Wall clock time and date at job start Wed Apr 1 2020 05:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35902 * 117.00093 * 2 1 4 4 C 1.38753 * 120.05633 * 0.30077 * 3 2 1 5 5 C 1.38116 * 119.94759 * 180.20792 * 4 3 2 6 6 C 1.50696 * 119.97620 * 179.78324 * 5 4 3 7 7 N 1.46496 * 109.47617 * 269.72251 * 6 5 4 8 8 C 1.34779 * 120.00313 * 179.71856 * 7 6 5 9 9 O 1.21583 * 119.99696 * 0.28356 * 8 7 6 10 10 N 1.34773 * 119.99879 * 180.27343 * 8 7 6 11 11 C 1.46505 * 119.99821 * 180.02562 * 10 8 7 12 12 C 1.53046 * 109.45754 * 275.03345 * 11 10 8 13 13 C 1.53190 * 109.30700 * 178.60307 * 12 11 10 14 14 N 1.46918 * 108.77102 * 54.65309 * 13 12 11 15 15 C 1.36934 * 120.63479 * 126.40384 * 14 13 12 16 16 H 1.08007 * 119.99941 * 331.82556 * 15 14 13 17 17 C 1.38808 * 120.00518 * 151.82836 * 15 14 13 18 18 N 1.31622 * 119.99884 * 343.07434 * 17 15 14 19 19 Si 1.86801 * 120.00437 * 163.07501 * 17 15 14 20 20 H 1.48505 * 109.47262 * 90.00000 * 19 17 15 21 21 H 1.48498 * 109.47273 * 209.99910 * 19 17 15 22 22 H 1.48498 * 109.46865 * 329.99872 * 19 17 15 23 23 C 1.46930 * 118.74011 * 306.38730 * 14 13 12 24 24 C 1.53040 * 109.45855 * 154.97661 * 11 10 8 25 25 C 1.38290 * 120.05111 * 359.50782 * 5 4 3 26 26 C 1.38249 * 120.11527 * 0.23614 * 25 5 4 27 27 C 1.38162 * 120.05062 * 359.97438 * 26 25 5 28 28 C 1.50703 * 120.02338 * 180.02562 * 27 26 25 29 29 H 1.08994 * 109.47179 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47590 * 300.00503 * 1 2 3 31 31 H 1.09000 * 109.46773 * 60.00115 * 1 2 3 32 32 H 1.07998 * 120.02668 * 359.97438 * 4 3 2 33 33 H 1.09007 * 109.47086 * 149.72446 * 6 5 4 34 34 H 1.09003 * 109.47008 * 29.72994 * 6 5 4 35 35 H 0.97006 * 119.99368 * 0.02562 * 7 6 5 36 36 H 0.97000 * 120.00592 * 0.02562 * 10 8 7 37 37 H 1.08995 * 109.45886 * 35.00319 * 11 10 8 38 38 H 1.09004 * 109.49345 * 298.56122 * 12 11 10 39 39 H 1.08993 * 109.50056 * 58.66547 * 12 11 10 40 40 H 1.08997 * 109.59780 * 294.86243 * 13 12 11 41 41 H 1.08997 * 109.70281 * 174.50361 * 13 12 11 42 42 H 0.96998 * 120.00308 * 180.02562 * 18 17 15 43 43 H 1.09010 * 109.58213 * 293.81791 * 23 14 13 44 44 H 1.08998 * 109.70929 * 173.46443 * 23 14 13 45 45 H 1.08996 * 109.49929 * 301.33975 * 24 11 10 46 46 H 1.08999 * 109.49613 * 61.40112 * 24 11 10 47 47 H 1.08005 * 119.94277 * 180.25313 * 25 5 4 48 48 H 1.07998 * 119.97131 * 180.02562 * 26 25 5 49 49 H 1.09000 * 109.47177 * 89.99898 * 28 27 26 50 50 H 1.08999 * 109.46715 * 209.99492 * 28 27 26 51 51 H 1.08995 * 109.47266 * 329.99671 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 0.0063 5 6 1.9208 3.6047 0.0019 6 6 1.1020 4.8698 0.0039 7 7 0.8361 5.2817 -1.3767 8 6 0.1112 6.3912 -1.6212 9 8 -0.3178 7.0532 -0.6961 10 7 -0.1379 6.7670 -2.8913 11 6 -0.9255 7.9735 -3.1571 12 6 -2.4159 7.6276 -3.1212 13 6 -3.2367 8.8979 -3.3649 14 7 -2.7908 9.5150 -4.6215 15 6 -3.6902 9.8134 -5.6099 16 1 -4.5965 9.2341 -5.7083 17 6 -3.4373 10.8602 -6.4857 18 7 -2.5314 11.7663 -6.1841 19 14 -4.3825 10.9832 -8.0922 20 1 -5.6144 11.7853 -7.8817 21 1 -3.5329 11.6409 -9.1173 22 1 -4.7515 9.6213 -8.5549 23 6 -1.3614 9.8064 -4.7972 24 6 -0.5616 8.5260 -4.5372 25 6 3.3019 3.6757 0.0016 26 6 4.0560 2.5170 0.0007 27 6 3.4311 1.2848 0.0006 28 6 4.2538 0.0221 0.0002 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 0.2129 2.3204 0.0108 33 1 1.6519 5.6578 0.5186 34 1 0.1576 4.6905 0.5179 35 1 1.1782 4.7532 -2.1148 36 1 0.2041 6.2388 -3.6294 37 1 -0.7084 8.7236 -2.3968 38 1 -2.6383 6.8959 -3.8980 39 1 -2.6696 7.2123 -2.1460 40 1 -3.0844 9.5952 -2.5412 41 1 -4.2941 8.6438 -3.4378 42 1 -2.3549 12.4980 -6.7959 43 1 -1.0562 10.5779 -4.0902 44 1 -1.1789 10.1508 -5.8151 45 1 0.5046 8.7501 -4.5698 46 1 -0.8011 7.7855 -5.3002 47 1 3.7922 4.6381 0.0023 48 1 5.1344 2.5752 0.0008 49 1 4.4524 -0.2824 1.0278 50 1 3.7062 -0.7680 -0.5135 51 1 5.1976 0.2036 -0.5139 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609335952.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:48:21 Heat of formation + Delta-G solvation = -48.959969 kcal Electronic energy + Delta-G solvation = -29873.569234 eV Core-core repulsion = 25772.599391 eV Total energy + Delta-G solvation = -4100.969844 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.45856 -41.01476 -39.19656 -38.55978 -36.27409 -35.80515 -34.09827 -33.42244 -31.76892 -31.15859 -31.11773 -29.10007 -28.39382 -26.87664 -25.36508 -23.94487 -23.57468 -23.20916 -22.00714 -21.83214 -21.04392 -19.58366 -18.79039 -18.26962 -17.56147 -17.28025 -16.81495 -16.70107 -16.47005 -16.36505 -15.88439 -15.55999 -15.36032 -15.27518 -15.06790 -14.82761 -14.71740 -14.41584 -14.38778 -14.03633 -13.80774 -13.64321 -13.20305 -13.04065 -13.00795 -12.95710 -12.78928 -12.60470 -12.50692 -12.25888 -12.22549 -12.03658 -12.01182 -11.86228 -11.78496 -11.55582 -11.39939 -11.22004 -10.55207 -10.32917 -9.78662 -9.73966 -9.10108 -8.69806 -7.87151 -5.32674 0.15930 0.44057 1.48647 1.49776 1.59884 1.76515 2.17905 2.36652 2.52583 2.72456 3.27664 3.39548 3.52976 3.67805 3.82279 3.91665 3.99598 4.08100 4.17364 4.27739 4.29325 4.35903 4.36095 4.47362 4.57323 4.65133 4.65685 4.66520 4.73248 4.78297 4.82543 4.85054 4.87173 4.91860 5.03550 5.07729 5.17202 5.26584 5.30624 5.32260 5.43318 5.48268 5.51067 5.58404 5.61267 5.65394 5.71228 5.82150 6.03722 6.39781 6.40640 7.12377 7.15176 7.61135 7.84713 8.37926 9.20059 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021500 B = 0.001742 C = 0.001709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.037337 B =16069.775642 C =16382.574390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.328 6.328 3 C 0.109 3.891 4 C -0.189 4.189 5 C -0.076 4.076 6 C 0.185 3.815 7 N -0.728 5.728 8 C 0.701 3.299 9 O -0.635 6.635 10 N -0.726 5.726 11 C 0.182 3.818 12 C -0.123 4.123 13 C 0.144 3.856 14 N -0.608 5.608 15 C -0.263 4.263 16 H 0.067 0.933 17 C -0.050 4.050 18 N -0.935 5.935 19 Si 0.969 3.031 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.269 1.269 23 C 0.178 3.822 24 C -0.127 4.127 25 C -0.135 4.135 26 C -0.085 4.085 27 C -0.122 4.122 28 C -0.104 4.104 29 H 0.119 0.881 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.135 0.865 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.409 0.591 36 H 0.409 0.591 37 H 0.056 0.944 38 H 0.065 0.935 39 H 0.057 0.943 40 H 0.007 0.993 41 H 0.057 0.943 42 H 0.251 0.749 43 H -0.006 1.006 44 H 0.064 0.936 45 H 0.076 0.924 46 H 0.070 0.930 47 H 0.137 0.863 48 H 0.153 0.847 49 H 0.073 0.927 50 H 0.063 0.937 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.601 -26.398 11.674 32.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.242 6.242 3 C 0.064 3.936 4 C -0.208 4.208 5 C -0.077 4.077 6 C 0.061 3.939 7 N -0.385 5.385 8 C 0.401 3.599 9 O -0.517 6.517 10 N -0.381 5.381 11 C 0.076 3.924 12 C -0.163 4.163 13 C 0.018 3.982 14 N -0.332 5.332 15 C -0.393 4.393 16 H 0.085 0.915 17 C -0.246 4.246 18 N -0.581 5.581 19 Si 0.797 3.203 20 H -0.214 1.214 21 H -0.218 1.218 22 H -0.194 1.194 23 C 0.052 3.948 24 C -0.167 4.167 25 C -0.153 4.153 26 C -0.103 4.103 27 C -0.123 4.123 28 C -0.161 4.161 29 H 0.137 0.863 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.153 0.847 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.245 0.755 36 H 0.245 0.755 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.025 0.975 41 H 0.076 0.924 42 H 0.060 0.940 43 H 0.013 0.987 44 H 0.082 0.918 45 H 0.095 0.905 46 H 0.089 0.911 47 H 0.155 0.845 48 H 0.171 0.829 49 H 0.092 0.908 50 H 0.082 0.918 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 14.320 -25.864 12.435 32.072 hybrid contribution -0.705 0.427 -1.256 1.502 sum 13.616 -25.437 11.179 30.942 Atomic orbital electron populations 1.23286 0.76898 1.05436 1.01892 1.86039 1.22854 1.26626 1.88714 1.19008 0.92316 0.84426 0.97893 1.21239 1.00572 0.91601 1.07388 1.19523 0.94120 0.93030 1.00998 1.19940 0.98519 0.93155 0.82264 1.44985 1.57479 1.26835 1.09183 1.16118 0.79048 0.81333 0.83414 1.90903 1.58986 1.57169 1.44615 1.45134 1.57680 1.29333 1.05917 1.20489 0.89923 0.85243 0.96734 1.22180 0.95210 0.98301 1.00652 1.20965 0.97133 0.92586 0.87494 1.44341 1.03258 1.71546 1.14056 1.19508 1.02878 1.09794 1.07150 0.91514 1.25825 1.00459 0.94831 1.03460 1.70184 1.37819 1.13309 1.36825 0.85260 0.77643 0.77839 0.79572 1.21374 1.21765 1.19378 1.20570 0.82402 0.92007 0.99825 1.22253 1.00118 0.99103 0.95227 1.21204 0.92727 0.99571 1.01843 1.21164 1.01119 0.90275 0.97746 1.19678 0.90753 0.97391 1.04464 1.20643 0.99083 0.93557 1.02786 0.86315 0.92161 0.92256 0.84722 0.91131 0.91712 0.75482 0.75480 0.92620 0.91594 0.92391 0.97542 0.92419 0.94015 0.98746 0.91788 0.90520 0.91123 0.84515 0.82891 0.90828 0.91834 0.90034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.33 -5.19 9.54 -92.44 -0.88 -6.07 16 3 C 0.11 1.79 6.66 22.51 0.15 1.94 16 4 C -0.19 -2.99 8.69 22.36 0.19 -2.80 16 5 C -0.08 -1.21 5.25 -19.88 -0.10 -1.31 16 6 C 0.18 3.54 5.80 85.63 0.50 4.04 16 7 N -0.73 -14.64 5.55 -482.31 -2.68 -17.31 16 8 C 0.70 20.17 8.53 179.05 1.53 21.70 16 9 O -0.64 -24.43 16.01 -3.98 -0.06 -24.50 16 10 N -0.73 -19.33 5.08 -457.68 -2.33 -21.65 16 11 C 0.18 6.26 2.42 45.02 0.11 6.37 16 12 C -0.12 -4.48 5.65 30.67 0.17 -4.30 16 13 C 0.14 6.35 6.52 86.36 0.56 6.91 16 14 N -0.61 -30.93 2.99 -699.11 -2.09 -33.02 16 15 C -0.26 -14.50 9.58 84.03 0.81 -13.70 16 16 H 0.07 3.58 7.89 -2.91 -0.02 3.56 16 17 C -0.05 -2.81 4.92 84.86 0.42 -2.39 16 18 N -0.94 -55.28 11.19 21.65 0.24 -55.04 16 19 Si 0.97 44.54 29.59 68.60 2.03 46.57 16 20 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 21 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 22 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 23 C 0.18 8.56 5.30 86.36 0.46 9.02 16 24 C -0.13 -4.54 5.55 30.67 0.17 -4.37 16 25 C -0.13 -1.87 9.70 22.28 0.22 -1.65 16 26 C -0.09 -1.06 9.70 22.25 0.22 -0.84 16 27 C -0.12 -1.77 5.89 -19.77 -0.12 -1.89 16 28 C -0.10 -1.13 9.79 71.24 0.70 -0.43 16 29 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.06 0.54 7.65 -2.39 -0.02 0.52 16 31 H 0.06 0.54 7.67 -2.39 -0.02 0.53 16 32 H 0.14 1.91 6.30 -2.91 -0.02 1.89 16 33 H 0.07 1.45 8.09 -2.38 -0.02 1.43 16 34 H 0.06 1.36 8.08 -2.39 -0.02 1.34 16 35 H 0.41 6.06 8.48 -92.70 -0.79 5.28 16 36 H 0.41 8.11 8.62 -92.71 -0.80 7.31 16 37 H 0.06 2.25 7.58 -2.39 -0.02 2.24 16 38 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 41 H 0.06 2.46 7.93 -2.39 -0.02 2.44 16 42 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 43 H -0.01 -0.29 8.14 -2.38 -0.02 -0.31 16 44 H 0.06 3.42 6.07 -2.39 -0.01 3.41 16 45 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 46 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 47 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 48 H 0.15 1.13 8.06 -2.91 -0.02 1.11 16 49 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 50 H 0.06 0.78 7.53 -2.39 -0.02 0.76 16 51 H 0.08 0.61 8.09 -2.39 -0.02 0.59 16 Total: -1.00 -72.29 410.55 0.67 -71.61 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: -0.64 Total: 21.82 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: 7.08 Total: 17.59 kcal Atomic # 7 Polarization: -120.17 SS G_CDS: -6.85 Total: -127.03 kcal Atomic # 8 Polarization: -29.62 SS G_CDS: -0.95 Total: -30.57 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -72.29 0.67 -71.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609335952.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.655 kcal (2) G-P(sol) polarization free energy of solvation -72.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds