Wall clock time and date at job start Wed Apr 1 2020 05:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35896 * 116.99997 * 2 1 4 4 C 1.38750 * 120.05766 * 359.97438 * 3 2 1 5 5 C 1.38116 * 119.94452 * 180.02562 * 4 3 2 6 6 C 1.38287 * 120.06092 * 359.72353 * 5 4 3 7 7 C 1.38244 * 120.10592 * 0.55028 * 6 5 4 8 8 C 1.50704 * 119.97377 * 179.72348 * 7 6 5 9 9 N 1.46500 * 109.47102 * 259.72656 * 8 7 6 10 10 C 1.34777 * 119.99655 * 179.97438 * 9 8 7 11 11 O 1.21585 * 120.00078 * 5.08351 * 10 9 8 12 12 N 1.34777 * 119.99639 * 185.08598 * 10 9 8 13 13 C 1.47081 * 120.87929 * 175.00697 * 12 10 9 14 14 C 1.53239 * 108.51873 * 231.20054 * 13 12 10 15 15 N 1.46895 * 109.34248 * 306.17089 * 14 13 12 16 16 C 1.46898 * 111.00143 * 187.25467 * 15 14 13 17 17 C 1.50699 * 109.47455 * 169.99984 * 16 15 14 18 18 H 1.08003 * 119.99363 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00158 * 179.72133 * 17 16 15 20 20 N 1.31516 * 120.00253 * 0.27907 * 19 17 16 21 21 Si 1.86798 * 120.00168 * 180.27249 * 19 17 16 22 22 H 1.48507 * 109.46708 * 60.00286 * 21 19 17 23 23 H 1.48501 * 109.47519 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47121 * 300.00523 * 21 19 17 25 25 C 1.46897 * 111.26921 * 63.10247 * 15 14 13 26 26 C 1.47078 * 120.88358 * 355.02107 * 12 10 9 27 27 C 1.38171 * 120.05833 * 359.45282 * 7 6 5 28 28 C 1.50694 * 120.02961 * 180.25429 * 27 7 6 29 29 H 1.09001 * 109.47046 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47015 * 299.99177 * 1 2 3 31 31 H 1.08999 * 109.47167 * 59.99875 * 1 2 3 32 32 H 1.08001 * 120.02700 * 0.03848 * 4 3 2 33 33 H 1.08002 * 119.97417 * 180.02562 * 5 4 3 34 34 H 1.07998 * 119.95260 * 180.29940 * 6 5 4 35 35 H 1.09006 * 109.47081 * 139.72495 * 8 7 6 36 36 H 1.09003 * 109.47009 * 19.72846 * 8 7 6 37 37 H 0.96995 * 119.99868 * 0.02562 * 9 8 7 38 38 H 1.08999 * 109.62946 * 111.49200 * 13 12 10 39 39 H 1.09000 * 109.78911 * 351.00348 * 13 12 10 40 40 H 1.08999 * 109.49149 * 186.20701 * 14 13 12 41 41 H 1.09002 * 109.48916 * 66.13276 * 14 13 12 42 42 H 1.08999 * 109.47130 * 49.99604 * 16 15 14 43 43 H 1.09004 * 109.46764 * 290.00180 * 16 15 14 44 44 H 0.96996 * 120.00268 * 180.02562 * 20 19 17 45 45 H 1.09004 * 109.49209 * 56.85405 * 25 15 14 46 46 H 1.09001 * 109.49155 * 176.93324 * 25 15 14 47 47 H 1.08992 * 109.62939 * 248.50761 * 26 12 10 48 48 H 1.09005 * 109.62604 * 9.09078 * 26 12 10 49 49 H 1.09004 * 109.47670 * 90.00074 * 28 27 7 50 50 H 1.09005 * 109.46855 * 209.99808 * 28 27 7 51 51 H 1.08999 * 109.47110 * 329.99292 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9209 3.6046 -0.0011 6 6 3.3019 3.6758 0.0047 7 6 4.0560 2.5171 -0.0005 8 6 5.5609 2.5981 -0.0004 9 7 6.0614 2.3843 -1.3606 10 6 7.3869 2.4132 -1.6031 11 8 8.1714 2.5243 -0.6808 12 7 7.8427 2.3190 -2.8679 13 6 9.2763 2.4576 -3.1660 14 6 9.4434 3.4945 -4.2818 15 7 8.6046 3.1166 -5.4269 16 6 8.8651 3.9878 -6.5807 17 6 8.1787 3.4265 -7.7992 18 1 7.6058 2.5140 -7.7239 19 6 8.2769 4.0811 -9.0086 20 7 8.9741 5.1925 -9.1001 21 14 7.4197 3.3894 -10.5173 22 1 5.9578 3.3169 -10.2663 23 1 7.6791 4.2727 -11.6826 24 1 7.9412 2.0285 -10.8025 25 6 7.1796 3.1274 -5.0702 26 6 6.9197 2.0753 -3.9868 27 6 3.4312 1.2847 0.0000 28 6 4.2538 0.0221 0.0002 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5138 -0.8900 32 1 0.2128 2.3203 -0.0003 33 1 1.3341 4.5113 -0.0011 34 1 3.7923 4.6380 0.0092 35 1 5.9660 1.8318 0.6605 36 1 5.8717 3.5821 0.3506 37 1 5.4389 2.2226 -2.0866 38 1 9.6763 1.4984 -3.4947 39 1 9.8081 2.7900 -2.2745 40 1 10.4878 3.5300 -4.5919 41 1 9.1388 4.4750 -3.9156 42 1 9.9388 4.0409 -6.7606 43 1 8.4812 4.9871 -6.3753 44 1 9.0428 5.6532 -9.9509 45 1 6.9065 4.1130 -4.6931 46 1 6.5822 2.8966 -5.9522 47 1 7.0932 1.0795 -4.3944 48 1 5.8905 2.1567 -3.6369 49 1 4.4524 -0.2821 1.0279 50 1 3.7062 -0.7683 -0.5133 51 1 5.1976 0.2033 -0.5140 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601623166.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:48:00 Heat of formation + Delta-G solvation = -24.092920 kcal Electronic energy + Delta-G solvation = -30610.242735 eV Core-core repulsion = 26510.351207 eV Total energy + Delta-G solvation = -4099.891527 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.80142 -40.09805 -38.24549 -37.49794 -34.95925 -34.35282 -32.99692 -32.38694 -31.14678 -30.43306 -28.27532 -27.99685 -27.24438 -26.04153 -25.02415 -23.25297 -22.14152 -22.06828 -21.17900 -20.69265 -19.34079 -18.29416 -17.58434 -16.88702 -16.43022 -16.25630 -16.06905 -15.99285 -15.42662 -14.96610 -14.55923 -14.52061 -14.38736 -14.19673 -13.95085 -13.70061 -13.66176 -13.51341 -13.24911 -13.12624 -12.59514 -12.43806 -12.39266 -12.23354 -12.21246 -11.88638 -11.59715 -11.43808 -11.27148 -11.07778 -11.04036 -10.98012 -10.73783 -10.63339 -10.53779 -9.98876 -9.85114 -9.29855 -9.15129 -9.06917 -8.48444 -8.45499 -8.30212 -7.31163 -6.06462 -4.08627 0.84395 1.09968 2.76587 2.89419 3.30298 3.33053 3.35123 3.37331 3.40858 4.04412 4.32879 4.38402 4.40908 4.63262 4.69088 4.74283 4.81064 4.83912 4.96365 5.04963 5.09760 5.27250 5.30514 5.35478 5.42219 5.43503 5.48087 5.50149 5.52010 5.60055 5.68233 5.79433 5.88229 5.97720 6.01427 6.09968 6.10225 6.27204 6.31526 6.38670 6.44886 6.46293 6.48395 6.67753 7.02239 7.08207 7.23133 7.28883 7.73579 8.01207 8.03753 8.13452 8.47773 8.69880 8.98279 9.55816 11.04278 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011354 B = 0.002371 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2465.390869 B =11808.054423 C =13244.846428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.314 6.314 3 C 0.122 3.878 4 C -0.198 4.198 5 C -0.088 4.088 6 C -0.131 4.131 7 C -0.072 4.072 8 C 0.182 3.818 9 N -0.745 5.745 10 C 0.709 3.291 11 O -0.598 6.598 12 N -0.624 5.624 13 C 0.137 3.863 14 C 0.040 3.960 15 N -0.535 5.535 16 C 0.194 3.806 17 C -0.510 4.510 18 H 0.063 0.937 19 C 0.056 3.944 20 N -0.898 5.898 21 Si 0.898 3.102 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.276 1.276 25 C 0.051 3.949 26 C 0.115 3.885 27 C -0.095 4.095 28 C -0.112 4.112 29 H 0.100 0.900 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.128 0.872 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.398 0.602 38 H 0.070 0.930 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.026 0.974 42 H 0.032 0.968 43 H -0.009 1.009 44 H 0.262 0.738 45 H 0.024 0.976 46 H 0.096 0.904 47 H 0.076 0.924 48 H 0.069 0.931 49 H 0.070 0.930 50 H 0.071 0.929 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.479 -7.393 20.233 27.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.227 6.227 3 C 0.077 3.923 4 C -0.217 4.217 5 C -0.106 4.106 6 C -0.150 4.150 7 C -0.073 4.073 8 C 0.058 3.942 9 N -0.404 5.404 10 C 0.410 3.590 11 O -0.477 6.477 12 N -0.361 5.361 13 C 0.014 3.986 14 C -0.089 4.089 15 N -0.260 5.260 16 C 0.069 3.931 17 C -0.548 4.548 18 H 0.081 0.919 19 C -0.146 4.146 20 N -0.537 5.537 21 Si 0.726 3.274 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.201 1.201 25 C -0.078 4.078 26 C -0.008 4.008 27 C -0.097 4.097 28 C -0.169 4.169 29 H 0.118 0.882 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.146 0.854 33 H 0.144 0.856 34 H 0.145 0.855 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.234 0.766 38 H 0.088 0.912 39 H 0.106 0.894 40 H 0.100 0.900 41 H 0.044 0.956 42 H 0.050 0.950 43 H 0.009 0.991 44 H 0.072 0.928 45 H 0.042 0.958 46 H 0.114 0.886 47 H 0.094 0.906 48 H 0.087 0.913 49 H 0.088 0.912 50 H 0.090 0.910 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.616 -7.826 20.641 27.040 hybrid contribution -1.427 0.790 -1.132 1.985 sum -17.043 -7.036 19.509 26.844 Atomic orbital electron populations 1.23064 0.78410 1.04005 1.01323 1.86073 1.21249 1.26693 1.88684 1.18793 0.91688 0.84306 0.97546 1.21266 1.00040 0.92390 1.08028 1.20918 0.94501 0.97079 0.98104 1.21037 0.93745 0.98036 1.02160 1.19612 0.95040 0.92110 1.00530 1.19944 0.87913 1.02553 0.83773 1.45287 1.05860 1.78781 1.10456 1.15793 0.82209 0.77808 0.83161 1.90883 1.55260 1.58656 1.42901 1.47379 1.08946 1.75188 1.04602 1.21618 0.79263 0.99693 0.98047 1.22440 0.99124 0.95716 0.91666 1.62065 1.03410 1.55232 1.05267 1.19722 0.97354 0.89644 0.86394 1.21096 1.31602 1.09185 0.92957 0.91875 1.24993 0.95614 0.94937 0.99033 1.69947 1.40780 1.17127 1.25840 0.86557 0.79866 0.78915 0.82034 1.20287 1.21375 1.20129 1.22312 0.92051 0.95905 0.97552 1.21863 0.91573 1.00517 0.86859 1.19151 0.90559 0.95777 1.04173 1.20713 0.99342 0.94226 1.02597 0.88196 0.92709 0.92601 0.85438 0.85559 0.85462 0.90431 0.90767 0.76565 0.91191 0.89376 0.90027 0.95585 0.94987 0.99148 0.92814 0.95762 0.88587 0.90602 0.91306 0.91175 0.91049 0.90901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.31 -2.82 9.54 -19.41 -0.19 -3.01 16 3 C 0.12 1.16 6.66 -39.22 -0.26 0.90 16 4 C -0.20 -1.62 9.04 -39.44 -0.36 -1.98 16 5 C -0.09 -0.71 10.04 -39.61 -0.40 -1.11 16 6 C -0.13 -1.17 9.67 -39.56 -0.38 -1.55 16 7 C -0.07 -0.70 5.25 -104.64 -0.55 -1.25 16 8 C 0.18 1.97 4.93 -5.19 -0.03 1.95 16 9 N -0.75 -9.09 4.80 -66.41 -0.32 -9.40 16 10 C 0.71 11.06 8.31 -86.92 -0.72 10.34 16 11 O -0.60 -11.16 15.83 5.29 0.08 -11.08 16 12 N -0.62 -9.66 3.01 -178.19 -0.54 -10.20 16 13 C 0.14 2.18 6.58 -3.60 -0.02 2.16 16 14 C 0.04 0.72 5.62 -3.70 -0.02 0.70 16 15 N -0.53 -11.09 4.62 -235.77 -1.09 -12.18 16 16 C 0.19 4.92 4.72 -4.98 -0.02 4.89 16 17 C -0.51 -13.84 8.41 -34.44 -0.29 -14.13 16 18 H 0.06 1.67 7.13 -52.48 -0.37 1.30 16 19 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 20 N -0.90 -26.27 13.29 55.43 0.74 -25.53 16 21 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 C 0.05 0.93 5.46 -3.70 -0.02 0.91 16 26 C 0.12 1.66 6.60 -3.60 -0.02 1.64 16 27 C -0.10 -0.95 5.89 -104.47 -0.62 -1.56 16 28 C -0.11 -1.05 9.04 36.00 0.33 -0.72 16 29 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.23 7.66 -51.93 -0.40 -0.17 16 31 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 32 H 0.13 0.77 6.30 -52.49 -0.33 0.44 16 33 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 34 H 0.13 1.00 8.03 -52.49 -0.42 0.58 16 35 H 0.08 0.87 7.28 -51.93 -0.38 0.49 16 36 H 0.07 0.82 8.00 -51.93 -0.42 0.41 16 37 H 0.40 4.36 5.96 -40.82 -0.24 4.12 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.09 1.40 7.11 -51.93 -0.37 1.03 16 40 H 0.08 1.42 7.99 -51.93 -0.41 1.01 16 41 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.03 0.87 7.97 -51.93 -0.41 0.46 16 43 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 44 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.10 1.85 6.67 -51.93 -0.35 1.50 16 47 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 48 H 0.07 0.80 5.63 -51.93 -0.29 0.51 16 49 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.07 0.66 7.53 -51.93 -0.39 0.27 16 51 H 0.07 0.72 6.34 -51.93 -0.33 0.39 16 LS Contribution 404.02 15.07 6.09 6.09 Total: -1.00 -32.69 404.02 -10.77 -43.45 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -8.03 Total: 1.98 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: -2.49 Total: 3.77 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: -1.21 Total: -57.31 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.10 Total: -14.08 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.69 -10.77 -43.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601623166.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.361 kcal (2) G-P(sol) polarization free energy of solvation -32.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds