Wall clock time and date at job start Wed Apr 1 2020 05:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35896 * 116.99997 * 2 1 4 4 C 1.38750 * 120.05766 * 359.97438 * 3 2 1 5 5 C 1.38116 * 119.94452 * 180.02562 * 4 3 2 6 6 C 1.38287 * 120.06092 * 359.72353 * 5 4 3 7 7 C 1.38244 * 120.10592 * 0.55028 * 6 5 4 8 8 C 1.50704 * 119.97377 * 179.72348 * 7 6 5 9 9 N 1.46500 * 109.47102 * 259.72656 * 8 7 6 10 10 C 1.34777 * 119.99655 * 179.97438 * 9 8 7 11 11 O 1.21585 * 120.00078 * 5.08351 * 10 9 8 12 12 N 1.34777 * 119.99639 * 185.08598 * 10 9 8 13 13 C 1.47081 * 120.87929 * 175.00697 * 12 10 9 14 14 C 1.53239 * 108.51873 * 231.20054 * 13 12 10 15 15 N 1.46895 * 109.34248 * 306.17089 * 14 13 12 16 16 C 1.46898 * 111.00143 * 187.25467 * 15 14 13 17 17 C 1.50699 * 109.47455 * 169.99984 * 16 15 14 18 18 H 1.08003 * 119.99363 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00158 * 179.72133 * 17 16 15 20 20 N 1.31516 * 120.00253 * 0.27907 * 19 17 16 21 21 Si 1.86798 * 120.00168 * 180.27249 * 19 17 16 22 22 H 1.48507 * 109.46708 * 60.00286 * 21 19 17 23 23 H 1.48501 * 109.47519 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47121 * 300.00523 * 21 19 17 25 25 C 1.46897 * 111.26921 * 63.10247 * 15 14 13 26 26 C 1.47078 * 120.88358 * 355.02107 * 12 10 9 27 27 C 1.38171 * 120.05833 * 359.45282 * 7 6 5 28 28 C 1.50694 * 120.02961 * 180.25429 * 27 7 6 29 29 H 1.09001 * 109.47046 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47015 * 299.99177 * 1 2 3 31 31 H 1.08999 * 109.47167 * 59.99875 * 1 2 3 32 32 H 1.08001 * 120.02700 * 0.03848 * 4 3 2 33 33 H 1.08002 * 119.97417 * 180.02562 * 5 4 3 34 34 H 1.07998 * 119.95260 * 180.29940 * 6 5 4 35 35 H 1.09006 * 109.47081 * 139.72495 * 8 7 6 36 36 H 1.09003 * 109.47009 * 19.72846 * 8 7 6 37 37 H 0.96995 * 119.99868 * 0.02562 * 9 8 7 38 38 H 1.08999 * 109.62946 * 111.49200 * 13 12 10 39 39 H 1.09000 * 109.78911 * 351.00348 * 13 12 10 40 40 H 1.08999 * 109.49149 * 186.20701 * 14 13 12 41 41 H 1.09002 * 109.48916 * 66.13276 * 14 13 12 42 42 H 1.08999 * 109.47130 * 49.99604 * 16 15 14 43 43 H 1.09004 * 109.46764 * 290.00180 * 16 15 14 44 44 H 0.96996 * 120.00268 * 180.02562 * 20 19 17 45 45 H 1.09004 * 109.49209 * 56.85405 * 25 15 14 46 46 H 1.09001 * 109.49155 * 176.93324 * 25 15 14 47 47 H 1.08992 * 109.62939 * 248.50761 * 26 12 10 48 48 H 1.09005 * 109.62604 * 9.09078 * 26 12 10 49 49 H 1.09004 * 109.47670 * 90.00074 * 28 27 7 50 50 H 1.09005 * 109.46855 * 209.99808 * 28 27 7 51 51 H 1.08999 * 109.47110 * 329.99292 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9209 3.6046 -0.0011 6 6 3.3019 3.6758 0.0047 7 6 4.0560 2.5171 -0.0005 8 6 5.5609 2.5981 -0.0004 9 7 6.0614 2.3843 -1.3606 10 6 7.3869 2.4132 -1.6031 11 8 8.1714 2.5243 -0.6808 12 7 7.8427 2.3190 -2.8679 13 6 9.2763 2.4576 -3.1660 14 6 9.4434 3.4945 -4.2818 15 7 8.6046 3.1166 -5.4269 16 6 8.8651 3.9878 -6.5807 17 6 8.1787 3.4265 -7.7992 18 1 7.6058 2.5140 -7.7239 19 6 8.2769 4.0811 -9.0086 20 7 8.9741 5.1925 -9.1001 21 14 7.4197 3.3894 -10.5173 22 1 5.9578 3.3169 -10.2663 23 1 7.6791 4.2727 -11.6826 24 1 7.9412 2.0285 -10.8025 25 6 7.1796 3.1274 -5.0702 26 6 6.9197 2.0753 -3.9868 27 6 3.4312 1.2847 0.0000 28 6 4.2538 0.0221 0.0002 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5138 -0.8900 32 1 0.2128 2.3203 -0.0003 33 1 1.3341 4.5113 -0.0011 34 1 3.7923 4.6380 0.0092 35 1 5.9660 1.8318 0.6605 36 1 5.8717 3.5821 0.3506 37 1 5.4389 2.2226 -2.0866 38 1 9.6763 1.4984 -3.4947 39 1 9.8081 2.7900 -2.2745 40 1 10.4878 3.5300 -4.5919 41 1 9.1388 4.4750 -3.9156 42 1 9.9388 4.0409 -6.7606 43 1 8.4812 4.9871 -6.3753 44 1 9.0428 5.6532 -9.9509 45 1 6.9065 4.1130 -4.6931 46 1 6.5822 2.8966 -5.9522 47 1 7.0932 1.0795 -4.3944 48 1 5.8905 2.1567 -3.6369 49 1 4.4524 -0.2821 1.0279 50 1 3.7062 -0.7683 -0.5133 51 1 5.1976 0.2033 -0.5140 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601623166.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:47:59 Heat of formation + Delta-G solvation = -44.957962 kcal Electronic energy + Delta-G solvation = -30611.147511 eV Core-core repulsion = 26510.351207 eV Total energy + Delta-G solvation = -4100.796304 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.65622 -41.12646 -39.27017 -38.61729 -35.96508 -35.93336 -34.40427 -33.68007 -32.26527 -31.48241 -29.94655 -28.48179 -28.09463 -27.29363 -26.26282 -24.67901 -23.81181 -22.77402 -22.27109 -21.80417 -20.57179 -19.34567 -18.48999 -18.41462 -17.58783 -17.40245 -16.76683 -16.67819 -16.66935 -16.47809 -15.99259 -15.89060 -15.40170 -15.38247 -15.25237 -15.00056 -14.58503 -14.46504 -14.33377 -14.06250 -13.89584 -13.58226 -13.43083 -13.21717 -13.02100 -12.99207 -12.80304 -12.77436 -12.56232 -12.40664 -12.30937 -12.25433 -12.14236 -11.98004 -11.77016 -11.70080 -11.29189 -11.24952 -10.59782 -10.28304 -9.77596 -9.59805 -9.10002 -9.03627 -8.18845 -6.29275 0.15706 0.44096 1.44001 1.47108 1.54713 1.64774 2.09109 2.36315 2.41995 2.64949 2.99693 3.13644 3.23689 3.61114 3.80866 3.95497 4.03129 4.05827 4.12482 4.17889 4.19669 4.25120 4.34171 4.41214 4.44179 4.48037 4.51641 4.62976 4.72535 4.74946 4.76695 4.77226 4.78280 4.85664 4.88467 4.94649 5.02657 5.18539 5.24083 5.28105 5.35886 5.40288 5.43236 5.46941 5.58718 5.64604 5.77837 5.90898 6.04193 6.28426 6.44384 6.56935 6.86136 6.89483 7.40655 7.48694 8.92255 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011354 B = 0.002371 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2465.390869 B =11808.054423 C =13244.846428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.331 6.331 3 C 0.111 3.889 4 C -0.198 4.198 5 C -0.089 4.089 6 C -0.139 4.139 7 C -0.078 4.078 8 C 0.186 3.814 9 N -0.731 5.731 10 C 0.708 3.292 11 O -0.629 6.629 12 N -0.628 5.628 13 C 0.146 3.854 14 C 0.043 3.957 15 N -0.537 5.537 16 C 0.208 3.792 17 C -0.521 4.521 18 H 0.070 0.930 19 C 0.000 4.000 20 N -0.936 5.936 21 Si 0.970 3.030 22 H -0.264 1.264 23 H -0.287 1.287 24 H -0.268 1.268 25 C 0.052 3.948 26 C 0.127 3.873 27 C -0.110 4.110 28 C -0.106 4.106 29 H 0.115 0.885 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.150 0.850 33 H 0.149 0.851 34 H 0.135 0.865 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.405 0.595 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.014 0.986 42 H 0.005 0.995 43 H -0.041 1.041 44 H 0.264 0.736 45 H 0.013 0.987 46 H 0.086 0.914 47 H 0.086 0.914 48 H 0.101 0.899 49 H 0.072 0.928 50 H 0.069 0.931 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.007 -8.612 20.478 29.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.245 6.245 3 C 0.065 3.935 4 C -0.217 4.217 5 C -0.107 4.107 6 C -0.158 4.158 7 C -0.078 4.078 8 C 0.062 3.938 9 N -0.389 5.389 10 C 0.410 3.590 11 O -0.511 6.511 12 N -0.364 5.364 13 C 0.023 3.977 14 C -0.086 4.086 15 N -0.262 5.262 16 C 0.082 3.918 17 C -0.559 4.559 18 H 0.088 0.912 19 C -0.198 4.198 20 N -0.577 5.577 21 Si 0.795 3.205 22 H -0.189 1.189 23 H -0.213 1.213 24 H -0.193 1.193 25 C -0.077 4.077 26 C 0.004 3.996 27 C -0.112 4.112 28 C -0.163 4.163 29 H 0.134 0.866 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.168 0.832 33 H 0.167 0.833 34 H 0.153 0.847 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.243 0.757 38 H 0.099 0.901 39 H 0.108 0.892 40 H 0.101 0.899 41 H 0.033 0.967 42 H 0.024 0.976 43 H -0.024 1.024 44 H 0.072 0.928 45 H 0.032 0.968 46 H 0.104 0.896 47 H 0.104 0.896 48 H 0.119 0.881 49 H 0.090 0.910 50 H 0.088 0.912 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -18.189 -9.066 20.906 29.157 hybrid contribution -0.698 1.189 -1.133 1.784 sum -18.887 -7.878 19.774 28.457 Atomic orbital electron populations 1.23327 0.76596 1.05448 1.02210 1.86048 1.23203 1.26637 1.88645 1.18954 0.91750 0.85056 0.97705 1.21561 1.01224 0.91931 1.06942 1.21220 0.94299 0.98026 0.97117 1.21218 0.94387 0.98056 1.02111 1.19474 0.94110 0.92560 1.01677 1.19947 0.88884 1.02171 0.82771 1.45208 1.04702 1.77566 1.11381 1.15892 0.82939 0.77565 0.82650 1.90862 1.56356 1.60114 1.43780 1.47396 1.08857 1.75221 1.04949 1.21477 0.79978 0.99252 0.96994 1.22468 0.98749 0.96002 0.91390 1.61999 1.05407 1.53676 1.05125 1.19376 0.95299 0.88859 0.88256 1.21423 1.31539 1.09333 0.93647 0.91225 1.25936 0.96248 0.95142 1.02436 1.70090 1.42286 1.18606 1.26702 0.85423 0.79179 0.78227 0.77712 1.18899 1.21305 1.19275 1.22339 0.90145 0.96765 0.98453 1.21826 0.93034 0.99361 0.85356 1.19257 0.91176 0.95822 1.04914 1.20639 0.98836 0.94212 1.02601 0.86644 0.91611 0.91824 0.83250 0.83288 0.84715 0.90912 0.91040 0.75677 0.90146 0.89173 0.89874 0.96745 0.97642 1.02377 0.92760 0.96828 0.89559 0.89582 0.88131 0.90975 0.91198 0.91668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.26 16 2 O -0.33 -5.44 9.54 -92.39 -0.88 -6.32 16 3 C 0.11 1.94 6.66 22.51 0.15 2.09 16 4 C -0.20 -2.76 9.04 22.36 0.20 -2.56 16 5 C -0.09 -1.21 10.04 22.25 0.22 -0.99 16 6 C -0.14 -2.24 9.67 22.28 0.22 -2.03 16 7 C -0.08 -1.42 5.25 -19.88 -0.10 -1.52 16 8 C 0.19 3.88 4.93 85.63 0.42 4.30 16 9 N -0.73 -16.87 4.80 -482.28 -2.31 -19.18 16 10 C 0.71 21.34 8.31 179.05 1.49 22.83 16 11 O -0.63 -23.17 15.83 -3.98 -0.06 -23.23 16 12 N -0.63 -18.65 3.01 -835.94 -2.52 -21.17 16 13 C 0.15 4.56 6.58 86.35 0.57 5.13 16 14 C 0.04 1.57 5.62 86.38 0.49 2.06 16 15 N -0.54 -22.50 4.62 -899.84 -4.16 -26.66 16 16 C 0.21 10.93 4.72 85.56 0.40 11.34 16 17 C -0.52 -28.54 8.41 25.60 0.22 -28.33 16 18 H 0.07 3.65 7.13 -2.91 -0.02 3.63 16 19 C 0.00 0.02 5.46 84.65 0.46 0.48 16 20 N -0.94 -55.86 13.29 21.45 0.28 -55.58 16 21 Si 0.97 43.06 29.54 68.60 2.03 45.09 16 22 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 23 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 24 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 25 C 0.05 1.87 5.46 86.38 0.47 2.34 16 26 C 0.13 3.43 6.60 86.35 0.57 4.00 16 27 C -0.11 -2.07 5.89 -19.77 -0.12 -2.19 16 28 C -0.11 -1.91 9.04 71.23 0.64 -1.26 16 29 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.07 0.39 7.66 -2.39 -0.02 0.37 16 31 H 0.06 0.42 7.66 -2.39 -0.02 0.40 16 32 H 0.15 1.33 6.30 -2.91 -0.02 1.31 16 33 H 0.15 1.30 8.06 -2.91 -0.02 1.28 16 34 H 0.13 1.90 8.03 -2.91 -0.02 1.88 16 35 H 0.07 1.60 7.28 -2.38 -0.02 1.58 16 36 H 0.07 1.54 8.00 -2.39 -0.02 1.52 16 37 H 0.41 8.09 5.96 -92.71 -0.55 7.54 16 38 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.09 2.82 7.11 -2.39 -0.02 2.80 16 40 H 0.08 2.97 7.99 -2.39 -0.02 2.95 16 41 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.01 0.31 7.97 -2.39 -0.02 0.29 16 43 H -0.04 -2.40 8.12 -2.38 -0.02 -2.42 16 44 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 45 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 46 H 0.09 3.27 6.67 -2.39 -0.02 3.26 16 47 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 48 H 0.10 2.08 5.63 -2.38 -0.01 2.07 16 49 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 50 H 0.07 1.25 7.53 -2.38 -0.02 1.23 16 51 H 0.06 1.24 6.34 -2.39 -0.02 1.22 16 Total: -1.00 -71.08 404.02 0.18 -70.90 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: 0.39 Total: 19.21 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: 7.41 Total: 16.95 kcal Atomic # 7 Polarization: -113.89 SS G_CDS: -8.70 Total: -122.59 kcal Atomic # 8 Polarization: -28.61 SS G_CDS: -0.94 Total: -29.55 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -71.08 0.18 -70.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601623166.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.942 kcal (2) G-P(sol) polarization free energy of solvation -71.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds