Wall clock time and date at job start Wed Apr 1 2020 04:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38281 * 119.92839 * 2 1 4 4 C 1.38109 * 120.07086 * 179.97438 * 3 2 1 5 5 C 1.50697 * 120.03548 * 180.02562 * 4 3 2 6 6 C 1.38874 * 119.92809 * 0.02562 * 4 3 2 7 7 N 1.39927 * 120.06508 * 179.97438 * 6 4 3 8 8 C 1.34783 * 119.99800 * 127.88507 * 7 6 4 9 9 O 1.21286 * 119.99759 * 356.36641 * 8 7 6 10 10 C 1.50697 * 120.00042 * 176.36777 * 8 7 6 11 11 N 1.46501 * 109.47026 * 179.97438 * 10 8 7 12 12 C 1.34780 * 119.99457 * 180.02562 * 11 10 8 13 13 O 1.21275 * 120.00563 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99410 * 179.97438 * 12 11 10 15 15 N 1.46898 * 109.46820 * 179.97438 * 14 12 11 16 16 C 1.46904 * 110.99666 * 179.97438 * 15 14 12 17 17 H 1.08995 * 109.47496 * 325.00022 * 16 15 14 18 18 C 1.53002 * 109.47098 * 85.00615 * 16 15 14 19 19 C 1.50703 * 109.46985 * 205.00282 * 16 15 14 20 20 H 1.07997 * 119.99959 * 359.97438 * 19 16 15 21 21 C 1.37877 * 119.99808 * 180.02562 * 19 16 15 22 22 N 1.31511 * 119.99966 * 359.97438 * 21 19 16 23 23 Si 1.86807 * 119.99884 * 180.02562 * 21 19 16 24 24 H 1.48498 * 109.47070 * 179.97438 * 23 21 19 25 25 H 1.48507 * 109.46713 * 299.99341 * 23 21 19 26 26 H 1.48497 * 109.47008 * 59.99168 * 23 21 19 27 27 C 1.38872 * 119.86075 * 0.26020 * 6 4 3 28 28 C 1.50692 * 120.03453 * 179.74765 * 27 6 4 29 29 C 1.38113 * 119.92465 * 359.46732 * 27 6 4 30 30 H 1.09002 * 109.46966 * 90.01042 * 1 2 3 31 31 H 1.09001 * 109.47001 * 210.00387 * 1 2 3 32 32 H 1.08993 * 109.47330 * 330.00620 * 1 2 3 33 33 H 1.07997 * 119.96190 * 359.97049 * 3 2 1 34 34 H 1.09010 * 109.47008 * 269.97200 * 5 4 3 35 35 H 1.08996 * 109.47417 * 29.96887 * 5 4 3 36 36 H 1.08993 * 109.47521 * 149.97663 * 5 4 3 37 37 H 0.96995 * 120.00183 * 307.87557 * 7 6 4 38 38 H 1.09002 * 109.47098 * 59.99559 * 10 8 7 39 39 H 1.08999 * 109.47006 * 299.99895 * 10 8 7 40 40 H 0.96996 * 119.99987 * 359.97438 * 11 10 8 41 41 H 1.09002 * 109.47240 * 60.00015 * 14 12 11 42 42 H 1.08999 * 109.47491 * 299.99968 * 14 12 11 43 43 H 1.00900 * 111.00016 * 56.05215 * 15 14 12 44 44 H 1.08996 * 109.47105 * 179.97438 * 18 16 15 45 45 H 1.09001 * 109.46731 * 299.99600 * 18 16 15 46 46 H 1.08995 * 109.47432 * 59.99367 * 18 16 15 47 47 H 0.97005 * 119.99762 * 180.02562 * 22 21 19 48 48 H 1.09002 * 109.47339 * 97.89011 * 28 27 6 49 49 H 1.09005 * 109.47087 * 217.88767 * 28 27 6 50 50 H 1.08997 * 109.47357 * 337.89087 * 28 27 6 51 51 H 1.07997 * 119.96287 * 180.27936 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5780 1.2018 0.0005 5 6 4.3291 2.5083 0.0011 6 6 4.2739 0.0000 0.0005 7 7 5.6731 0.0001 0.0005 8 6 6.3471 -0.7166 0.9218 9 8 5.7425 -1.3084 1.7908 10 6 7.8518 -0.7825 0.8721 11 7 8.3406 -1.6166 1.9728 12 6 9.6640 -1.8191 2.1285 13 8 10.4501 -1.3112 1.3572 14 6 10.1669 -2.6766 3.2611 15 7 11.6336 -2.7410 3.2126 16 6 12.1606 -3.5701 4.3048 17 1 11.5389 -3.4418 5.1909 18 6 12.1477 -5.0402 3.8811 19 6 13.5736 -3.1499 4.6177 20 1 14.0343 -2.3476 4.0605 21 6 14.2787 -3.7905 5.6144 22 7 13.7178 -4.7679 6.2925 23 14 16.0300 -3.2692 6.0027 24 1 16.5627 -4.1074 7.1067 25 1 16.8773 -3.4431 4.7955 26 1 16.0420 -1.8426 6.4146 27 6 3.5781 -1.2018 -0.0055 28 6 4.3292 -2.5082 -0.0112 29 6 2.1970 -1.1984 -0.0003 30 1 -0.3633 -0.0002 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5137 33 1 1.6551 2.1327 -0.0005 34 1 4.5110 2.8233 -1.0265 35 1 3.7382 3.2669 0.5144 36 1 5.2813 2.3798 0.5156 37 1 6.1581 0.5159 -0.6625 38 1 8.2629 0.2224 0.9679 39 1 8.1653 -1.2142 -0.0784 40 1 7.7119 -2.0226 2.5899 41 1 9.7561 -3.6818 3.1659 42 1 9.8531 -2.2444 4.2113 43 1 12.0371 -1.8164 3.2340 44 1 12.5390 -5.6553 4.6913 45 1 11.1256 -5.3441 3.6549 46 1 12.7694 -5.1685 2.9951 47 1 14.2137 -5.2183 6.9940 48 1 4.3875 -2.8983 1.0049 49 1 3.8075 -3.2245 -0.6460 50 1 5.3359 -2.3468 -0.3967 51 1 1.6553 -2.1327 -0.0004 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602871176.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:26 Heat of formation + Delta-G solvation = -73.690871 kcal Electronic energy + Delta-G solvation = -29552.231136 eV Core-core repulsion = 25450.188880 eV Total energy + Delta-G solvation = -4102.042256 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.00429 -40.75661 -39.73481 -37.47670 -36.33667 -35.49346 -34.49694 -34.46099 -33.23540 -31.25291 -29.55457 -28.87441 -27.66796 -27.52414 -26.99034 -25.81677 -22.60451 -21.89418 -21.73415 -21.49465 -21.09543 -19.38196 -18.68011 -18.20910 -17.52268 -17.32659 -17.05728 -16.78813 -16.59273 -16.02723 -15.56577 -15.38694 -15.21021 -15.08739 -14.89092 -14.71725 -14.43718 -14.17253 -14.13336 -14.00752 -13.94468 -13.84695 -13.52600 -13.39552 -13.20940 -13.07134 -12.80465 -12.68473 -12.65051 -12.30818 -12.27186 -12.17998 -12.08449 -12.04020 -12.00507 -11.26331 -11.02836 -10.90426 -10.83283 -10.55540 -10.24641 -9.51793 -9.11552 -9.08855 -8.12925 -6.26479 0.23498 0.39880 1.37205 1.43634 1.45699 1.53252 1.59832 1.63922 2.31229 2.44253 2.70719 3.15690 3.46039 3.69016 3.81022 3.81903 3.89426 3.93468 4.24242 4.32095 4.33542 4.39673 4.44153 4.47189 4.48368 4.50131 4.67570 4.70565 4.75263 4.79138 4.84655 4.86416 4.97378 5.08735 5.09632 5.17206 5.19439 5.22798 5.30004 5.40381 5.45011 5.48414 5.56462 5.66065 5.67188 5.84611 6.06667 6.22229 6.26658 6.36710 6.45145 6.73631 6.94650 6.99117 7.18889 7.43342 8.92465 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.026604 B = 0.001614 C = 0.001569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.239868 B =17338.891476 C =17837.524959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.088 4.088 3 C -0.124 4.124 4 C -0.094 4.094 5 C -0.114 4.114 6 C 0.110 3.890 7 N -0.656 5.656 8 C 0.515 3.485 9 O -0.545 6.545 10 C 0.104 3.896 11 N -0.715 5.715 12 C 0.527 3.473 13 O -0.559 6.559 14 C 0.042 3.958 15 N -0.677 5.677 16 C 0.214 3.786 17 H -0.019 1.019 18 C -0.114 4.114 19 C -0.541 4.541 20 H 0.056 0.944 21 C 0.016 3.984 22 N -0.915 5.915 23 Si 0.963 3.037 24 H -0.282 1.282 25 H -0.274 1.274 26 H -0.271 1.271 27 C -0.085 4.085 28 C -0.104 4.104 29 C -0.130 4.130 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.145 0.855 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.426 0.574 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.415 0.585 41 H 0.104 0.896 42 H 0.062 0.938 43 H 0.336 0.664 44 H 0.060 0.940 45 H 0.027 0.973 46 H 0.024 0.976 47 H 0.264 0.736 48 H 0.067 0.933 49 H 0.073 0.927 50 H 0.053 0.947 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.622 13.237 -16.019 35.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.089 4.089 3 C -0.143 4.143 4 C -0.095 4.095 5 C -0.170 4.170 6 C 0.017 3.983 7 N -0.305 5.305 8 C 0.303 3.697 9 O -0.421 6.421 10 C -0.023 4.023 11 N -0.372 5.372 12 C 0.314 3.686 13 O -0.437 6.437 14 C -0.090 4.090 15 N -0.309 5.309 16 C 0.106 3.894 17 H -0.001 1.001 18 C -0.173 4.173 19 C -0.579 4.579 20 H 0.074 0.926 21 C -0.184 4.184 22 N -0.553 5.553 23 Si 0.788 3.212 24 H -0.207 1.207 25 H -0.199 1.199 26 H -0.197 1.197 27 C -0.087 4.087 28 C -0.160 4.160 29 C -0.148 4.148 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.163 0.837 34 H 0.107 0.893 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.265 0.735 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.254 0.746 41 H 0.122 0.878 42 H 0.080 0.920 43 H 0.154 0.846 44 H 0.079 0.921 45 H 0.046 0.954 46 H 0.043 0.957 47 H 0.073 0.927 48 H 0.085 0.915 49 H 0.092 0.908 50 H 0.072 0.928 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -28.393 12.525 -16.268 35.038 hybrid contribution 0.798 0.471 1.158 1.483 sum -27.595 12.996 -15.110 34.040 Atomic orbital electron populations 1.20828 0.89294 1.03554 1.03199 1.20237 0.97541 0.92688 0.98420 1.21058 0.92773 0.98603 1.01836 1.20126 0.94442 0.94608 1.00364 1.20799 0.99885 0.92805 1.03548 1.17389 0.82553 0.93095 1.05240 1.43105 1.04476 1.49735 1.33182 1.20694 0.89916 0.78187 0.80900 1.90737 1.70216 1.44947 1.36236 1.21102 0.89369 0.98759 0.93027 1.45616 1.07019 1.52430 1.32129 1.20670 0.81710 0.80419 0.85843 1.90668 1.56235 1.50810 1.45968 1.21844 0.91390 1.00444 0.95345 1.60409 1.02854 1.18381 1.49239 1.19001 0.93380 0.91043 0.85941 1.00103 1.21563 0.97517 0.98442 0.99768 1.21525 0.99578 1.18670 1.18172 0.92620 1.25689 1.02198 0.94869 0.95613 1.69999 1.38625 1.23666 1.23059 0.85547 0.79694 0.78283 0.77692 1.20684 1.19889 1.19651 1.20025 0.94465 0.94675 0.99537 1.20781 0.99124 0.93996 1.02135 1.20980 0.92673 0.98801 1.02363 0.90050 0.91154 0.90519 0.83727 0.89275 0.90315 0.91774 0.73491 0.86899 0.86977 0.74625 0.87764 0.91989 0.84644 0.92133 0.95381 0.95654 0.92736 0.91484 0.90776 0.92820 0.84884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.01 71.24 0.71 -0.23 16 2 C -0.09 -1.23 5.88 -19.84 -0.12 -1.35 16 3 C -0.12 -1.64 9.35 22.25 0.21 -1.43 16 4 C -0.09 -1.34 5.90 -19.74 -0.12 -1.46 16 5 C -0.11 -1.04 9.67 71.23 0.69 -0.35 16 6 C 0.11 1.90 5.84 38.15 0.22 2.12 16 7 N -0.66 -9.15 3.91 -303.50 -1.19 -10.34 16 8 C 0.52 9.50 6.05 87.65 0.53 10.03 16 9 O -0.54 -13.71 12.74 -3.05 -0.04 -13.75 16 10 C 0.10 1.89 6.16 85.63 0.53 2.42 16 11 N -0.72 -17.17 5.53 -466.79 -2.58 -19.75 16 12 C 0.53 16.84 7.87 87.66 0.69 17.53 16 13 O -0.56 -21.54 16.20 -3.01 -0.05 -21.59 16 14 C 0.04 1.49 5.97 85.56 0.51 2.00 16 15 N -0.68 -30.34 5.93 -499.45 -2.96 -33.30 16 16 C 0.21 11.09 2.60 44.17 0.11 11.21 16 17 H -0.02 -1.02 7.80 -2.39 -0.02 -1.04 16 18 C -0.11 -5.76 9.19 71.98 0.66 -5.10 16 19 C -0.54 -30.43 8.59 25.60 0.22 -30.21 16 20 H 0.06 3.11 7.62 -2.91 -0.02 3.09 16 21 C 0.02 0.88 5.30 84.65 0.45 1.33 16 22 N -0.91 -52.60 11.32 21.45 0.24 -52.35 16 23 Si 0.96 44.05 29.54 68.60 2.03 46.08 16 24 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 25 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 26 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 27 C -0.09 -1.62 5.48 -19.74 -0.11 -1.73 16 28 C -0.10 -1.96 8.22 71.23 0.59 -1.38 16 29 C -0.13 -2.14 9.38 22.25 0.21 -1.93 16 30 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.07 0.55 8.08 -2.39 -0.02 0.53 16 32 H 0.08 0.49 8.08 -2.39 -0.02 0.47 16 33 H 0.14 1.23 8.06 -2.91 -0.02 1.21 16 34 H 0.09 0.52 8.14 -2.38 -0.02 0.50 16 35 H 0.08 0.60 8.09 -2.39 -0.02 0.58 16 36 H 0.06 0.63 7.45 -2.39 -0.02 0.61 16 37 H 0.43 3.22 8.68 -92.71 -0.80 2.42 16 38 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.42 9.48 7.44 -92.71 -0.69 8.79 16 41 H 0.10 3.46 7.44 -2.39 -0.02 3.44 16 42 H 0.06 2.07 8.05 -2.39 -0.02 2.05 16 43 H 0.34 15.46 7.92 -89.69 -0.71 14.75 16 44 H 0.06 3.31 6.07 -2.39 -0.01 3.29 16 45 H 0.03 1.22 7.45 -2.39 -0.02 1.20 16 46 H 0.02 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.26 14.39 8.31 -92.70 -0.77 13.62 16 48 H 0.07 1.52 7.10 -2.39 -0.02 1.50 16 49 H 0.07 1.15 8.13 -2.38 -0.02 1.13 16 50 H 0.05 1.01 6.16 -2.39 -0.01 1.00 16 51 H 0.13 1.81 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -72.27 414.63 0.21 -72.06 By element: Atomic # 1 Polarization: 32.69 SS G_CDS: -1.24 Total: 31.46 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: 5.99 Total: 1.48 kcal Atomic # 7 Polarization: -109.25 SS G_CDS: -6.48 Total: -115.74 kcal Atomic # 8 Polarization: -35.25 SS G_CDS: -0.09 Total: -35.34 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -72.27 0.21 -72.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602871176.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.629 kcal (2) G-P(sol) polarization free energy of solvation -72.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds