Wall clock time and date at job start Wed Apr 1 2020 05:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38168 * 120.02875 * 2 1 4 4 C 1.38244 * 120.05814 * 180.29696 * 3 2 1 5 5 C 1.38295 * 120.10885 * 359.68167 * 4 3 2 6 6 C 1.38124 * 120.05234 * 359.97438 * 5 4 3 7 7 C 1.38710 * 120.03046 * 179.68109 * 2 1 3 8 8 O 1.35906 * 120.05173 * 359.97438 * 7 2 1 9 9 C 1.42897 * 116.99534 * 179.72959 * 8 7 2 10 10 C 1.53009 * 109.46657 * 179.97438 * 9 8 7 11 11 N 1.46496 * 109.46938 * 64.99912 * 10 9 8 12 12 C 1.34776 * 119.99951 * 179.97438 * 11 10 9 13 13 O 1.21591 * 119.99917 * 359.97438 * 12 11 10 14 14 N 1.34780 * 120.00095 * 180.02562 * 12 11 10 15 15 C 1.46502 * 120.00046 * 180.02562 * 14 12 11 16 16 C 1.53039 * 109.45924 * 275.02483 * 15 14 12 17 17 C 1.53194 * 109.30890 * 178.59997 * 16 15 14 18 18 N 1.46925 * 108.76773 * 54.65714 * 17 16 15 19 19 C 1.36933 * 120.63397 * 126.39952 * 18 17 16 20 20 H 1.08000 * 120.00144 * 331.82878 * 19 18 17 21 21 C 1.38815 * 120.00096 * 151.82031 * 19 18 17 22 22 N 1.31622 * 119.99758 * 343.09137 * 21 19 18 23 23 Si 1.86796 * 120.00042 * 163.08202 * 21 19 18 24 24 H 1.48502 * 109.47086 * 60.00391 * 23 21 19 25 25 H 1.48496 * 109.47056 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47110 * 300.00621 * 23 21 19 27 27 C 1.46935 * 118.73792 * 306.38252 * 18 17 16 28 28 C 1.53037 * 109.45856 * 154.96465 * 15 14 12 29 29 H 1.08999 * 109.47138 * 270.32122 * 1 2 3 30 30 H 1.09001 * 109.47344 * 30.31796 * 1 2 3 31 31 H 1.08998 * 109.47446 * 150.31849 * 1 2 3 32 32 H 1.08003 * 119.97520 * 0.02562 * 3 2 1 33 33 H 1.07994 * 119.94923 * 179.70296 * 4 3 2 34 34 H 1.07999 * 119.97377 * 180.02562 * 5 4 3 35 35 H 1.08005 * 120.02466 * 180.02562 * 6 5 4 36 36 H 1.08998 * 109.47250 * 299.99300 * 9 8 7 37 37 H 1.09003 * 109.47751 * 59.99865 * 9 8 7 38 38 H 1.09007 * 109.46626 * 184.99376 * 10 9 8 39 39 H 1.08998 * 109.47329 * 304.99621 * 10 9 8 40 40 H 0.97004 * 120.00259 * 0.02562 * 11 10 9 41 41 H 0.96998 * 119.99834 * 359.97438 * 14 12 11 42 42 H 1.09007 * 109.45533 * 34.99672 * 15 14 12 43 43 H 1.08998 * 109.49783 * 298.56304 * 16 15 14 44 44 H 1.09001 * 109.49587 * 58.66555 * 16 15 14 45 45 H 1.09004 * 109.60088 * 294.86867 * 17 16 15 46 46 H 1.09000 * 109.69799 * 174.50676 * 17 16 15 47 47 H 0.97003 * 119.99707 * 180.02562 * 22 21 19 48 48 H 1.08997 * 109.58438 * 293.82445 * 27 18 17 49 49 H 1.08989 * 109.70255 * 173.46642 * 27 18 17 50 50 H 1.08993 * 109.50281 * 301.33940 * 28 15 14 51 51 H 1.09005 * 109.49403 * 61.44305 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5808 1.1969 -0.0062 5 6 4.2752 0.0009 -0.0058 6 6 3.5886 -1.1975 0.0014 7 6 2.2012 -1.2009 0.0067 8 8 1.5233 -2.3788 0.0138 9 6 2.3034 -3.5761 0.0144 10 6 1.3731 -4.7908 0.0234 11 7 0.6067 -4.8281 -1.2246 12 6 -0.2823 -5.8179 -1.4401 13 8 -0.4479 -6.6801 -0.5989 14 7 -0.9871 -5.8526 -2.5884 15 6 -1.9538 -6.9282 -2.8224 16 6 -1.2307 -8.1469 -3.4002 17 6 -2.2385 -9.2812 -3.6108 18 7 -3.3424 -8.7842 -4.4433 19 6 -3.7072 -9.4452 -5.5857 20 1 -2.9760 -10.0215 -6.1330 21 6 -5.0169 -9.3747 -6.0402 22 7 -5.9732 -8.9693 -5.2318 23 14 -5.4221 -9.8549 -7.7994 24 1 -5.0395 -11.2717 -8.0264 25 1 -6.8794 -9.6917 -8.0338 26 1 -4.6696 -8.9827 -8.7365 27 6 -4.0479 -7.5645 -4.0265 28 6 -3.0197 -6.4495 -3.8108 29 1 -0.3633 0.0058 1.0276 30 1 -0.3634 0.8871 -0.5188 31 1 -0.3634 -0.8928 -0.5089 32 1 1.6585 2.1316 0.0004 33 1 4.1195 2.1329 -0.0110 34 1 5.3552 0.0041 -0.0102 35 1 4.1314 -2.1313 0.0021 36 1 2.9282 -3.6031 -0.8783 37 1 2.9363 -3.5970 0.9016 38 1 1.9655 -5.7014 0.1133 39 1 0.6883 -4.7178 0.8683 40 1 0.7396 -4.1409 -1.8961 41 1 -0.8547 -5.1649 -3.2596 42 1 -2.4288 -7.2008 -1.8799 43 1 -0.7764 -7.8816 -4.3548 44 1 -0.4560 -8.4730 -2.7062 45 1 -2.6270 -9.6089 -2.6465 46 1 -1.7510 -10.1176 -4.1117 47 1 -6.8885 -8.9204 -5.5493 48 1 -4.5837 -7.7522 -3.0961 49 1 -4.7540 -7.2656 -4.8010 50 1 -3.5184 -5.5675 -3.4093 51 1 -2.5484 -6.2005 -4.7616 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609337221.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:48:29 Heat of formation + Delta-G solvation = -48.902822 kcal Electronic energy + Delta-G solvation = -29810.420853 eV Core-core repulsion = 25709.453487 eV Total energy + Delta-G solvation = -4100.967365 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.36587 -40.99192 -39.17118 -38.47866 -36.14244 -35.67926 -33.93654 -33.67350 -31.94692 -31.47295 -30.89529 -29.91203 -27.62072 -26.87026 -24.86668 -23.93526 -23.58580 -22.61296 -22.16921 -21.84995 -21.04748 -19.44739 -19.07989 -18.61048 -17.70175 -17.00160 -16.90582 -16.62217 -16.57772 -16.28444 -15.79798 -15.45907 -15.36309 -15.29246 -15.18728 -14.79857 -14.58597 -14.38429 -14.19027 -14.02364 -13.99009 -13.71618 -13.19803 -13.15614 -13.00634 -12.94375 -12.72779 -12.56580 -12.53472 -12.23264 -12.19833 -12.02695 -11.94847 -11.85948 -11.68520 -11.55859 -11.38561 -11.19735 -10.54299 -10.31920 -9.74672 -9.73148 -9.05077 -8.69881 -7.86775 -5.32544 0.40174 0.51944 1.49404 1.51181 1.58478 1.70672 2.14921 2.22315 2.52938 2.83979 3.25599 3.33708 3.67768 3.69215 3.87739 3.91521 4.00239 4.07438 4.08413 4.23886 4.27875 4.35838 4.41213 4.43694 4.47435 4.59736 4.66551 4.72911 4.79039 4.80428 4.81475 4.82986 4.87729 5.00568 5.03787 5.08083 5.17157 5.30831 5.32817 5.42828 5.45508 5.48543 5.55366 5.61614 5.64010 5.65330 5.70880 5.90736 6.02963 6.39845 6.46495 7.12416 7.15243 7.61882 7.84833 8.38215 9.20260 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020775 B = 0.001714 C = 0.001651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.479649 B =16335.876390 C =16957.424447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.138 4.138 3 C -0.092 4.092 4 C -0.161 4.161 5 C -0.094 4.094 6 C -0.212 4.212 7 C 0.111 3.889 8 O -0.324 6.324 9 C 0.053 3.947 10 C 0.143 3.857 11 N -0.731 5.731 12 C 0.700 3.300 13 O -0.637 6.637 14 N -0.727 5.727 15 C 0.181 3.819 16 C -0.123 4.123 17 C 0.144 3.856 18 N -0.608 5.608 19 C -0.265 4.265 20 H 0.068 0.932 21 C -0.050 4.050 22 N -0.936 5.936 23 Si 0.970 3.030 24 H -0.277 1.277 25 H -0.295 1.295 26 H -0.275 1.275 27 C 0.179 3.821 28 C -0.128 4.128 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.143 0.857 33 H 0.142 0.858 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.060 0.940 40 H 0.410 0.590 41 H 0.409 0.591 42 H 0.054 0.946 43 H 0.066 0.934 44 H 0.059 0.941 45 H 0.006 0.994 46 H 0.058 0.942 47 H 0.251 0.749 48 H -0.006 1.006 49 H 0.064 0.936 50 H 0.075 0.925 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.663 22.572 10.182 33.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.138 4.138 3 C -0.110 4.110 4 C -0.179 4.179 5 C -0.112 4.112 6 C -0.231 4.231 7 C 0.066 3.934 8 O -0.239 6.239 9 C -0.022 4.022 10 C 0.018 3.982 11 N -0.389 5.389 12 C 0.400 3.600 13 O -0.518 6.518 14 N -0.381 5.381 15 C 0.076 3.924 16 C -0.163 4.163 17 C 0.018 3.982 18 N -0.332 5.332 19 C -0.395 4.395 20 H 0.085 0.915 21 C -0.246 4.246 22 N -0.582 5.582 23 Si 0.798 3.202 24 H -0.203 1.203 25 H -0.221 1.221 26 H -0.201 1.201 27 C 0.052 3.948 28 C -0.167 4.167 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.161 0.839 33 H 0.160 0.840 34 H 0.162 0.838 35 H 0.162 0.838 36 H 0.106 0.894 37 H 0.117 0.883 38 H 0.111 0.889 39 H 0.078 0.922 40 H 0.246 0.754 41 H 0.245 0.755 42 H 0.073 0.927 43 H 0.084 0.916 44 H 0.077 0.923 45 H 0.024 0.976 46 H 0.076 0.924 47 H 0.060 0.940 48 H 0.012 0.988 49 H 0.082 0.918 50 H 0.093 0.907 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 22.150 21.752 10.930 32.912 hybrid contribution -0.457 -0.090 -1.168 1.258 sum 21.692 21.662 9.761 32.173 Atomic orbital electron populations 1.20592 0.90360 1.02849 1.02273 1.19572 0.97044 0.91042 1.06189 1.21182 0.94739 0.97097 0.98015 1.21384 0.94210 0.99160 1.03187 1.21284 1.01033 0.91697 0.97150 1.21509 0.92514 1.00686 1.08388 1.19026 0.91075 0.85566 0.97767 1.86096 1.36401 1.12593 1.88782 1.23174 0.93607 0.81071 1.04349 1.21281 0.94012 0.96932 0.85932 1.44917 1.42904 1.28854 1.22188 1.16133 0.79499 0.82118 0.82265 1.90901 1.71561 1.42159 1.47190 1.45135 1.43100 1.30777 1.19137 1.20483 0.88100 0.86239 0.97586 1.22176 0.97861 0.95923 1.00324 1.20973 0.88920 0.95138 0.93162 1.44333 1.37213 1.26247 1.25376 1.19491 0.92799 1.27212 0.99963 0.91462 1.25835 0.95305 1.01323 1.02093 1.70185 0.99788 1.52881 1.35296 0.85307 0.76260 0.78341 0.80308 1.20287 1.22088 1.20135 1.20563 0.92405 0.84790 0.97018 1.22255 0.96848 0.98995 0.98634 0.91559 0.90511 0.92287 0.83919 0.83988 0.83768 0.83766 0.89437 0.88278 0.88884 0.92172 0.75410 0.75538 0.92749 0.91550 0.92278 0.97565 0.92352 0.94019 0.98795 0.91798 0.90682 0.91112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.57 9.79 71.24 0.70 -0.87 16 2 C -0.14 -2.23 5.89 -19.77 -0.12 -2.34 16 3 C -0.09 -1.20 9.70 22.25 0.22 -0.98 16 4 C -0.16 -1.80 10.04 22.28 0.22 -1.58 16 5 C -0.09 -1.03 10.04 22.26 0.22 -0.81 16 6 C -0.21 -2.67 9.04 22.36 0.20 -2.47 16 7 C 0.11 1.79 6.66 22.50 0.15 1.94 16 8 O -0.32 -5.32 9.13 -92.49 -0.84 -6.17 16 9 C 0.05 0.58 4.87 71.99 0.35 0.94 16 10 C 0.14 2.38 6.06 86.38 0.52 2.90 16 11 N -0.73 -14.45 5.51 -478.51 -2.64 -17.09 16 12 C 0.70 20.34 8.53 179.05 1.53 21.87 16 13 O -0.64 -24.56 16.01 -4.00 -0.06 -24.62 16 14 N -0.73 -19.75 5.08 -457.67 -2.33 -22.08 16 15 C 0.18 6.35 2.42 45.02 0.11 6.46 16 16 C -0.12 -4.47 5.65 30.67 0.17 -4.30 16 17 C 0.14 6.37 6.52 86.36 0.56 6.93 16 18 N -0.61 -31.08 2.99 -699.08 -2.09 -33.17 16 19 C -0.26 -14.63 9.58 84.03 0.81 -13.82 16 20 H 0.07 3.61 7.88 -2.91 -0.02 3.59 16 21 C -0.05 -2.80 4.92 84.86 0.42 -2.39 16 22 N -0.94 -55.55 11.19 21.65 0.24 -55.31 16 23 Si 0.97 44.69 29.59 68.60 2.03 46.72 16 24 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 25 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 26 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 27 C 0.18 8.66 5.30 86.36 0.46 9.11 16 28 C -0.13 -4.63 5.55 30.67 0.17 -4.46 16 29 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.08 0.91 8.09 -2.39 -0.02 0.89 16 31 H 0.06 1.02 7.53 -2.39 -0.02 1.01 16 32 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 33 H 0.14 0.93 8.06 -2.91 -0.02 0.91 16 34 H 0.14 0.89 8.06 -2.91 -0.02 0.86 16 35 H 0.14 1.18 6.30 -2.91 -0.02 1.16 16 36 H 0.09 0.68 7.66 -2.39 -0.02 0.66 16 37 H 0.10 0.74 7.66 -2.39 -0.02 0.72 16 38 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 39 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.41 6.04 8.49 -92.71 -0.79 5.25 16 41 H 0.41 8.38 8.62 -92.71 -0.80 7.58 16 42 H 0.05 2.24 7.58 -2.38 -0.02 2.22 16 43 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 44 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 45 H 0.01 0.30 8.14 -2.38 -0.02 0.28 16 46 H 0.06 2.49 7.93 -2.39 -0.02 2.47 16 47 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 48 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 49 H 0.06 3.44 6.06 -2.39 -0.01 3.43 16 50 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 51 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 Total: -1.00 -73.62 410.94 0.36 -73.27 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: -0.65 Total: 22.31 kcal Atomic # 6 Polarization: 9.44 SS G_CDS: 6.69 Total: 16.13 kcal Atomic # 7 Polarization: -120.83 SS G_CDS: -6.81 Total: -127.64 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: -0.91 Total: -30.79 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -73.62 0.36 -73.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609337221.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.365 kcal (2) G-P(sol) polarization free energy of solvation -73.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds