Wall clock time and date at job start Wed Apr 1 2020 05:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38111 * 120.03308 * 2 1 4 4 C 1.38278 * 120.06725 * 179.72338 * 3 2 1 5 5 C 1.38281 * 120.14630 * 0.28307 * 4 3 2 6 6 C 1.38109 * 120.06699 * 359.95351 * 5 4 3 7 7 C 1.50704 * 120.03592 * 180.02562 * 6 5 4 8 8 C 1.38872 * 119.93222 * 0.02562 * 6 5 4 9 9 N 1.39923 * 120.07085 * 180.02562 * 8 6 5 10 10 C 1.34783 * 119.99762 * 233.47848 * 9 8 6 11 11 O 1.21287 * 119.99803 * 4.10059 * 10 9 8 12 12 C 1.50695 * 119.99844 * 184.10632 * 10 9 8 13 13 N 1.46495 * 109.47249 * 180.02562 * 12 10 9 14 14 C 1.34776 * 120.00356 * 180.02562 * 13 12 10 15 15 O 1.21287 * 119.99698 * 359.97438 * 14 13 12 16 16 C 1.50704 * 120.00246 * 180.02562 * 14 13 12 17 17 H 1.08998 * 109.47174 * 59.99850 * 16 14 13 18 18 C 1.52996 * 109.46922 * 299.99476 * 16 14 13 19 19 N 1.46900 * 109.47042 * 179.97438 * 16 14 13 20 20 C 1.46897 * 110.99685 * 200.92885 * 19 16 14 21 21 H 1.09000 * 109.47651 * 328.08887 * 20 19 16 22 22 C 1.53007 * 109.47171 * 208.09020 * 20 19 16 23 23 C 1.50700 * 109.47155 * 88.09357 * 20 19 16 24 24 H 1.08002 * 120.00120 * 359.97438 * 23 20 19 25 25 C 1.37883 * 120.00278 * 180.02562 * 23 20 19 26 26 N 1.31519 * 119.99608 * 359.97438 * 25 23 20 27 27 Si 1.86798 * 120.00151 * 179.97438 * 25 23 20 28 28 H 1.48496 * 109.47358 * 0.02562 * 27 25 23 29 29 H 1.48505 * 109.47087 * 119.99728 * 27 25 23 30 30 H 1.48495 * 109.47205 * 239.99636 * 27 25 23 31 31 H 1.09001 * 109.47758 * 83.13712 * 1 2 3 32 32 H 1.09006 * 109.47010 * 203.13604 * 1 2 3 33 33 H 1.09003 * 109.47388 * 323.12564 * 1 2 3 34 34 H 1.08004 * 119.96630 * 0.02562 * 3 2 1 35 35 H 1.08006 * 119.93153 * 180.25961 * 4 3 2 36 36 H 1.08001 * 119.96852 * 179.97438 * 5 4 3 37 37 H 1.08994 * 109.47481 * 89.99783 * 7 6 5 38 38 H 1.09003 * 109.47327 * 210.00374 * 7 6 5 39 39 H 1.09008 * 109.46884 * 329.99603 * 7 6 5 40 40 H 0.96996 * 120.00091 * 53.48491 * 9 8 6 41 41 H 1.09004 * 109.46951 * 300.00078 * 12 10 9 42 42 H 1.09002 * 109.47431 * 59.99686 * 12 10 9 43 43 H 0.97003 * 120.00019 * 359.97438 * 13 12 10 44 44 H 1.09000 * 109.47452 * 176.28571 * 18 16 14 45 45 H 1.09001 * 109.47418 * 296.29140 * 18 16 14 46 46 H 1.09008 * 109.47287 * 56.28511 * 18 16 14 47 47 H 1.00907 * 110.99811 * 324.88093 * 19 16 14 48 48 H 1.09000 * 109.46827 * 54.66013 * 22 20 19 49 49 H 1.08996 * 109.46683 * 174.66487 * 22 20 19 50 50 H 1.09004 * 109.46810 * 294.66531 * 22 20 19 51 51 H 0.96997 * 119.99402 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1957 0.0000 4 6 3.5810 1.1965 0.0058 5 6 4.2761 0.0012 0.0057 6 6 3.5908 -1.1979 0.0007 7 6 4.3491 -2.5002 0.0012 8 6 2.2021 -1.2022 -0.0046 9 7 1.5048 -2.4153 -0.0091 10 6 0.5703 -2.6520 -0.9511 11 8 0.3860 -1.8459 -1.8384 12 6 -0.2454 -3.9181 -0.9018 13 7 -1.1834 -3.9388 -2.0269 14 6 -2.0211 -4.9824 -2.1868 15 8 -1.9981 -5.9047 -1.3994 16 6 -2.9857 -5.0039 -3.3446 17 1 -2.4297 -4.9667 -4.2814 18 6 -3.9166 -3.7931 -3.2553 19 7 -3.7809 -6.2381 -3.2965 20 6 -4.3546 -6.5463 -4.6132 21 1 -4.5637 -5.6180 -5.1448 22 6 -5.6539 -7.3337 -4.4318 23 6 -3.3746 -7.3705 -5.4077 24 1 -2.4207 -7.6382 -4.9777 25 6 -3.6952 -7.7819 -6.6841 26 7 -4.8566 -7.4554 -7.2079 27 14 -2.4801 -8.8029 -7.6692 28 1 -1.2566 -9.0334 -6.8599 29 1 -3.0971 -10.1085 -8.0157 30 1 -2.1210 -8.0790 -8.9151 31 1 -0.3635 0.1228 -1.0203 32 1 -0.3633 -0.9451 0.4038 33 1 -0.3634 0.8221 0.6167 34 1 1.6582 2.1310 0.0004 35 1 4.1193 2.1328 0.0100 36 1 5.3561 0.0052 0.0098 37 1 4.5281 -2.8162 1.0289 38 1 3.7649 -3.2611 -0.5164 39 1 5.3031 -2.3654 -0.5088 40 1 1.6938 -3.0859 0.6658 41 1 0.4181 -4.7806 -0.9665 42 1 -0.8006 -3.9565 0.0354 43 1 -1.2020 -3.2011 -2.6565 44 1 -4.5704 -3.7723 -4.1273 45 1 -4.5199 -3.8645 -2.3504 46 1 -3.3226 -2.8795 -3.2247 47 1 -3.2298 -7.0102 -2.9525 48 1 -6.3269 -6.7786 -3.7783 49 1 -6.1283 -7.4803 -5.4021 50 1 -5.4319 -8.3032 -3.9856 51 1 -5.0819 -7.7445 -8.1060 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602864338.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:16 Heat of formation + Delta-G solvation = -71.257393 kcal Electronic energy + Delta-G solvation = -30283.440690 eV Core-core repulsion = 26181.503957 eV Total energy + Delta-G solvation = -4101.936732 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.98619 -40.92949 -39.63776 -37.66259 -36.00774 -35.55725 -34.80356 -34.48025 -32.44177 -31.82701 -29.50895 -28.74504 -27.66566 -27.55853 -27.14930 -24.74396 -23.10850 -22.05801 -21.90335 -21.37236 -21.05193 -19.26359 -18.71024 -18.29297 -17.52207 -17.34308 -17.19901 -16.64441 -16.55498 -16.24192 -15.85082 -15.64123 -15.22685 -14.90641 -14.86210 -14.72839 -14.38991 -14.27735 -14.05709 -13.87940 -13.75456 -13.57316 -13.46372 -13.31436 -13.12046 -12.90836 -12.83236 -12.75934 -12.51708 -12.50451 -12.25534 -12.19773 -12.14873 -12.00722 -11.93624 -11.30704 -11.10051 -10.95910 -10.80406 -10.52039 -10.27177 -9.50443 -9.28552 -9.15928 -8.09226 -6.29359 0.26529 0.40679 1.36378 1.36516 1.39351 1.49477 1.56169 1.63405 2.31249 2.39583 2.76482 3.12977 3.44941 3.61607 3.79844 3.82145 3.88812 4.08830 4.22662 4.26387 4.29990 4.36919 4.42387 4.43693 4.50799 4.56287 4.73540 4.77704 4.78467 4.83763 4.89065 4.92349 4.98727 5.14353 5.16876 5.19692 5.25363 5.29009 5.35190 5.37577 5.45875 5.47765 5.58916 5.60757 5.66095 6.03107 6.06663 6.13318 6.25378 6.26820 6.41338 6.73927 6.95219 6.98202 7.12928 7.41801 8.89892 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016649 B = 0.002041 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.427147 B =13715.827285 C =14360.184398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.091 4.091 3 C -0.127 4.127 4 C -0.119 4.119 5 C -0.123 4.123 6 C -0.100 4.100 7 C -0.114 4.114 8 C 0.115 3.885 9 N -0.658 5.658 10 C 0.516 3.484 11 O -0.544 6.544 12 C 0.103 3.897 13 N -0.712 5.712 14 C 0.529 3.471 15 O -0.562 6.562 16 C 0.069 3.931 17 H 0.058 0.942 18 C -0.124 4.124 19 N -0.671 5.671 20 C 0.213 3.787 21 H 0.016 0.984 22 C -0.112 4.112 23 C -0.560 4.560 24 H 0.045 0.955 25 C 0.022 3.978 26 N -0.909 5.909 27 Si 0.951 3.049 28 H -0.274 1.274 29 H -0.279 1.279 30 H -0.278 1.278 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.137 0.863 35 H 0.146 0.854 36 H 0.147 0.853 37 H 0.089 0.911 38 H 0.061 0.939 39 H 0.077 0.923 40 H 0.426 0.574 41 H 0.111 0.889 42 H 0.117 0.883 43 H 0.415 0.585 44 H 0.055 0.945 45 H 0.063 0.937 46 H 0.081 0.919 47 H 0.334 0.666 48 H 0.030 0.970 49 H 0.058 0.942 50 H 0.021 0.979 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.744 17.714 18.338 31.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.093 4.093 3 C -0.146 4.146 4 C -0.137 4.137 5 C -0.141 4.141 6 C -0.102 4.102 7 C -0.171 4.171 8 C 0.023 3.977 9 N -0.307 5.307 10 C 0.304 3.696 11 O -0.421 6.421 12 C -0.024 4.024 13 N -0.368 5.368 14 C 0.315 3.685 15 O -0.440 6.440 16 C -0.045 4.045 17 H 0.076 0.924 18 C -0.182 4.182 19 N -0.303 5.303 20 C 0.104 3.896 21 H 0.034 0.966 22 C -0.171 4.171 23 C -0.599 4.599 24 H 0.063 0.937 25 C -0.179 4.179 26 N -0.548 5.548 27 Si 0.777 3.223 28 H -0.198 1.198 29 H -0.204 1.204 30 H -0.204 1.204 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.155 0.845 35 H 0.164 0.836 36 H 0.164 0.836 37 H 0.107 0.893 38 H 0.080 0.920 39 H 0.096 0.904 40 H 0.265 0.735 41 H 0.129 0.871 42 H 0.134 0.866 43 H 0.254 0.746 44 H 0.074 0.926 45 H 0.082 0.918 46 H 0.099 0.901 47 H 0.153 0.847 48 H 0.049 0.951 49 H 0.077 0.923 50 H 0.040 0.960 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 17.919 17.890 18.349 31.270 hybrid contribution 1.155 -0.997 -1.355 2.040 sum 19.073 16.892 16.994 30.626 Atomic orbital electron populations 1.20783 0.90961 1.02299 1.02184 1.20090 0.96625 0.92745 0.99838 1.21159 0.94941 0.97348 1.01133 1.21467 0.93995 0.99215 0.99042 1.21220 1.00983 0.91208 1.00708 1.20174 0.91746 0.97505 1.00756 1.20801 0.99958 0.92848 1.03499 1.17430 0.90516 0.85179 1.04615 1.43109 1.38161 1.17783 1.31599 1.20673 0.80080 0.87740 0.81113 1.90737 1.67544 1.48189 1.35583 1.21135 0.92938 0.95859 0.92477 1.45602 1.37521 1.23519 1.30171 1.20713 0.80347 0.81213 0.86180 1.90645 1.70362 1.37066 1.45924 1.21410 0.93614 0.94754 0.94686 0.92434 1.21687 0.99140 0.94640 1.02752 1.60884 1.37016 1.04766 1.27649 1.19037 0.92353 0.94145 0.84060 0.96597 1.21512 0.97700 0.97898 0.99954 1.22104 1.02409 1.34770 1.00585 0.93664 1.25646 0.96822 0.96866 0.98540 1.70010 1.22177 1.46489 1.16101 0.85619 0.79319 0.78762 0.78587 1.19838 1.20446 1.20405 0.91560 0.92737 0.90516 0.84495 0.83579 0.83568 0.89271 0.92011 0.90359 0.73489 0.87136 0.86561 0.74626 0.92557 0.91841 0.90053 0.84721 0.95070 0.92321 0.95999 0.92735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.93 8.27 71.23 0.59 -1.34 16 2 C -0.09 -1.70 5.49 -19.74 -0.11 -1.80 16 3 C -0.13 -1.99 9.72 22.25 0.22 -1.77 16 4 C -0.12 -1.54 10.04 22.29 0.22 -1.32 16 5 C -0.12 -1.57 9.70 22.25 0.22 -1.36 16 6 C -0.10 -1.46 5.90 -19.74 -0.12 -1.58 16 7 C -0.11 -1.14 9.69 71.24 0.69 -0.44 16 8 C 0.12 2.01 5.80 38.15 0.22 2.23 16 9 N -0.66 -9.45 3.86 -303.50 -1.17 -10.62 16 10 C 0.52 9.88 6.09 87.65 0.53 10.41 16 11 O -0.54 -14.09 12.93 -3.05 -0.04 -14.13 16 12 C 0.10 1.96 6.16 85.63 0.53 2.48 16 13 N -0.71 -18.22 5.40 -466.79 -2.52 -20.74 16 14 C 0.53 17.79 7.18 87.66 0.63 18.42 16 15 O -0.56 -21.97 15.73 -3.05 -0.05 -22.02 16 16 C 0.07 2.59 2.86 44.17 0.13 2.71 16 17 H 0.06 2.34 7.79 -2.39 -0.02 2.32 16 18 C -0.12 -3.92 9.26 71.98 0.67 -3.26 16 19 N -0.67 -30.03 5.90 -477.16 -2.81 -32.84 16 20 C 0.21 10.87 2.39 44.17 0.11 10.97 16 21 H 0.02 0.88 6.85 -2.39 -0.02 0.86 16 22 C -0.11 -5.66 9.22 71.98 0.66 -5.00 16 23 C -0.56 -30.95 8.40 25.60 0.22 -30.73 16 24 H 0.05 2.53 7.69 -2.91 -0.02 2.51 16 25 C 0.02 1.20 5.30 84.66 0.45 1.65 16 26 N -0.91 -51.92 11.38 21.45 0.24 -51.67 16 27 Si 0.95 43.91 29.54 68.60 2.03 45.93 16 28 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 29 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 30 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 31 H 0.07 1.46 7.11 -2.39 -0.02 1.45 16 32 H 0.05 0.99 6.30 -2.38 -0.02 0.97 16 33 H 0.08 1.12 8.13 -2.39 -0.02 1.10 16 34 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 35 H 0.15 1.13 8.06 -2.91 -0.02 1.11 16 36 H 0.15 1.16 8.06 -2.91 -0.02 1.14 16 37 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.06 0.68 7.46 -2.39 -0.02 0.66 16 39 H 0.08 0.66 8.09 -2.38 -0.02 0.64 16 40 H 0.43 3.41 8.72 -92.71 -0.81 2.61 16 41 H 0.11 1.92 8.14 -2.38 -0.02 1.90 16 42 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.42 10.27 6.81 -92.71 -0.63 9.64 16 44 H 0.06 1.93 7.23 -2.39 -0.02 1.91 16 45 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.08 2.03 7.46 -2.38 -0.02 2.01 16 47 H 0.33 15.88 7.21 -89.69 -0.65 15.24 16 48 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 49 H 0.06 3.18 6.23 -2.39 -0.01 3.17 16 50 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 51 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -70.53 411.93 0.41 -70.13 By element: Atomic # 1 Polarization: 36.81 SS G_CDS: -1.12 Total: 35.69 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: 5.85 Total: 0.28 kcal Atomic # 7 Polarization: -109.62 SS G_CDS: -6.26 Total: -115.88 kcal Atomic # 8 Polarization: -36.07 SS G_CDS: -0.09 Total: -36.15 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Total: -70.53 0.41 -70.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602864338.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.132 kcal (2) G-P(sol) polarization free energy of solvation -70.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds