Wall clock time and date at job start Wed Apr 1 2020 04:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38281 * 119.92839 * 2 1 4 4 C 1.38109 * 120.07086 * 179.97438 * 3 2 1 5 5 C 1.50697 * 120.03548 * 180.02562 * 4 3 2 6 6 C 1.38874 * 119.92809 * 0.02562 * 4 3 2 7 7 N 1.39927 * 120.06508 * 179.97438 * 6 4 3 8 8 C 1.34783 * 119.99800 * 127.88507 * 7 6 4 9 9 O 1.21286 * 119.99759 * 356.36641 * 8 7 6 10 10 C 1.50697 * 120.00042 * 176.36777 * 8 7 6 11 11 N 1.46501 * 109.47026 * 179.97438 * 10 8 7 12 12 C 1.34780 * 119.99457 * 180.02562 * 11 10 8 13 13 O 1.21275 * 120.00563 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99410 * 179.97438 * 12 11 10 15 15 N 1.46898 * 109.46820 * 179.97438 * 14 12 11 16 16 C 1.46904 * 110.99666 * 179.97438 * 15 14 12 17 17 H 1.08995 * 109.47496 * 325.00022 * 16 15 14 18 18 C 1.53002 * 109.47098 * 85.00615 * 16 15 14 19 19 C 1.50703 * 109.46985 * 205.00282 * 16 15 14 20 20 H 1.07997 * 119.99959 * 359.97438 * 19 16 15 21 21 C 1.37877 * 119.99808 * 180.02562 * 19 16 15 22 22 N 1.31511 * 119.99966 * 359.97438 * 21 19 16 23 23 Si 1.86807 * 119.99884 * 180.02562 * 21 19 16 24 24 H 1.48498 * 109.47070 * 179.97438 * 23 21 19 25 25 H 1.48507 * 109.46713 * 299.99341 * 23 21 19 26 26 H 1.48497 * 109.47008 * 59.99168 * 23 21 19 27 27 C 1.38872 * 119.86075 * 0.26020 * 6 4 3 28 28 C 1.50692 * 120.03453 * 179.74765 * 27 6 4 29 29 C 1.38113 * 119.92465 * 359.46732 * 27 6 4 30 30 H 1.09002 * 109.46966 * 90.01042 * 1 2 3 31 31 H 1.09001 * 109.47001 * 210.00387 * 1 2 3 32 32 H 1.08993 * 109.47330 * 330.00620 * 1 2 3 33 33 H 1.07997 * 119.96190 * 359.97049 * 3 2 1 34 34 H 1.09010 * 109.47008 * 269.97200 * 5 4 3 35 35 H 1.08996 * 109.47417 * 29.96887 * 5 4 3 36 36 H 1.08993 * 109.47521 * 149.97663 * 5 4 3 37 37 H 0.96995 * 120.00183 * 307.87557 * 7 6 4 38 38 H 1.09002 * 109.47098 * 59.99559 * 10 8 7 39 39 H 1.08999 * 109.47006 * 299.99895 * 10 8 7 40 40 H 0.96996 * 119.99987 * 359.97438 * 11 10 8 41 41 H 1.09002 * 109.47240 * 60.00015 * 14 12 11 42 42 H 1.08999 * 109.47491 * 299.99968 * 14 12 11 43 43 H 1.00900 * 111.00016 * 56.05215 * 15 14 12 44 44 H 1.08996 * 109.47105 * 179.97438 * 18 16 15 45 45 H 1.09001 * 109.46731 * 299.99600 * 18 16 15 46 46 H 1.08995 * 109.47432 * 59.99367 * 18 16 15 47 47 H 0.97005 * 119.99762 * 180.02562 * 22 21 19 48 48 H 1.09002 * 109.47339 * 97.89011 * 28 27 6 49 49 H 1.09005 * 109.47087 * 217.88767 * 28 27 6 50 50 H 1.08997 * 109.47357 * 337.89087 * 28 27 6 51 51 H 1.07997 * 119.96287 * 180.27936 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5780 1.2018 0.0005 5 6 4.3291 2.5083 0.0011 6 6 4.2739 0.0000 0.0005 7 7 5.6731 0.0001 0.0005 8 6 6.3471 -0.7166 0.9218 9 8 5.7425 -1.3084 1.7908 10 6 7.8518 -0.7825 0.8721 11 7 8.3406 -1.6166 1.9728 12 6 9.6640 -1.8191 2.1285 13 8 10.4501 -1.3112 1.3572 14 6 10.1669 -2.6766 3.2611 15 7 11.6336 -2.7410 3.2126 16 6 12.1606 -3.5701 4.3048 17 1 11.5389 -3.4418 5.1909 18 6 12.1477 -5.0402 3.8811 19 6 13.5736 -3.1499 4.6177 20 1 14.0343 -2.3476 4.0605 21 6 14.2787 -3.7905 5.6144 22 7 13.7178 -4.7679 6.2925 23 14 16.0300 -3.2692 6.0027 24 1 16.5627 -4.1074 7.1067 25 1 16.8773 -3.4431 4.7955 26 1 16.0420 -1.8426 6.4146 27 6 3.5781 -1.2018 -0.0055 28 6 4.3292 -2.5082 -0.0112 29 6 2.1970 -1.1984 -0.0003 30 1 -0.3633 -0.0002 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5137 33 1 1.6551 2.1327 -0.0005 34 1 4.5110 2.8233 -1.0265 35 1 3.7382 3.2669 0.5144 36 1 5.2813 2.3798 0.5156 37 1 6.1581 0.5159 -0.6625 38 1 8.2629 0.2224 0.9679 39 1 8.1653 -1.2142 -0.0784 40 1 7.7119 -2.0226 2.5899 41 1 9.7561 -3.6818 3.1659 42 1 9.8531 -2.2444 4.2113 43 1 12.0371 -1.8164 3.2340 44 1 12.5390 -5.6553 4.6913 45 1 11.1256 -5.3441 3.6549 46 1 12.7694 -5.1685 2.9951 47 1 14.2137 -5.2183 6.9940 48 1 4.3875 -2.8983 1.0049 49 1 3.8075 -3.2245 -0.6460 50 1 5.3359 -2.3468 -0.3967 51 1 1.6553 -2.1327 -0.0004 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602871176.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:28 Heat of formation + Delta-G solvation = -50.886441 kcal Electronic energy + Delta-G solvation = -29551.242261 eV Core-core repulsion = 25450.188880 eV Total energy + Delta-G solvation = -4101.053382 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.28351 -39.66692 -38.83523 -35.73706 -35.55303 -34.38180 -33.88119 -32.64940 -32.46004 -29.64153 -28.38649 -28.29794 -27.08809 -26.31711 -25.35033 -24.37436 -21.84813 -21.22080 -20.50289 -20.36315 -19.73345 -18.39157 -17.65652 -16.86909 -16.63548 -15.95521 -15.89178 -15.72339 -15.03511 -14.87074 -14.63187 -14.52820 -14.35089 -13.93515 -13.76620 -13.60314 -13.45947 -13.40624 -13.33819 -13.14217 -13.04097 -12.85377 -12.58273 -12.43454 -12.10979 -11.73028 -11.69049 -11.51643 -11.46334 -11.24644 -10.89782 -10.75575 -10.48060 -10.35267 -10.20923 -10.12547 -10.05267 -9.53134 -9.14590 -8.91481 -8.83355 -8.50118 -8.45790 -7.28901 -6.01552 -4.07602 0.85272 1.00881 2.12745 2.45890 2.91002 3.29817 3.32650 3.33981 3.37683 3.41857 4.18723 4.35621 4.38773 4.42613 4.46027 4.85922 4.90141 4.98529 5.00816 5.04640 5.06271 5.14222 5.20562 5.21897 5.27981 5.28963 5.32145 5.42363 5.45653 5.46907 5.53872 5.71135 5.89390 5.92672 5.93711 5.95738 6.07303 6.18636 6.24508 6.31663 6.65594 6.85432 6.89568 7.12793 7.19972 7.43350 7.58196 7.68482 7.80063 7.89123 8.27408 8.37335 8.42384 8.66189 9.02129 9.58149 11.04869 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.026604 B = 0.001614 C = 0.001569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.239868 B =17338.891476 C =17837.524959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.084 4.084 3 C -0.117 4.117 4 C -0.088 4.088 5 C -0.115 4.115 6 C 0.130 3.870 7 N -0.673 5.673 8 C 0.509 3.491 9 O -0.512 6.512 10 C 0.105 3.895 11 N -0.730 5.730 12 C 0.518 3.482 13 O -0.525 6.525 14 C 0.045 3.955 15 N -0.672 5.672 16 C 0.211 3.789 17 H 0.003 0.997 18 C -0.125 4.125 19 C -0.518 4.518 20 H 0.061 0.939 21 C 0.062 3.938 22 N -0.891 5.891 23 Si 0.899 3.101 24 H -0.288 1.288 25 H -0.276 1.276 26 H -0.278 1.278 27 C -0.064 4.064 28 C -0.110 4.110 29 C -0.115 4.115 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.124 0.876 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.411 0.589 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.411 0.589 41 H 0.095 0.905 42 H 0.051 0.949 43 H 0.340 0.660 44 H 0.082 0.918 45 H 0.004 0.996 46 H 0.033 0.967 47 H 0.261 0.739 48 H 0.086 0.914 49 H 0.062 0.938 50 H 0.057 0.943 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.592 11.777 -15.124 33.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.085 4.085 3 C -0.135 4.135 4 C -0.090 4.090 5 C -0.172 4.172 6 C 0.038 3.962 7 N -0.321 5.321 8 C 0.296 3.704 9 O -0.386 6.386 10 C -0.023 4.023 11 N -0.388 5.388 12 C 0.305 3.695 13 O -0.399 6.399 14 C -0.088 4.088 15 N -0.305 5.305 16 C 0.104 3.896 17 H 0.021 0.979 18 C -0.184 4.184 19 C -0.557 4.557 20 H 0.079 0.921 21 C -0.140 4.140 22 N -0.529 5.529 23 Si 0.727 3.273 24 H -0.213 1.213 25 H -0.201 1.201 26 H -0.203 1.203 27 C -0.066 4.066 28 C -0.166 4.166 29 C -0.134 4.134 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.142 0.858 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.248 0.752 38 H 0.116 0.884 39 H 0.117 0.883 40 H 0.248 0.752 41 H 0.113 0.887 42 H 0.069 0.931 43 H 0.159 0.841 44 H 0.100 0.900 45 H 0.023 0.977 46 H 0.052 0.948 47 H 0.071 0.929 48 H 0.104 0.896 49 H 0.081 0.919 50 H 0.076 0.924 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -27.312 11.040 -15.338 33.213 hybrid contribution 0.634 0.894 0.916 1.428 sum -26.678 11.934 -14.422 32.591 Atomic orbital electron populations 1.20784 0.91034 1.02885 1.02317 1.19898 0.96149 0.92939 0.99466 1.20724 0.92693 0.97736 1.02368 1.19819 0.93939 0.94107 1.01171 1.20755 1.00259 0.93799 1.02401 1.17199 0.82164 0.92680 1.04194 1.43294 1.04736 1.50451 1.33591 1.20790 0.90151 0.78407 0.81015 1.90739 1.69746 1.43354 1.34723 1.20931 0.89274 0.98459 0.93668 1.45820 1.08317 1.53018 1.31667 1.21127 0.80808 0.80855 0.86711 1.90677 1.55142 1.49254 1.44876 1.21793 0.93936 0.99175 0.93875 1.60533 1.00153 1.18987 1.50801 1.19173 0.94391 0.90254 0.85798 0.97939 1.21732 0.96435 0.99010 1.01189 1.21212 0.98250 1.18469 1.17737 0.92085 1.24911 0.98336 0.94906 0.95830 1.69886 1.37221 1.23018 1.22811 0.86550 0.84491 0.78424 0.77870 1.21325 1.20147 1.20327 1.19847 0.93750 0.94470 0.98529 1.20873 0.99107 0.93493 1.03152 1.20767 0.92817 0.97815 1.01974 0.91139 0.91460 0.91519 0.85760 0.90955 0.91120 0.91468 0.75194 0.88387 0.88253 0.75209 0.88698 0.93118 0.84113 0.89961 0.97736 0.94792 0.92867 0.89573 0.91887 0.92402 0.85733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.58 10.01 36.01 0.36 -0.22 16 2 C -0.08 -0.64 5.88 -104.59 -0.62 -1.26 16 3 C -0.12 -0.87 9.35 -39.61 -0.37 -1.24 16 4 C -0.09 -0.70 5.90 -104.44 -0.62 -1.32 16 5 C -0.12 -0.65 9.67 36.00 0.35 -0.30 16 6 C 0.13 1.18 5.84 -83.69 -0.49 0.69 16 7 N -0.67 -5.08 3.91 -9.86 -0.04 -5.12 16 8 C 0.51 4.93 6.05 -10.98 -0.07 4.86 16 9 O -0.51 -6.50 12.74 5.55 0.07 -6.43 16 10 C 0.10 1.02 6.16 -5.19 -0.03 0.99 16 11 N -0.73 -9.17 5.53 -61.47 -0.34 -9.51 16 12 C 0.52 8.49 7.87 -10.98 -0.09 8.41 16 13 O -0.53 -10.29 16.20 5.56 0.09 -10.20 16 14 C 0.05 0.81 5.97 -4.98 -0.03 0.78 16 15 N -0.67 -15.02 5.93 -109.22 -0.65 -15.67 16 16 C 0.21 5.40 2.60 -68.86 -0.18 5.22 16 17 H 0.00 0.08 7.80 -51.93 -0.40 -0.32 16 18 C -0.13 -3.14 9.19 37.16 0.34 -2.80 16 19 C -0.52 -14.44 8.59 -34.44 -0.30 -14.73 16 20 H 0.06 1.69 7.62 -52.49 -0.40 1.29 16 21 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 22 N -0.89 -25.45 11.32 55.43 0.63 -24.82 16 23 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 C -0.06 -0.62 5.48 -104.44 -0.57 -1.19 16 28 C -0.11 -1.03 8.22 36.00 0.30 -0.73 16 29 C -0.12 -0.98 9.38 -39.61 -0.37 -1.35 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 32 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 33 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 34 H 0.07 0.30 8.14 -51.92 -0.42 -0.12 16 35 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 36 H 0.07 0.39 7.45 -51.93 -0.39 0.01 16 37 H 0.41 1.90 8.68 -40.82 -0.35 1.55 16 38 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.41 4.87 7.44 -40.82 -0.30 4.57 16 41 H 0.10 1.62 7.44 -51.93 -0.39 1.23 16 42 H 0.05 0.86 8.05 -51.93 -0.42 0.44 16 43 H 0.34 7.76 7.92 -39.29 -0.31 7.45 16 44 H 0.08 2.22 6.07 -51.93 -0.32 1.91 16 45 H 0.00 0.08 7.45 -51.93 -0.39 -0.30 16 46 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 48 H 0.09 0.94 7.10 -51.93 -0.37 0.57 16 49 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 50 H 0.06 0.55 6.16 -51.93 -0.32 0.23 16 51 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 LS Contribution 414.63 15.07 6.25 6.25 Total: -1.00 -33.70 414.63 -9.61 -43.31 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -8.13 Total: 8.26 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -2.47 Total: -2.56 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: -0.40 Total: -55.12 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: 0.16 Total: -16.63 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -33.70 -9.61 -43.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602871176.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.575 kcal (2) G-P(sol) polarization free energy of solvation -33.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds