Wall clock time and date at job start Wed Apr 1 2020 05:48:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42896 * 1
3 3 C 1.35901 * 117.00277 * 2 1
4 4 C 1.38756 * 120.05322 * 359.97438 * 3 2 1
5 5 C 1.38127 * 119.94520 * 180.02562 * 4 3 2
6 6 C 1.50699 * 119.97000 * 179.97438 * 5 4 3
7 7 C 1.38289 * 120.05087 * 0.02562 * 5 4 3
8 8 C 1.38238 * 120.11534 * 359.70683 * 7 5 4
9 9 C 1.38169 * 120.05665 * 0.54465 * 8 7 5
10 10 C 1.50696 * 120.03246 * 179.74674 * 9 8 7
11 11 N 1.46499 * 109.47668 * 259.73069 * 10 9 8
12 12 C 1.34769 * 120.00289 * 179.97438 * 11 10 9
13 13 O 1.21586 * 120.00117 * 359.97438 * 12 11 10
14 14 N 1.34770 * 120.00211 * 180.02562 * 12 11 10
15 15 C 1.46502 * 120.00510 * 180.02562 * 14 12 11
16 16 C 1.53044 * 109.45520 * 275.02762 * 15 14 12
17 17 C 1.53195 * 109.30861 * 178.59671 * 16 15 14
18 18 N 1.46926 * 108.76720 * 54.65584 * 17 16 15
19 19 C 1.36936 * 120.63527 * 126.40307 * 18 17 16
20 20 H 1.07995 * 120.00027 * 331.82762 * 19 18 17
21 21 C 1.38818 * 120.00108 * 151.82351 * 19 18 17
22 22 N 1.31619 * 119.99996 * 343.07620 * 21 19 18
23 23 Si 1.86802 * 119.99711 * 163.07545 * 21 19 18
24 24 H 1.48496 * 109.46939 * 90.00118 * 23 21 19
25 25 H 1.48500 * 109.46821 * 210.00159 * 23 21 19
26 26 H 1.48500 * 109.47102 * 329.99793 * 23 21 19
27 27 C 1.46926 * 118.73636 * 306.38048 * 18 17 16
28 28 C 1.53033 * 109.46525 * 154.96815 * 15 14 12
29 29 H 1.09000 * 109.47005 * 299.99990 * 1 2 3
30 30 H 1.08996 * 109.47080 * 60.00141 * 1 2 3
31 31 H 1.09004 * 109.47150 * 180.02562 * 1 2 3
32 32 H 1.08002 * 120.02633 * 0.02562 * 4 3 2
33 33 H 1.08997 * 109.46639 * 90.00314 * 6 5 4
34 34 H 1.09004 * 109.46696 * 209.99767 * 6 5 4
35 35 H 1.08991 * 109.47366 * 329.99752 * 6 5 4
36 36 H 1.08000 * 119.93872 * 179.97438 * 7 5 4
37 37 H 1.08001 * 119.97490 * 180.27667 * 8 7 5
38 38 H 1.09000 * 109.47258 * 139.72219 * 10 9 8
39 39 H 1.09004 * 109.46623 * 19.73275 * 10 9 8
40 40 H 0.97000 * 119.99467 * 359.97438 * 11 10 9
41 41 H 0.97002 * 120.00127 * 359.97438 * 14 12 11
42 42 H 1.09003 * 109.45654 * 34.99086 * 15 14 12
43 43 H 1.08996 * 109.49699 * 298.55708 * 16 15 14
44 44 H 1.08994 * 109.49860 * 58.66232 * 16 15 14
45 45 H 1.09003 * 109.60365 * 294.86399 * 17 16 15
46 46 H 1.08999 * 109.70149 * 174.50169 * 17 16 15
47 47 H 0.97003 * 119.99976 * 179.97438 * 22 21 19
48 48 H 1.08996 * 109.59097 * 293.82089 * 27 18 17
49 49 H 1.09002 * 109.70554 * 173.46684 * 27 18 17
50 50 H 1.09000 * 109.49876 * 301.33632 * 28 15 14
51 51 H 1.08998 * 109.49884 * 61.43581 * 28 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0460 1.2109 0.0000
4 6 1.2914 2.3753 -0.0005
5 6 1.9209 3.6048 -0.0011
6 6 1.1019 4.8698 -0.0022
7 6 3.3019 3.6757 -0.0016
8 6 4.0560 2.5171 0.0045
9 6 3.4311 1.2848 -0.0002
10 6 4.2537 0.0221 0.0007
11 7 4.3193 -0.5191 -1.3591
12 6 5.0071 -1.6525 -1.6008
13 8 5.5737 -2.2258 -0.6904
14 7 5.0679 -2.1501 -2.8518
15 6 5.8152 -3.3825 -3.1146
16 6 7.2921 -3.0464 -3.3331
17 6 8.0761 -4.3405 -3.5728
18 7 7.4530 -5.0717 -4.6845
19 6 8.1979 -5.4703 -5.7621
20 1 9.0758 -4.9103 -6.0486
21 6 7.8248 -6.5943 -6.4863
22 7 6.9796 -7.4602 -5.9684
23 14 8.5223 -6.8778 -8.1959
24 1 9.7770 -7.6655 -8.0941
25 1 7.5345 -7.6240 -9.0160
26 1 8.8098 -5.5693 -8.8365
27 6 6.0153 -5.3675 -4.6177
28 6 5.2545 -4.0619 -4.3660
29 1 -0.3633 0.5138 0.8900
30 1 -0.3633 0.5138 -0.8900
31 1 -0.3634 -1.0277 0.0005
32 1 0.2128 2.3203 -0.0005
33 1 0.9041 5.1754 1.0251
34 1 1.6518 5.6581 -0.5163
35 1 0.1577 4.6909 -0.5163
36 1 3.7922 4.6380 -0.0024
37 1 5.1344 2.5752 0.0086
38 1 3.7925 -0.7115 0.6619
39 1 5.2612 0.2451 0.3521
40 1 3.8677 -0.0615 -2.0854
41 1 4.6163 -1.6926 -3.5782
42 1 5.7181 -4.0548 -2.2620
43 1 7.3923 -2.3942 -4.2007
44 1 7.6848 -2.5416 -2.4506
45 1 8.0522 -4.9547 -2.6726
46 1 9.1094 -4.1028 -3.8255
47 1 6.7186 -8.2454 -6.4746
48 1 5.8232 -6.0653 -3.8028
49 1 5.6863 -5.8064 -5.5597
50 1 4.1967 -4.2798 -4.2187
51 1 5.3740 -3.4000 -5.2237
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000610707207.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:48:38
Heat of formation + Delta-G solvation = -27.260394 kcal
Electronic energy + Delta-G solvation = -30178.233071 eV
Core-core repulsion = 26078.204192 eV
Total energy + Delta-G solvation = -4100.028879 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.14 seconds
Orbital eigenvalues (eV)
-40.78067 -39.70443 -38.01116 -37.41483 -35.24860 -34.21821 -32.87219 -31.88127
-30.52680 -30.06329 -29.41787 -28.51537 -27.66750 -25.18582 -24.32626 -22.64161
-22.21207 -21.90015 -21.32363 -20.46126 -19.34627 -18.25535 -17.76230 -16.87508
-16.70219 -16.29833 -16.00819 -15.59271 -15.08526 -14.81070 -14.67909 -14.37567
-14.27376 -14.08564 -14.01390 -13.66160 -13.48568 -13.20390 -12.97565 -12.89665
-12.65574 -12.56452 -12.36159 -12.24804 -12.18364 -11.73364 -11.38412 -11.33431
-11.17273 -11.06402 -10.78028 -10.66776 -10.43321 -10.20328 -9.98040 -9.94573
-9.69065 -9.48139 -9.16935 -9.01172 -8.52932 -8.48795 -8.35404 -6.62760
-5.75258 -3.16930 0.81415 1.04935 2.90665 2.92786 3.39629 3.42587
3.46703 3.49164 3.52681 4.23414 4.38265 4.53230 4.55045 4.55291
4.65229 4.76426 4.77271 4.85871 5.12452 5.13111 5.17551 5.23514
5.32753 5.39817 5.41744 5.48780 5.57735 5.60763 5.70122 5.79799
5.88861 5.99235 6.09801 6.16507 6.18586 6.37489 6.39735 6.45498
6.56359 6.58729 6.66562 6.70302 6.88051 6.98925 7.03676 7.07554
7.24484 7.38344 7.67782 7.83437 8.29426 8.49273 8.90549 9.25406
9.88946 10.46460 11.33687
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.022196 B = 0.001840 C = 0.001810
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1261.166587 B =15209.892082 C =15461.739337
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.027 3.973
2 O -0.306 6.306
3 C 0.150 3.850
4 C -0.214 4.214
5 C -0.042 4.042
6 C -0.117 4.117
7 C -0.161 4.161
8 C -0.057 4.057
9 C -0.145 4.145
10 C 0.193 3.807
11 N -0.744 5.744
12 C 0.703 3.297
13 O -0.593 6.593
14 N -0.740 5.740
15 C 0.170 3.830
16 C -0.139 4.139
17 C 0.147 3.853
18 N -0.593 5.593
19 C -0.250 4.250
20 H 0.065 0.935
21 C 0.001 3.999
22 N -0.903 5.903
23 Si 0.902 3.098
24 H -0.287 1.287
25 H -0.290 1.290
26 H -0.280 1.280
27 C 0.175 3.825
28 C -0.146 4.146
29 H 0.055 0.945
30 H 0.055 0.945
31 H 0.101 0.899
32 H 0.128 0.872
33 H 0.073 0.927
34 H 0.069 0.931
35 H 0.066 0.934
36 H 0.125 0.875
37 H 0.133 0.867
38 H 0.074 0.926
39 H 0.071 0.929
40 H 0.393 0.607
41 H 0.390 0.610
42 H 0.081 0.919
43 H 0.056 0.944
44 H 0.054 0.946
45 H 0.020 0.980
46 H 0.055 0.945
47 H 0.253 0.747
48 H 0.021 0.979
49 H 0.091 0.909
50 H 0.053 0.947
51 H 0.058 0.942
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.716 24.612 12.129 31.621
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.068 4.068
2 O -0.219 6.219
3 C 0.103 3.897
4 C -0.233 4.233
5 C -0.042 4.042
6 C -0.174 4.174
7 C -0.180 4.180
8 C -0.075 4.075
9 C -0.146 4.146
10 C 0.069 3.931
11 N -0.400 5.400
12 C 0.403 3.597
13 O -0.471 6.471
14 N -0.393 5.393
15 C 0.066 3.934
16 C -0.179 4.179
17 C 0.020 3.980
18 N -0.316 5.316
19 C -0.380 4.380
20 H 0.083 0.917
21 C -0.198 4.198
22 N -0.548 5.548
23 Si 0.731 3.269
24 H -0.214 1.214
25 H -0.216 1.216
26 H -0.205 1.205
27 C 0.048 3.952
28 C -0.186 4.186
29 H 0.073 0.927
30 H 0.074 0.926
31 H 0.120 0.880
32 H 0.146 0.854
33 H 0.092 0.908
34 H 0.088 0.912
35 H 0.085 0.915
36 H 0.143 0.857
37 H 0.151 0.849
38 H 0.093 0.907
39 H 0.089 0.911
40 H 0.226 0.774
41 H 0.223 0.777
42 H 0.099 0.901
43 H 0.075 0.925
44 H 0.073 0.927
45 H 0.038 0.962
46 H 0.073 0.927
47 H 0.063 0.937
48 H 0.039 0.961
49 H 0.109 0.891
50 H 0.072 0.928
51 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges -15.148 23.678 12.912 30.933
hybrid contribution -0.484 0.450 -1.541 1.677
sum -15.632 24.128 11.370 30.916
Atomic orbital electron populations
1.23090 0.78309 1.04249 1.01189 1.86182 1.21332 1.26347 1.88024
1.18886 0.91690 0.84381 0.94717 1.21104 0.99969 0.91739 1.10470
1.19755 0.94037 0.94530 0.95866 1.20838 0.99410 0.94570 1.02570
1.20948 0.93103 0.98535 1.05378 1.20976 1.00164 0.90758 0.95637
1.19289 0.90559 0.95713 1.09041 1.19725 0.98498 0.91150 0.83698
1.45125 1.57465 1.27070 1.10351 1.15993 0.79574 0.80493 0.83673
1.90912 1.50961 1.61356 1.43862 1.45526 1.57133 1.29109 1.07574
1.20882 0.90633 0.83415 0.98501 1.22386 0.95385 0.99877 1.00291
1.20882 0.95312 0.90685 0.91076 1.44091 1.03971 1.65019 1.18474
1.19180 1.09153 1.05826 1.03817 0.91711 1.25053 0.99959 0.95073
0.99687 1.70030 1.37217 1.11323 1.36234 0.86310 0.78224 0.77737
0.84581 1.21417 1.21617 1.20548 1.20735 0.82671 0.90055 1.01730
1.22537 0.99196 1.01008 0.95852 0.92687 0.92623 0.88021 0.85387
0.90839 0.91158 0.91488 0.85714 0.84948 0.90742 0.91065 0.77445
0.77748 0.90134 0.92529 0.92697 0.96168 0.92653 0.93657 0.96106
0.89097 0.92829 0.92299
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.16 9.81 101.05 0.99 1.15 16
2 O -0.31 -3.01 9.73 -19.43 -0.19 -3.20 16
3 C 0.15 1.41 6.66 -39.21 -0.26 1.15 16
4 C -0.21 -1.65 8.69 -39.43 -0.34 -1.99 16
5 C -0.04 -0.29 5.88 -104.64 -0.62 -0.91 16
6 C -0.12 -0.53 10.01 36.01 0.36 -0.17 16
7 C -0.16 -1.16 9.70 -39.56 -0.38 -1.55 16
8 C -0.06 -0.46 9.66 -39.61 -0.38 -0.85 16
9 C -0.14 -1.40 5.26 -104.47 -0.55 -1.95 16
10 C 0.19 2.25 5.46 -5.20 -0.03 2.22 16
11 N -0.74 -9.19 5.55 -66.42 -0.37 -9.56 16
12 C 0.70 11.41 8.53 -86.93 -0.74 10.66 16
13 O -0.59 -12.14 16.01 5.29 0.08 -12.06 16
14 N -0.74 -11.29 5.08 -58.64 -0.30 -11.58 16
15 C 0.17 3.13 2.42 -67.89 -0.16 2.97 16
16 C -0.14 -2.68 5.65 -26.61 -0.15 -2.83 16
17 C 0.15 3.29 6.52 -3.71 -0.02 3.26 16
18 N -0.59 -15.14 2.99 -172.32 -0.52 -15.66 16
19 C -0.25 -6.94 9.58 -15.06 -0.14 -7.08 16
20 H 0.07 1.77 7.88 -52.49 -0.41 1.35 16
21 C 0.00 0.02 4.92 -17.43 -0.09 -0.07 16
22 N -0.90 -26.39 11.19 55.49 0.62 -25.77 16
23 Si 0.90 21.78 29.59 -169.99 -5.03 16.75 16
24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16
25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16
26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16
27 C 0.17 4.20 5.30 -3.71 -0.02 4.18 16
28 C -0.15 -2.77 5.55 -26.61 -0.15 -2.92 16
29 H 0.05 0.26 7.66 -51.93 -0.40 -0.13 16
30 H 0.06 0.27 7.66 -51.93 -0.40 -0.12 16
31 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16
32 H 0.13 0.75 6.30 -52.49 -0.33 0.42 16
33 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16
34 H 0.07 0.27 8.08 -51.93 -0.42 -0.15 16
35 H 0.07 0.26 8.08 -51.93 -0.42 -0.16 16
36 H 0.12 0.67 8.06 -52.49 -0.42 0.24 16
37 H 0.13 0.90 8.03 -52.49 -0.42 0.48 16
38 H 0.07 0.99 7.86 -51.93 -0.41 0.58 16
39 H 0.07 0.84 8.00 -51.93 -0.42 0.42 16
40 H 0.39 4.00 8.48 -40.82 -0.35 3.65 16
41 H 0.39 4.84 8.62 -40.82 -0.35 4.49 16
42 H 0.08 1.69 7.58 -51.93 -0.39 1.29 16
43 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16
44 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16
45 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16
46 H 0.05 1.20 7.93 -51.93 -0.41 0.79 16
47 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16
48 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16
49 H 0.09 2.41 6.07 -51.93 -0.31 2.10 16
50 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16
51 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16
LS Contribution 410.81 15.07 6.19 6.19
Total: -1.00 -33.83 410.81 -10.58 -44.40
By element:
Atomic # 1 Polarization: 13.59 SS G_CDS: -8.38 Total: 5.21 kcal
Atomic # 6 Polarization: 7.96 SS G_CDS: -2.69 Total: 5.28 kcal
Atomic # 7 Polarization: -62.01 SS G_CDS: -0.56 Total: -62.57 kcal
Atomic # 8 Polarization: -15.16 SS G_CDS: -0.10 Total: -15.26 kcal
Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.75 kcal
Total LS contribution 6.19 Total: 6.19 kcal
Total: -33.83 -10.58 -44.40 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000610707207.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 17.142 kcal
(2) G-P(sol) polarization free energy of solvation -33.827 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.684 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.576 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.403 kcal
(6) G-S(sol) free energy of system = (1) + (5) -27.260 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.14 seconds