Wall clock time and date at job start Wed Apr 1 2020 05:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38116 * 120.03767 * 2 1 4 4 C 1.38275 * 120.07311 * 179.72577 * 3 2 1 5 5 C 1.38281 * 120.14125 * 0.27246 * 4 3 2 6 6 C 1.38111 * 120.07227 * 359.96075 * 5 4 3 7 7 C 1.50693 * 120.03895 * 180.02562 * 6 5 4 8 8 C 1.38874 * 119.92795 * 0.02562 * 6 5 4 9 9 N 1.39924 * 120.07372 * 180.02562 * 8 6 5 10 10 C 1.34780 * 119.99801 * 244.28489 * 9 8 6 11 11 O 1.21288 * 120.00239 * 4.82787 * 10 9 8 12 12 C 1.50696 * 119.99632 * 184.82868 * 10 9 8 13 13 N 1.46508 * 109.47015 * 179.97438 * 12 10 9 14 14 C 1.34771 * 119.99791 * 179.97438 * 13 12 10 15 15 O 1.21277 * 120.00799 * 0.02562 * 14 13 12 16 16 C 1.50708 * 119.99756 * 180.02562 * 14 13 12 17 17 H 1.08999 * 109.46995 * 59.99954 * 16 14 13 18 18 C 1.53000 * 109.46952 * 300.00196 * 16 14 13 19 19 N 1.46892 * 109.46985 * 180.02562 * 16 14 13 20 20 C 1.46909 * 110.99851 * 204.99988 * 19 16 14 21 21 H 1.08998 * 109.46831 * 325.00142 * 20 19 16 22 22 C 1.52995 * 109.47233 * 85.00205 * 20 19 16 23 23 C 1.50702 * 109.47072 * 204.99985 * 20 19 16 24 24 H 1.08003 * 120.00094 * 0.02562 * 23 20 19 25 25 C 1.37877 * 120.00011 * 179.97438 * 23 20 19 26 26 N 1.31514 * 119.99606 * 359.97438 * 25 23 20 27 27 Si 1.86796 * 120.00025 * 180.02562 * 25 23 20 28 28 H 1.48496 * 109.47413 * 89.99877 * 27 25 23 29 29 H 1.48501 * 109.47127 * 209.99692 * 27 25 23 30 30 H 1.48504 * 109.46987 * 329.99888 * 27 25 23 31 31 H 1.09002 * 109.47202 * 96.71569 * 1 2 3 32 32 H 1.08992 * 109.47033 * 216.71144 * 1 2 3 33 33 H 1.09003 * 109.47059 * 336.71916 * 1 2 3 34 34 H 1.08007 * 119.96316 * 0.02562 * 3 2 1 35 35 H 1.08002 * 119.93262 * 180.25484 * 4 3 2 36 36 H 1.08002 * 119.96492 * 179.97438 * 5 4 3 37 37 H 1.09006 * 109.46992 * 89.99839 * 7 6 5 38 38 H 1.08998 * 109.47456 * 209.99902 * 7 6 5 39 39 H 1.09003 * 109.47096 * 330.00368 * 7 6 5 40 40 H 0.97002 * 120.00257 * 64.27574 * 9 8 6 41 41 H 1.09000 * 109.47410 * 299.99530 * 12 10 9 42 42 H 1.08999 * 109.47390 * 59.99914 * 12 10 9 43 43 H 0.97000 * 119.99289 * 0.02562 * 13 12 10 44 44 H 1.09001 * 109.47428 * 60.00141 * 18 16 14 45 45 H 1.09001 * 109.46843 * 179.97438 * 18 16 14 46 46 H 1.08999 * 109.47072 * 299.99710 * 18 16 14 47 47 H 1.00907 * 111.00180 * 81.04701 * 19 16 14 48 48 H 1.08994 * 109.47205 * 180.02562 * 22 20 19 49 49 H 1.09011 * 109.47004 * 300.00189 * 22 20 19 50 50 H 1.08996 * 109.47142 * 59.99674 * 22 20 19 51 51 H 0.97002 * 119.99513 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1957 0.0000 4 6 3.5811 1.1965 0.0057 5 6 4.2762 0.0011 0.0058 6 6 3.5909 -1.1979 0.0009 7 6 4.3491 -2.5002 0.0016 8 6 2.2022 -1.2022 -0.0045 9 7 1.5048 -2.4153 -0.0089 10 6 0.7340 -2.7456 -1.0641 11 8 0.7131 -2.0343 -2.0462 12 6 -0.1020 -3.9988 -1.0234 13 7 -0.8432 -4.1324 -2.2801 14 6 -1.6616 -5.1859 -2.4710 15 8 -1.7851 -6.0233 -1.6024 16 6 -2.4236 -5.3236 -3.7639 17 1 -1.7210 -5.3820 -4.5952 18 6 -3.3349 -4.1089 -3.9507 19 7 -3.2385 -6.5451 -3.7243 20 6 -3.5133 -7.0390 -5.0803 21 1 -3.6317 -6.1934 -5.7578 22 6 -2.3476 -7.9107 -5.5516 23 6 -4.7795 -7.8560 -5.0704 24 1 -5.3258 -7.9943 -4.1491 25 6 -5.2412 -8.4262 -6.2378 26 7 -4.5767 -8.2565 -7.3600 27 14 -6.8111 -9.4383 -6.2257 28 1 -7.9732 -8.5527 -6.4910 29 1 -6.7346 -10.4831 -7.2782 30 1 -6.9736 -10.0839 -4.8982 31 1 -0.3634 -0.1202 -1.0206 32 1 -0.3633 -0.8238 0.6143 33 1 -0.3633 0.9440 0.4062 34 1 1.6584 2.1310 0.0004 35 1 4.1194 2.1328 0.0099 36 1 5.3562 0.0051 0.0098 37 1 4.5279 -2.8160 1.0295 38 1 3.7649 -3.2611 -0.5159 39 1 5.3031 -2.3654 -0.5082 40 1 1.5761 -3.0185 0.7473 41 1 0.5470 -4.8643 -0.8902 42 1 -0.8046 -3.9401 -0.1921 43 1 -0.7441 -3.4629 -2.9750 44 1 -2.7305 -3.2023 -3.9799 45 1 -3.8857 -4.2083 -4.8860 46 1 -4.0375 -4.0506 -3.1193 47 1 -4.0959 -6.3915 -3.2148 48 1 -2.5512 -8.2767 -6.5578 49 1 -1.4316 -7.3197 -5.5587 50 1 -2.2291 -8.7562 -4.8740 51 1 -4.9014 -8.6580 -8.1812 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602864337.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:13 Heat of formation + Delta-G solvation = -71.036817 kcal Electronic energy + Delta-G solvation = -30091.809883 eV Core-core repulsion = 25989.882715 eV Total energy + Delta-G solvation = -4101.927168 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.86872 -40.81479 -39.63283 -37.77609 -35.96121 -35.44523 -34.90751 -34.51248 -32.33902 -31.80973 -29.52085 -28.55801 -27.61117 -27.55473 -27.27517 -24.93666 -23.13848 -21.96590 -21.83965 -21.42310 -21.09740 -19.37276 -18.64726 -18.11276 -17.43112 -17.18322 -17.10888 -16.76096 -16.42206 -16.15174 -15.84895 -15.48433 -15.22019 -14.99429 -14.83641 -14.73653 -14.39006 -14.24104 -14.12924 -13.90169 -13.88566 -13.63309 -13.52900 -13.38375 -13.26631 -12.85706 -12.83256 -12.59855 -12.52837 -12.45896 -12.28375 -12.21733 -12.18450 -12.17050 -11.93189 -11.28216 -10.94391 -10.79269 -10.72955 -10.54201 -10.18613 -9.51345 -9.41335 -9.00768 -8.12246 -6.25010 0.26453 0.40437 1.36942 1.42671 1.44420 1.54951 1.67952 1.68332 2.34344 2.44697 2.75348 3.16640 3.48969 3.65304 3.81570 3.86173 3.89043 4.08074 4.13603 4.20691 4.29491 4.34648 4.38096 4.43202 4.52488 4.58719 4.69696 4.71697 4.77680 4.79925 4.83379 4.83558 4.91427 5.06454 5.11931 5.19599 5.21336 5.27679 5.29936 5.39172 5.47300 5.48692 5.59344 5.60825 5.68020 5.85274 6.07037 6.22228 6.26794 6.41525 6.50254 6.77282 6.98481 7.01754 7.27439 7.44666 8.93491 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.027080 B = 0.001772 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.706599 B =15798.692043 C =16085.711404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.088 4.088 3 C -0.130 4.130 4 C -0.115 4.115 5 C -0.126 4.126 6 C -0.095 4.095 7 C -0.113 4.113 8 C 0.113 3.887 9 N -0.661 5.661 10 C 0.520 3.480 11 O -0.550 6.550 12 C 0.103 3.897 13 N -0.716 5.716 14 C 0.530 3.470 15 O -0.555 6.555 16 C 0.067 3.933 17 H 0.095 0.905 18 C -0.164 4.164 19 N -0.672 5.672 20 C 0.220 3.780 21 H -0.014 1.014 22 C -0.115 4.115 23 C -0.536 4.536 24 H 0.056 0.944 25 C 0.015 3.985 26 N -0.915 5.915 27 Si 0.961 3.039 28 H -0.274 1.274 29 H -0.283 1.283 30 H -0.272 1.272 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.139 0.861 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.089 0.911 38 H 0.058 0.942 39 H 0.076 0.924 40 H 0.425 0.575 41 H 0.110 0.890 42 H 0.114 0.886 43 H 0.414 0.586 44 H 0.084 0.916 45 H 0.056 0.944 46 H 0.062 0.938 47 H 0.336 0.664 48 H 0.061 0.939 49 H 0.021 0.979 50 H 0.022 0.978 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.186 20.460 18.243 32.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.090 4.090 3 C -0.148 4.148 4 C -0.133 4.133 5 C -0.145 4.145 6 C -0.096 4.096 7 C -0.170 4.170 8 C 0.021 3.979 9 N -0.311 5.311 10 C 0.308 3.692 11 O -0.427 6.427 12 C -0.024 4.024 13 N -0.373 5.373 14 C 0.316 3.684 15 O -0.432 6.432 16 C -0.047 4.047 17 H 0.113 0.887 18 C -0.223 4.223 19 N -0.303 5.303 20 C 0.112 3.888 21 H 0.003 0.997 22 C -0.174 4.174 23 C -0.574 4.574 24 H 0.074 0.926 25 C -0.185 4.185 26 N -0.554 5.554 27 Si 0.787 3.213 28 H -0.200 1.200 29 H -0.209 1.209 30 H -0.197 1.197 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.157 0.843 35 H 0.165 0.835 36 H 0.163 0.837 37 H 0.107 0.893 38 H 0.077 0.923 39 H 0.095 0.905 40 H 0.265 0.735 41 H 0.128 0.872 42 H 0.132 0.868 43 H 0.252 0.748 44 H 0.103 0.897 45 H 0.075 0.925 46 H 0.081 0.919 47 H 0.155 0.845 48 H 0.079 0.921 49 H 0.040 0.960 50 H 0.041 0.959 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 18.583 19.849 18.081 32.653 hybrid contribution -1.362 0.001 -0.665 1.515 sum 17.221 19.849 17.416 31.526 Atomic orbital electron populations 1.20768 0.90827 1.03333 1.01992 1.20194 0.96718 0.92791 0.99288 1.21209 0.94921 0.97402 1.01269 1.21491 0.94085 0.99170 0.98513 1.21232 1.00990 0.91276 1.00954 1.20271 0.92158 0.97351 0.99846 1.20782 0.99845 0.92952 1.03421 1.17367 0.90326 0.85137 1.05046 1.43054 1.46839 1.20039 1.21139 1.20708 0.79433 0.86677 0.82369 1.90726 1.65479 1.53483 1.33009 1.21105 0.96190 0.95896 0.89167 1.45668 1.45721 1.26774 1.19176 1.20743 0.78717 0.80026 0.88866 1.90650 1.65106 1.41980 1.45426 1.21469 0.96895 0.91580 0.94768 0.88674 1.22329 1.00076 0.97409 1.02533 1.60293 1.23129 1.28782 1.18086 1.18927 0.93354 0.92647 0.83878 0.99688 1.21591 0.95975 0.98655 1.01162 1.21536 1.08323 1.32866 0.94712 0.92584 1.25682 1.00324 0.97346 0.95109 1.70009 1.40185 1.45625 0.99611 0.85506 0.79638 0.78429 0.77724 1.19958 1.20853 1.19653 0.92165 0.91627 0.90151 0.84349 0.83526 0.83676 0.89293 0.92250 0.90482 0.73526 0.87248 0.86839 0.74817 0.89668 0.92479 0.91859 0.84549 0.92073 0.96016 0.95925 0.92814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.84 8.59 71.24 0.61 -1.23 16 2 C -0.09 -1.54 5.60 -19.74 -0.11 -1.65 16 3 C -0.13 -1.90 9.67 22.25 0.22 -1.69 16 4 C -0.11 -1.42 10.04 22.29 0.22 -1.19 16 5 C -0.13 -1.60 9.70 22.25 0.22 -1.38 16 6 C -0.09 -1.39 5.90 -19.74 -0.12 -1.50 16 7 C -0.11 -1.19 9.77 71.23 0.70 -0.50 16 8 C 0.11 1.90 5.53 38.15 0.21 2.12 16 9 N -0.66 -9.15 3.63 -303.50 -1.10 -10.25 16 10 C 0.52 9.74 6.74 87.66 0.59 10.33 16 11 O -0.55 -14.23 14.09 -3.05 -0.04 -14.27 16 12 C 0.10 1.93 6.16 85.63 0.53 2.46 16 13 N -0.72 -17.70 5.42 -466.78 -2.53 -20.23 16 14 C 0.53 17.44 7.22 87.66 0.63 18.07 16 15 O -0.56 -22.11 16.43 -3.02 -0.05 -22.16 16 16 C 0.07 2.38 2.81 44.17 0.12 2.50 16 17 H 0.10 3.43 7.11 -2.39 -0.02 3.41 16 18 C -0.16 -4.89 9.04 71.98 0.65 -4.24 16 19 N -0.67 -29.87 5.54 -477.15 -2.64 -32.51 16 20 C 0.22 11.28 2.41 44.17 0.11 11.39 16 21 H -0.01 -0.78 7.11 -2.39 -0.02 -0.80 16 22 C -0.12 -5.91 9.17 71.98 0.66 -5.25 16 23 C -0.54 -29.85 8.59 25.60 0.22 -29.63 16 24 H 0.06 3.10 7.62 -2.91 -0.02 3.08 16 25 C 0.01 0.82 5.30 84.65 0.45 1.27 16 26 N -0.92 -52.56 11.32 21.45 0.24 -52.32 16 27 Si 0.96 43.98 29.54 68.60 2.03 46.00 16 28 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 29 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 30 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 31 H 0.06 1.24 7.17 -2.39 -0.02 1.22 16 32 H 0.06 1.00 7.55 -2.39 -0.02 0.98 16 33 H 0.08 1.03 8.04 -2.39 -0.02 1.01 16 34 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 35 H 0.15 1.05 8.06 -2.91 -0.02 1.03 16 36 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 37 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 38 H 0.06 0.72 7.46 -2.39 -0.02 0.70 16 39 H 0.08 0.70 8.09 -2.39 -0.02 0.68 16 40 H 0.43 3.25 8.83 -92.71 -0.82 2.43 16 41 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.41 9.75 6.86 -92.71 -0.64 9.11 16 44 H 0.08 2.01 7.57 -2.39 -0.02 1.99 16 45 H 0.06 1.90 7.43 -2.39 -0.02 1.88 16 46 H 0.06 1.82 8.13 -2.39 -0.02 1.80 16 47 H 0.34 14.96 7.96 -89.69 -0.71 14.24 16 48 H 0.06 3.38 6.07 -2.39 -0.01 3.37 16 49 H 0.02 0.98 7.43 -2.38 -0.02 0.96 16 50 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 51 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -72.76 415.00 0.61 -72.15 By element: Atomic # 1 Polarization: 34.92 SS G_CDS: -1.20 Total: 33.72 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: 5.91 Total: -0.13 kcal Atomic # 7 Polarization: -109.28 SS G_CDS: -6.03 Total: -115.31 kcal Atomic # 8 Polarization: -36.34 SS G_CDS: -0.09 Total: -36.43 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Total: -72.76 0.61 -72.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602864337.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.113 kcal (2) G-P(sol) polarization free energy of solvation -72.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds