.41354 2.63873 3.01857 3.12522 3.24547 3.67786 3.78709 3.90586 3.95702 4.06853 4.12554 4.15832 4.26768 4.28878 4.34685 4.40638 4.42825 4.45177 4.56117 4.62606 4.69914 4.72864 4.74141 4.75994 4.83724 4.86554 4.96417 5.00123 5.03131 5.13928 5.18690 5.23939 5.31887 5.35520 5.44034 5.46242 5.63973 5.65256 5.76192 5.92821 6.04568 6.27261 6.42339 6.59374 6.86394 6.93115 7.40202 7.51288 8.91128 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019357 B = 0.001972 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.192592 B =14192.829778 C =14897.956602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.336 6.336 3 C 0.129 3.871 4 C -0.217 4.217 5 C -0.054 4.054 6 C -0.153 4.153 7 C 0.190 3.810 8 N -0.729 5.729 9 C 0.706 3.294 10 O -0.632 6.632 11 N -0.628 5.628 12 C 0.146 3.854 13 C 0.057 3.943 14 N -0.538 5.538 15 C 0.208 3.792 16 C -0.522 4.522 17 H 0.066 0.934 18 C 0.001 3.999 19 N -0.934 5.934 20 Si 0.968 3.032 21 H -0.262 1.262 22 H -0.281 1.281 23 H -0.279 1.279 24 C 0.038 3.962 25 C 0.128 3.872 26 C -0.026 4.026 27 C -0.122 4.122 28 C -0.169 4.169 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.117 0.883 32 H 0.150 0.850 33 H 0.143 0.857 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.405 0.595 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.010 0.990 40 H 0.080 0.920 41 H -0.041 1.041 42 H 0.011 0.989 43 H 0.264 0.736 44 H 0.019 0.981 45 H 0.088 0.912 46 H 0.105 0.895 47 H 0.086 0.914 48 H 0.082 0.918 49 H 0.078 0.922 50 H 0.063 0.937 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.777 -12.404 15.865 30.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.250 6.250 3 C 0.083 3.917 4 C -0.235 4.235 5 C -0.072 4.072 6 C -0.153 4.153 7 C 0.067 3.933 8 N -0.388 5.388 9 C 0.408 3.592 10 O -0.514 6.514 11 N -0.365 5.365 12 C 0.022 3.978 13 C -0.072 4.072 14 N -0.262 5.262 15 C 0.082 3.918 16 C -0.560 4.560 17 H 0.084 0.916 18 C -0.197 4.197 19 N -0.575 5.575 20 Si 0.793 3.207 21 H -0.186 1.186 22 H -0.207 1.207 23 H -0.205 1.205 24 C -0.091 4.091 25 C 0.005 3.995 26 C -0.027 4.027 27 C -0.179 4.179 28 C -0.188 4.188 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.135 0.865 32 H 0.168 0.832 33 H 0.161 0.839 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.244 0.756 37 H 0.097 0.903 38 H 0.105 0.895 39 H 0.028 0.972 40 H 0.098 0.902 41 H -0.024 1.024 42 H 0.029 0.971 43 H 0.073 0.927 44 H 0.038 0.962 45 H 0.106 0.894 46 H 0.123 0.877 47 H 0.105 0.895 48 H 0.100 0.900 49 H 0.097 0.903 50 H 0.082 0.918 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -22.783 -11.827 16.147 30.326 hybrid contribution 1.194 -0.198 -0.416 1.280 sum -21.590 -12.025 15.730 29.295 Atomic orbital electron populations 1.23353 0.76346 1.05572 1.02379 1.86058 1.23565 1.26961 1.88403 1.19242 0.92485 0.84798 0.95128 1.21436 1.01201 0.91604 1.09276 1.21078 0.93338 0.98076 0.94737 1.19576 0.93969 0.93451 1.08352 1.19872 0.98301 0.92787 0.82371 1.45266 1.62245 1.19722 1.11533 1.15939 0.78593 0.82463 0.82215 1.90867 1.66142 1.48772 1.45580 1.47410 1.55665 1.25290 1.08136 1.21587 0.90307 0.85893 0.99996 1.22369 0.96014 0.98539 0.90276 1.61994 1.26660 1.18025 1.19559 1.19376 0.85266 0.96007 0.91122 1.21501 1.09649 0.94275 1.30555 0.91600 1.25899 0.97031 0.99998 0.96757 1.70091 1.20147 1.27731 1.39532 0.85343 0.77984 0.79396 0.77955 1.18584 1.20735 1.20462 1.22509 0.95308 0.91683 0.99577 1.21812 0.96172 0.93444 0.88053 1.19679 0.96393 0.91533 0.95108 1.20918 0.90270 1.03363 1.03315 1.20425 0.91812 0.98335 1.08210 0.91537 0.91628 0.86517 0.83216 0.83877 0.91053 0.91701 0.75636 0.90335 0.89545 0.97167 0.90192 1.02372 0.97117 0.92748 0.96229 0.89381 0.87739 0.89531 0.89993 0.90320 0.91776 0.84705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 113.37 1.11 1.24 16 2 O -0.34 -5.23 10.50 -92.43 -0.97 -6.20 16 3 C 0.13 2.11 6.69 22.51 0.15 2.26 16 4 C -0.22 -2.90 9.04 22.37 0.20 -2.70 16 5 C -0.05 -0.76 9.66 22.26 0.22 -0.54 16 6 C -0.15 -2.52 5.25 -19.85 -0.10 -2.62 16 7 C 0.19 3.71 4.93 85.63 0.42 4.13 16 8 N -0.73 -15.74 4.79 -482.31 -2.31 -18.06 16 9 C 0.71 20.87 8.31 179.06 1.49 22.36 16 10 O -0.63 -23.35 15.83 -4.00 -0.06 -23.41 16 11 N -0.63 -18.36 3.00 -835.04 -2.51 -20.86 16 12 C 0.15 4.75 6.61 86.50 0.57 5.32 16 13 C 0.06 2.23 5.47 86.53 0.47 2.70 16 14 N -0.54 -22.31 4.62 -898.93 -4.15 -26.46 16 15 C 0.21 10.86 4.72 85.55 0.40 11.27 16 16 C -0.52 -28.99 8.41 25.60 0.22 -28.78 16 17 H 0.07 3.58 7.13 -2.91 -0.02 3.56 16 18 C 0.00 0.06 5.46 84.65 0.46 0.52 16 19 N -0.93 -55.72 13.29 21.45 0.28 -55.43 16 20 Si 0.97 43.93 29.54 68.60 2.03 45.96 16 21 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 22 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 23 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 24 C 0.04 1.25 5.62 86.38 0.49 1.73 16 25 C 0.13 3.16 6.59 86.35 0.57 3.72 16 26 C -0.03 -0.45 5.88 -19.88 -0.12 -0.56 16 27 C -0.12 -1.95 9.26 71.23 0.66 -1.29 16 28 C -0.17 -2.88 9.64 22.37 0.22 -2.67 16 29 H 0.07 0.34 7.66 -2.39 -0.02 0.32 16 30 H 0.07 0.36 7.66 -2.39 -0.02 0.34 16 31 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.15 1.27 6.30 -2.91 -0.02 1.25 16 33 H 0.14 1.53 8.03 -2.91 -0.02 1.51 16 34 H 0.07 1.42 8.00 -2.39 -0.02 1.41 16 35 H 0.06 1.39 7.28 -2.39 -0.02 1.38 16 36 H 0.41 7.19 5.96 -92.71 -0.55 6.64 16 37 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 38 H 0.09 2.88 7.09 -2.39 -0.02 2.86 16 39 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 40 H 0.08 3.36 6.67 -2.39 -0.02 3.34 16 41 H -0.04 -2.39 8.12 -2.39 -0.02 -2.40 16 42 H 0.01 0.60 7.97 -2.39 -0.02 0.58 16 43 H 0.26 14.78 8.31 -92.70 -0.77 14.01 16 44 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.09 2.73 7.99 -2.39 -0.02 2.71 16 46 H 0.10 1.85 5.63 -2.38 -0.01 1.83 16 47 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 48 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 49 H 0.08 1.12 8.09 -2.38 -0.02 1.10 16 50 H 0.06 1.19 6.33 -2.39 -0.02 1.17 16 51 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -71.86 405.37 0.11 -71.75 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 0.38 Total: 16.60 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: 7.42 Total: 16.12 kcal Atomic # 7 Polarization: -112.13 SS G_CDS: -8.69 Total: -120.81 kcal Atomic # 8 Polarization: -28.58 SS G_CDS: -1.03 Total: -29.62 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -71.86 0.11 -71.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601596683.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.106 kcal (2) G-P(sol) polarization free energy of solvation -71.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds