Wall clock time and date at job start Wed Apr 1 2020 05:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35902 * 117.00093 * 2 1 4 4 C 1.38753 * 120.05633 * 0.30077 * 3 2 1 5 5 C 1.38116 * 119.94759 * 180.20792 * 4 3 2 6 6 C 1.50696 * 119.97620 * 179.78324 * 5 4 3 7 7 N 1.46496 * 109.47617 * 269.72251 * 6 5 4 8 8 C 1.34779 * 120.00313 * 179.71856 * 7 6 5 9 9 O 1.21583 * 119.99696 * 0.28356 * 8 7 6 10 10 N 1.34773 * 119.99879 * 180.27343 * 8 7 6 11 11 C 1.46505 * 119.99821 * 180.02562 * 10 8 7 12 12 C 1.53046 * 109.45754 * 275.03345 * 11 10 8 13 13 C 1.53190 * 109.30700 * 178.60307 * 12 11 10 14 14 N 1.46918 * 108.77102 * 54.65309 * 13 12 11 15 15 C 1.36934 * 120.63479 * 126.40384 * 14 13 12 16 16 H 1.08007 * 119.99941 * 331.82556 * 15 14 13 17 17 C 1.38808 * 120.00518 * 151.82836 * 15 14 13 18 18 N 1.31622 * 119.99884 * 343.07434 * 17 15 14 19 19 Si 1.86801 * 120.00437 * 163.07501 * 17 15 14 20 20 H 1.48505 * 109.47262 * 90.00000 * 19 17 15 21 21 H 1.48498 * 109.47273 * 209.99910 * 19 17 15 22 22 H 1.48498 * 109.46865 * 329.99872 * 19 17 15 23 23 C 1.46930 * 118.74011 * 306.38730 * 14 13 12 24 24 C 1.53040 * 109.45855 * 154.97661 * 11 10 8 25 25 C 1.38290 * 120.05111 * 359.50782 * 5 4 3 26 26 C 1.38249 * 120.11527 * 0.23614 * 25 5 4 27 27 C 1.38162 * 120.05062 * 359.97438 * 26 25 5 28 28 C 1.50703 * 120.02338 * 180.02562 * 27 26 25 29 29 H 1.08994 * 109.47179 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47590 * 300.00503 * 1 2 3 31 31 H 1.09000 * 109.46773 * 60.00115 * 1 2 3 32 32 H 1.07998 * 120.02668 * 359.97438 * 4 3 2 33 33 H 1.09007 * 109.47086 * 149.72446 * 6 5 4 34 34 H 1.09003 * 109.47008 * 29.72994 * 6 5 4 35 35 H 0.97006 * 119.99368 * 0.02562 * 7 6 5 36 36 H 0.97000 * 120.00592 * 0.02562 * 10 8 7 37 37 H 1.08995 * 109.45886 * 35.00319 * 11 10 8 38 38 H 1.09004 * 109.49345 * 298.56122 * 12 11 10 39 39 H 1.08993 * 109.50056 * 58.66547 * 12 11 10 40 40 H 1.08997 * 109.59780 * 294.86243 * 13 12 11 41 41 H 1.08997 * 109.70281 * 174.50361 * 13 12 11 42 42 H 0.96998 * 120.00308 * 180.02562 * 18 17 15 43 43 H 1.09010 * 109.58213 * 293.81791 * 23 14 13 44 44 H 1.08998 * 109.70929 * 173.46443 * 23 14 13 45 45 H 1.08996 * 109.49929 * 301.33975 * 24 11 10 46 46 H 1.08999 * 109.49613 * 61.40112 * 24 11 10 47 47 H 1.08005 * 119.94277 * 180.25313 * 25 5 4 48 48 H 1.07998 * 119.97131 * 180.02562 * 26 25 5 49 49 H 1.09000 * 109.47177 * 89.99898 * 28 27 26 50 50 H 1.08999 * 109.46715 * 209.99492 * 28 27 26 51 51 H 1.08995 * 109.47266 * 329.99671 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 0.0063 5 6 1.9208 3.6047 0.0019 6 6 1.1020 4.8698 0.0039 7 7 0.8361 5.2817 -1.3767 8 6 0.1112 6.3912 -1.6212 9 8 -0.3178 7.0532 -0.6961 10 7 -0.1379 6.7670 -2.8913 11 6 -0.9255 7.9735 -3.1571 12 6 -2.4159 7.6276 -3.1212 13 6 -3.2367 8.8979 -3.3649 14 7 -2.7908 9.5150 -4.6215 15 6 -3.6902 9.8134 -5.6099 16 1 -4.5965 9.2341 -5.7083 17 6 -3.4373 10.8602 -6.4857 18 7 -2.5314 11.7663 -6.1841 19 14 -4.3825 10.9832 -8.0922 20 1 -5.6144 11.7853 -7.8817 21 1 -3.5329 11.6409 -9.1173 22 1 -4.7515 9.6213 -8.5549 23 6 -1.3614 9.8064 -4.7972 24 6 -0.5616 8.5260 -4.5372 25 6 3.3019 3.6757 0.0016 26 6 4.0560 2.5170 0.0007 27 6 3.4311 1.2848 0.0006 28 6 4.2538 0.0221 0.0002 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 0.2129 2.3204 0.0108 33 1 1.6519 5.6578 0.5186 34 1 0.1576 4.6905 0.5179 35 1 1.1782 4.7532 -2.1148 36 1 0.2041 6.2388 -3.6294 37 1 -0.7084 8.7236 -2.3968 38 1 -2.6383 6.8959 -3.8980 39 1 -2.6696 7.2123 -2.1460 40 1 -3.0844 9.5952 -2.5412 41 1 -4.2941 8.6438 -3.4378 42 1 -2.3549 12.4980 -6.7959 43 1 -1.0562 10.5779 -4.0902 44 1 -1.1789 10.1508 -5.8151 45 1 0.5046 8.7501 -4.5698 46 1 -0.8011 7.7855 -5.3002 47 1 3.7922 4.6381 0.0023 48 1 5.1344 2.5752 0.0008 49 1 4.4524 -0.2824 1.0278 50 1 3.7062 -0.7680 -0.5135 51 1 5.1976 0.2036 -0.5139 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609335952.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:48:22 Heat of formation + Delta-G solvation = -27.908530 kcal Electronic energy + Delta-G solvation = -29872.656375 eV Core-core repulsion = 25772.599391 eV Total energy + Delta-G solvation = -4100.056985 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.76488 -39.88351 -38.11935 -37.40457 -35.23248 -34.30215 -32.98194 -31.94179 -30.57025 -30.11936 -29.45525 -28.28074 -27.88618 -25.22077 -24.37428 -22.64533 -22.26866 -21.95202 -21.35520 -20.57840 -19.41660 -18.45833 -17.66644 -16.89783 -16.65545 -16.26301 -16.10855 -15.85740 -15.27237 -14.88138 -14.69479 -14.43764 -14.31459 -14.06134 -13.89651 -13.68842 -13.52716 -13.23596 -13.02644 -12.88973 -12.65358 -12.49871 -12.38669 -12.29745 -12.22121 -11.70547 -11.48830 -11.42860 -11.20041 -11.09854 -10.83189 -10.69648 -10.47892 -10.25237 -10.05210 -10.01016 -9.73665 -9.52650 -9.19920 -9.14790 -8.57844 -8.50027 -8.41621 -6.66275 -5.78288 -3.20161 0.79224 1.03760 2.82144 2.86550 3.37586 3.39135 3.40651 3.44797 3.47032 4.19979 4.38708 4.43357 4.50561 4.58751 4.66019 4.75829 4.80995 4.85226 5.09637 5.16217 5.27376 5.30456 5.33161 5.34990 5.37193 5.44757 5.53254 5.56555 5.64490 5.80071 5.88710 5.92983 6.07275 6.11179 6.21173 6.31853 6.36259 6.38811 6.41531 6.52880 6.60404 6.64138 6.82987 6.93236 6.96688 7.01725 7.14135 7.34180 7.63950 7.80460 8.17106 8.46114 8.77735 9.22231 9.85629 10.42935 11.30700 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021500 B = 0.001742 C = 0.001709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.037337 B =16069.775642 C =16382.574390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.315 6.315 3 C 0.123 3.877 4 C -0.184 4.184 5 C -0.072 4.072 6 C 0.181 3.819 7 N -0.748 5.748 8 C 0.702 3.298 9 O -0.591 6.591 10 N -0.739 5.739 11 C 0.169 3.831 12 C -0.139 4.139 13 C 0.147 3.853 14 N -0.593 5.593 15 C -0.251 4.251 16 H 0.065 0.935 17 C 0.001 3.999 18 N -0.903 5.903 19 Si 0.902 3.098 20 H -0.287 1.287 21 H -0.290 1.290 22 H -0.280 1.280 23 C 0.175 3.825 24 C -0.146 4.146 25 C -0.132 4.132 26 C -0.086 4.086 27 C -0.112 4.112 28 C -0.106 4.106 29 H 0.100 0.900 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.130 0.870 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.395 0.605 36 H 0.391 0.609 37 H 0.081 0.919 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.020 0.980 41 H 0.055 0.945 42 H 0.254 0.746 43 H 0.021 0.979 44 H 0.091 0.909 45 H 0.054 0.946 46 H 0.059 0.941 47 H 0.127 0.873 48 H 0.131 0.869 49 H 0.068 0.932 50 H 0.070 0.930 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.628 -24.067 12.178 30.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.229 6.229 3 C 0.078 3.922 4 C -0.203 4.203 5 C -0.072 4.072 6 C 0.057 3.943 7 N -0.405 5.405 8 C 0.402 3.598 9 O -0.469 6.469 10 N -0.392 5.392 11 C 0.065 3.935 12 C -0.179 4.179 13 C 0.020 3.980 14 N -0.315 5.315 15 C -0.381 4.381 16 H 0.083 0.917 17 C -0.197 4.197 18 N -0.548 5.548 19 Si 0.732 3.268 20 H -0.214 1.214 21 H -0.216 1.216 22 H -0.205 1.205 23 C 0.048 3.952 24 C -0.186 4.186 25 C -0.151 4.151 26 C -0.104 4.104 27 C -0.113 4.113 28 C -0.163 4.163 29 H 0.119 0.881 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.148 0.852 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.228 0.772 36 H 0.224 0.776 37 H 0.099 0.901 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.038 0.962 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.039 0.961 44 H 0.109 0.891 45 H 0.072 0.928 46 H 0.077 0.923 47 H 0.145 0.855 48 H 0.149 0.851 49 H 0.087 0.913 50 H 0.088 0.912 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 13.319 -23.455 12.947 29.919 hybrid contribution -0.405 -0.260 -1.506 1.581 sum 12.914 -23.715 11.440 29.327 Atomic orbital electron populations 1.23090 0.78153 1.04072 1.01622 1.86055 1.21466 1.26658 1.88683 1.18806 0.91770 0.84227 0.97437 1.21174 1.00214 0.91626 1.07332 1.19683 0.93910 0.93862 0.99759 1.19960 0.98649 0.92548 0.83111 1.45163 1.58995 1.28244 1.08114 1.16012 0.78998 0.80836 0.83993 1.90923 1.57150 1.55522 1.43284 1.45550 1.58141 1.30224 1.05294 1.20911 0.90041 0.84496 0.98035 1.22389 0.95165 1.00098 1.00296 1.20876 0.96296 0.91631 0.89155 1.44088 1.02832 1.71303 1.13316 1.19175 1.02444 1.09905 1.06551 0.91709 1.25054 0.99212 0.95059 1.00402 1.70025 1.36147 1.12729 1.35876 0.86308 0.79215 0.77631 0.83681 1.21398 1.21588 1.20543 1.20740 0.82163 0.90061 1.02241 1.22542 0.99796 1.01634 0.94635 1.21035 0.93000 0.98775 1.02267 1.20900 0.99949 0.90887 0.98643 1.19333 0.90639 0.96355 1.04948 1.20623 0.98767 0.94530 1.02338 0.88130 0.92514 0.92477 0.85170 0.90622 0.90951 0.77187 0.77642 0.90070 0.92509 0.92741 0.96162 0.92629 0.93622 0.96081 0.89052 0.92778 0.92266 0.85479 0.85148 0.91338 0.91150 0.91587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.32 -2.66 9.54 -19.43 -0.19 -2.84 16 3 C 0.12 1.09 6.66 -39.22 -0.26 0.83 16 4 C -0.18 -1.57 8.69 -39.44 -0.34 -1.91 16 5 C -0.07 -0.62 5.25 -104.65 -0.55 -1.17 16 6 C 0.18 1.84 5.80 -5.20 -0.03 1.81 16 7 N -0.75 -8.21 5.55 -66.42 -0.37 -8.58 16 8 C 0.70 10.61 8.53 -86.92 -0.74 9.87 16 9 O -0.59 -11.48 16.01 5.29 0.08 -11.39 16 10 N -0.74 -10.61 5.08 -58.63 -0.30 -10.90 16 11 C 0.17 3.00 2.42 -67.88 -0.16 2.84 16 12 C -0.14 -2.60 5.65 -26.61 -0.15 -2.75 16 13 C 0.15 3.22 6.52 -3.72 -0.02 3.20 16 14 N -0.59 -14.90 2.99 -172.32 -0.52 -15.42 16 15 C -0.25 -6.89 9.58 -15.06 -0.14 -7.03 16 16 H 0.07 1.75 7.89 -52.48 -0.41 1.33 16 17 C 0.00 0.03 4.92 -17.43 -0.09 -0.05 16 18 N -0.90 -26.13 11.19 55.49 0.62 -25.51 16 19 Si 0.90 21.58 29.59 -169.99 -5.03 16.55 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 C 0.17 4.12 5.30 -3.71 -0.02 4.10 16 24 C -0.15 -2.69 5.55 -26.61 -0.15 -2.84 16 25 C -0.13 -1.04 9.70 -39.56 -0.38 -1.43 16 26 C -0.09 -0.63 9.70 -39.61 -0.38 -1.01 16 27 C -0.11 -0.91 5.89 -104.47 -0.62 -1.53 16 28 C -0.11 -0.67 9.79 36.01 0.35 -0.32 16 29 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.28 7.65 -51.93 -0.40 -0.12 16 31 H 0.06 0.30 7.67 -51.93 -0.40 -0.10 16 32 H 0.13 0.99 6.30 -52.49 -0.33 0.66 16 33 H 0.08 0.81 8.09 -51.93 -0.42 0.39 16 34 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 35 H 0.39 3.44 8.48 -40.82 -0.35 3.10 16 36 H 0.39 4.50 8.62 -40.82 -0.35 4.15 16 37 H 0.08 1.64 7.58 -51.93 -0.39 1.25 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 42 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 43 H 0.02 0.53 8.14 -51.92 -0.42 0.11 16 44 H 0.09 2.39 6.07 -51.93 -0.31 2.07 16 45 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.13 0.88 8.06 -52.48 -0.42 0.45 16 48 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 49 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.07 0.48 7.53 -51.93 -0.39 0.08 16 51 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 LS Contribution 410.55 15.07 6.19 6.19 Total: -1.00 -33.11 410.55 -10.58 -43.69 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -8.37 Total: 4.50 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: -2.70 Total: 3.72 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: -0.56 Total: -60.41 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: -0.10 Total: -14.23 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -33.11 -10.58 -43.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609335952.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.781 kcal (2) G-P(sol) polarization free energy of solvation -33.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds