Wall clock time and date at job start Wed Apr 1 2020 05:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38168 * 120.02875 * 2 1 4 4 C 1.38244 * 120.05814 * 180.29696 * 3 2 1 5 5 C 1.38295 * 120.10885 * 359.68167 * 4 3 2 6 6 C 1.38124 * 120.05234 * 359.97438 * 5 4 3 7 7 C 1.38710 * 120.03046 * 179.68109 * 2 1 3 8 8 O 1.35906 * 120.05173 * 359.97438 * 7 2 1 9 9 C 1.42897 * 116.99534 * 179.72959 * 8 7 2 10 10 C 1.53009 * 109.46657 * 179.97438 * 9 8 7 11 11 N 1.46496 * 109.46938 * 64.99912 * 10 9 8 12 12 C 1.34776 * 119.99951 * 179.97438 * 11 10 9 13 13 O 1.21591 * 119.99917 * 359.97438 * 12 11 10 14 14 N 1.34780 * 120.00095 * 180.02562 * 12 11 10 15 15 C 1.46502 * 120.00046 * 180.02562 * 14 12 11 16 16 C 1.53039 * 109.45924 * 275.02483 * 15 14 12 17 17 C 1.53194 * 109.30890 * 178.59997 * 16 15 14 18 18 N 1.46925 * 108.76773 * 54.65714 * 17 16 15 19 19 C 1.36933 * 120.63397 * 126.39952 * 18 17 16 20 20 H 1.08000 * 120.00144 * 331.82878 * 19 18 17 21 21 C 1.38815 * 120.00096 * 151.82031 * 19 18 17 22 22 N 1.31622 * 119.99758 * 343.09137 * 21 19 18 23 23 Si 1.86796 * 120.00042 * 163.08202 * 21 19 18 24 24 H 1.48502 * 109.47086 * 60.00391 * 23 21 19 25 25 H 1.48496 * 109.47056 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47110 * 300.00621 * 23 21 19 27 27 C 1.46935 * 118.73792 * 306.38252 * 18 17 16 28 28 C 1.53037 * 109.45856 * 154.96465 * 15 14 12 29 29 H 1.08999 * 109.47138 * 270.32122 * 1 2 3 30 30 H 1.09001 * 109.47344 * 30.31796 * 1 2 3 31 31 H 1.08998 * 109.47446 * 150.31849 * 1 2 3 32 32 H 1.08003 * 119.97520 * 0.02562 * 3 2 1 33 33 H 1.07994 * 119.94923 * 179.70296 * 4 3 2 34 34 H 1.07999 * 119.97377 * 180.02562 * 5 4 3 35 35 H 1.08005 * 120.02466 * 180.02562 * 6 5 4 36 36 H 1.08998 * 109.47250 * 299.99300 * 9 8 7 37 37 H 1.09003 * 109.47751 * 59.99865 * 9 8 7 38 38 H 1.09007 * 109.46626 * 184.99376 * 10 9 8 39 39 H 1.08998 * 109.47329 * 304.99621 * 10 9 8 40 40 H 0.97004 * 120.00259 * 0.02562 * 11 10 9 41 41 H 0.96998 * 119.99834 * 359.97438 * 14 12 11 42 42 H 1.09007 * 109.45533 * 34.99672 * 15 14 12 43 43 H 1.08998 * 109.49783 * 298.56304 * 16 15 14 44 44 H 1.09001 * 109.49587 * 58.66555 * 16 15 14 45 45 H 1.09004 * 109.60088 * 294.86867 * 17 16 15 46 46 H 1.09000 * 109.69799 * 174.50676 * 17 16 15 47 47 H 0.97003 * 119.99707 * 180.02562 * 22 21 19 48 48 H 1.08997 * 109.58438 * 293.82445 * 27 18 17 49 49 H 1.08989 * 109.70255 * 173.46642 * 27 18 17 50 50 H 1.08993 * 109.50281 * 301.33940 * 28 15 14 51 51 H 1.09005 * 109.49403 * 61.44305 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5808 1.1969 -0.0062 5 6 4.2752 0.0009 -0.0058 6 6 3.5886 -1.1975 0.0014 7 6 2.2012 -1.2009 0.0067 8 8 1.5233 -2.3788 0.0138 9 6 2.3034 -3.5761 0.0144 10 6 1.3731 -4.7908 0.0234 11 7 0.6067 -4.8281 -1.2246 12 6 -0.2823 -5.8179 -1.4401 13 8 -0.4479 -6.6801 -0.5989 14 7 -0.9871 -5.8526 -2.5884 15 6 -1.9538 -6.9282 -2.8224 16 6 -1.2307 -8.1469 -3.4002 17 6 -2.2385 -9.2812 -3.6108 18 7 -3.3424 -8.7842 -4.4433 19 6 -3.7072 -9.4452 -5.5857 20 1 -2.9760 -10.0215 -6.1330 21 6 -5.0169 -9.3747 -6.0402 22 7 -5.9732 -8.9693 -5.2318 23 14 -5.4221 -9.8549 -7.7994 24 1 -5.0395 -11.2717 -8.0264 25 1 -6.8794 -9.6917 -8.0338 26 1 -4.6696 -8.9827 -8.7365 27 6 -4.0479 -7.5645 -4.0265 28 6 -3.0197 -6.4495 -3.8108 29 1 -0.3633 0.0058 1.0276 30 1 -0.3634 0.8871 -0.5188 31 1 -0.3634 -0.8928 -0.5089 32 1 1.6585 2.1316 0.0004 33 1 4.1195 2.1329 -0.0110 34 1 5.3552 0.0041 -0.0102 35 1 4.1314 -2.1313 0.0021 36 1 2.9282 -3.6031 -0.8783 37 1 2.9363 -3.5970 0.9016 38 1 1.9655 -5.7014 0.1133 39 1 0.6883 -4.7178 0.8683 40 1 0.7396 -4.1409 -1.8961 41 1 -0.8547 -5.1649 -3.2596 42 1 -2.4288 -7.2008 -1.8799 43 1 -0.7764 -7.8816 -4.3548 44 1 -0.4560 -8.4730 -2.7062 45 1 -2.6270 -9.6089 -2.6465 46 1 -1.7510 -10.1176 -4.1117 47 1 -6.8885 -8.9204 -5.5493 48 1 -4.5837 -7.7522 -3.0961 49 1 -4.7540 -7.2656 -4.8010 50 1 -3.5184 -5.5675 -3.4093 51 1 -2.5484 -6.2005 -4.7616 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609337221.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:48:30 Heat of formation + Delta-G solvation = -27.798511 kcal Electronic energy + Delta-G solvation = -29809.505701 eV Core-core repulsion = 25709.453487 eV Total energy + Delta-G solvation = -4100.052214 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.69757 -39.88267 -38.06159 -37.39310 -34.92733 -34.27707 -33.17495 -32.13124 -30.74322 -30.13111 -29.69851 -28.81999 -27.07459 -25.06870 -24.01409 -22.34618 -22.13239 -21.89801 -21.52016 -20.60548 -19.41325 -18.54916 -18.14212 -16.93761 -16.61887 -16.34937 -16.08346 -15.73723 -15.28428 -14.85092 -14.79055 -14.47450 -14.24708 -13.95381 -13.68550 -13.56460 -13.51600 -13.46459 -13.15520 -12.92047 -12.61850 -12.51553 -12.41424 -12.28711 -12.10813 -11.69693 -11.43941 -11.41041 -11.17655 -11.08393 -10.81794 -10.69617 -10.46723 -10.24727 -10.02377 -9.99586 -9.72221 -9.51111 -9.23521 -9.18297 -8.56778 -8.50858 -8.40664 -6.65559 -5.77258 -3.19311 0.91347 1.04502 2.69245 2.82382 3.35444 3.39694 3.40353 3.45315 3.46458 4.26490 4.33647 4.37129 4.50935 4.51414 4.61700 4.67834 4.76122 4.90427 4.95541 5.14592 5.30056 5.36109 5.37939 5.40541 5.44336 5.48946 5.52531 5.55620 5.65582 5.88208 5.93383 5.94059 6.05999 6.12179 6.14525 6.32888 6.36324 6.40042 6.41557 6.53677 6.61232 6.65316 6.83861 6.93311 6.99862 7.02703 7.14178 7.35287 7.65016 7.81125 8.17222 8.47094 8.78140 9.23166 9.86498 10.43894 11.31663 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020775 B = 0.001714 C = 0.001651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.479649 B =16335.876390 C =16957.424447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.115 4.115 3 C -0.085 4.085 4 C -0.156 4.156 5 C -0.087 4.087 6 C -0.206 4.206 7 C 0.129 3.871 8 O -0.307 6.307 9 C 0.047 3.953 10 C 0.144 3.856 11 N -0.750 5.750 12 C 0.702 3.298 13 O -0.592 6.592 14 N -0.739 5.739 15 C 0.169 3.831 16 C -0.139 4.139 17 C 0.147 3.853 18 N -0.592 5.592 19 C -0.252 4.252 20 H 0.065 0.935 21 C 0.002 3.998 22 N -0.903 5.903 23 Si 0.903 3.097 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.284 1.284 27 C 0.175 3.825 28 C -0.146 4.146 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.128 0.872 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.128 0.872 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.396 0.604 41 H 0.391 0.609 42 H 0.081 0.919 43 H 0.056 0.944 44 H 0.054 0.946 45 H 0.020 0.980 46 H 0.055 0.945 47 H 0.254 0.746 48 H 0.021 0.979 49 H 0.091 0.909 50 H 0.054 0.946 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.086 20.840 10.968 30.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.116 4.116 3 C -0.103 4.103 4 C -0.174 4.174 5 C -0.106 4.106 6 C -0.225 4.225 7 C 0.083 3.917 8 O -0.221 6.221 9 C -0.029 4.029 10 C 0.020 3.980 11 N -0.407 5.407 12 C 0.402 3.598 13 O -0.470 6.470 14 N -0.392 5.392 15 C 0.065 3.935 16 C -0.179 4.179 17 C 0.020 3.980 18 N -0.315 5.315 19 C -0.382 4.382 20 H 0.083 0.917 21 C -0.197 4.197 22 N -0.548 5.548 23 Si 0.733 3.267 24 H -0.209 1.209 25 H -0.217 1.217 26 H -0.211 1.211 27 C 0.048 3.952 28 C -0.186 4.186 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.146 0.854 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.145 0.855 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.095 0.905 40 H 0.230 0.770 41 H 0.224 0.776 42 H 0.099 0.901 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.038 0.962 46 H 0.074 0.926 47 H 0.064 0.936 48 H 0.039 0.961 49 H 0.109 0.891 50 H 0.072 0.928 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 19.511 19.961 11.727 30.276 hybrid contribution 0.295 0.434 -1.499 1.589 sum 19.806 20.394 10.227 30.213 Atomic orbital electron populations 1.20631 0.90303 1.03000 1.02448 1.19337 0.96714 0.90350 1.05192 1.20923 0.94156 0.96863 0.98340 1.21057 0.94249 0.98127 1.03962 1.20937 0.99801 0.91906 0.97915 1.21259 0.92944 0.99543 1.08759 1.18832 0.90348 0.85669 0.96804 1.86136 1.35475 1.12019 1.88449 1.23156 0.94366 0.82794 1.02544 1.21167 0.94140 0.95260 0.87471 1.45045 1.44329 1.29998 1.21365 1.15992 0.79116 0.81827 0.82837 1.90924 1.70130 1.40165 1.45786 1.45539 1.43864 1.31190 1.18577 1.20909 0.87797 0.85511 0.99271 1.22389 0.98902 0.96877 0.99775 1.20880 0.89061 0.93665 0.94352 1.44083 1.36555 1.25588 1.25295 1.19149 0.92553 1.27290 0.99180 0.91722 1.25056 0.95446 1.00802 0.98389 1.70020 0.99724 1.51425 1.33610 0.86363 0.76930 0.78462 0.84961 1.20894 1.21661 1.21095 1.20740 0.91528 0.83490 0.99441 1.22544 0.97909 1.00444 0.97724 0.91328 0.91665 0.90915 0.85427 0.85960 0.85889 0.85460 0.91204 0.90244 0.89438 0.90482 0.77016 0.77630 0.90086 0.92501 0.92733 0.96164 0.92627 0.93567 0.96084 0.89057 0.92768 0.92265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 9.79 36.00 0.35 -0.47 16 2 C -0.12 -0.98 5.89 -104.47 -0.62 -1.60 16 3 C -0.08 -0.61 9.70 -39.60 -0.38 -1.00 16 4 C -0.16 -1.04 10.04 -39.56 -0.40 -1.44 16 5 C -0.09 -0.59 10.04 -39.60 -0.40 -0.99 16 6 C -0.21 -1.53 9.04 -39.44 -0.36 -1.88 16 7 C 0.13 1.13 6.66 -39.22 -0.26 0.87 16 8 O -0.31 -2.72 9.13 -19.44 -0.18 -2.90 16 9 C 0.05 0.31 4.87 37.16 0.18 0.49 16 10 C 0.14 1.30 6.06 -4.04 -0.02 1.28 16 11 N -0.75 -8.05 5.51 -65.22 -0.36 -8.41 16 12 C 0.70 10.62 8.53 -86.92 -0.74 9.88 16 13 O -0.59 -11.47 16.01 5.29 0.08 -11.38 16 14 N -0.74 -10.68 5.08 -58.63 -0.30 -10.97 16 15 C 0.17 3.02 2.42 -67.89 -0.16 2.85 16 16 C -0.14 -2.60 5.65 -26.61 -0.15 -2.75 16 17 C 0.15 3.23 6.52 -3.71 -0.02 3.20 16 18 N -0.59 -14.93 2.99 -172.31 -0.52 -15.45 16 19 C -0.25 -6.93 9.58 -15.06 -0.14 -7.07 16 20 H 0.07 1.74 7.88 -52.49 -0.41 1.33 16 21 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 22 N -0.90 -26.19 11.19 55.49 0.62 -25.56 16 23 Si 0.90 21.64 29.59 -169.99 -5.03 16.61 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 27 C 0.17 4.14 5.30 -3.70 -0.02 4.12 16 28 C -0.15 -2.72 5.55 -26.61 -0.15 -2.86 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 31 H 0.07 0.63 7.53 -51.93 -0.39 0.24 16 32 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 33 H 0.12 0.57 8.06 -52.49 -0.42 0.14 16 34 H 0.12 0.57 8.06 -52.49 -0.42 0.14 16 35 H 0.13 0.71 6.30 -52.48 -0.33 0.38 16 36 H 0.07 0.38 7.66 -51.93 -0.40 -0.02 16 37 H 0.08 0.40 7.66 -51.93 -0.40 0.00 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.40 3.40 8.49 -40.82 -0.35 3.05 16 41 H 0.39 4.55 8.62 -40.82 -0.35 4.20 16 42 H 0.08 1.65 7.58 -51.93 -0.39 1.25 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.06 1.19 7.93 -51.93 -0.41 0.77 16 47 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 48 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.09 2.40 6.06 -51.94 -0.31 2.08 16 50 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 51 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 410.94 15.07 6.19 6.19 Total: -1.00 -33.36 410.94 -11.24 -44.60 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -8.38 Total: 4.68 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: -3.38 Total: 2.59 kcal Atomic # 7 Polarization: -59.84 SS G_CDS: -0.55 Total: -60.39 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.09 Total: -14.28 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -33.36 -11.24 -44.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609337221.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.799 kcal (2) G-P(sol) polarization free energy of solvation -33.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds