Wall clock time and date at job start Wed Apr 1 2020 05:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35901 * 117.00277 * 2 1 4 4 C 1.38756 * 120.05322 * 359.97438 * 3 2 1 5 5 C 1.38127 * 119.94520 * 180.02562 * 4 3 2 6 6 C 1.50699 * 119.97000 * 179.97438 * 5 4 3 7 7 C 1.38289 * 120.05087 * 0.02562 * 5 4 3 8 8 C 1.38238 * 120.11534 * 359.70683 * 7 5 4 9 9 C 1.38169 * 120.05665 * 0.54465 * 8 7 5 10 10 C 1.50696 * 120.03246 * 179.74674 * 9 8 7 11 11 N 1.46499 * 109.47668 * 259.73069 * 10 9 8 12 12 C 1.34769 * 120.00289 * 179.97438 * 11 10 9 13 13 O 1.21586 * 120.00117 * 359.97438 * 12 11 10 14 14 N 1.34770 * 120.00211 * 180.02562 * 12 11 10 15 15 C 1.46502 * 120.00510 * 180.02562 * 14 12 11 16 16 C 1.53044 * 109.45520 * 275.02762 * 15 14 12 17 17 C 1.53195 * 109.30861 * 178.59671 * 16 15 14 18 18 N 1.46926 * 108.76720 * 54.65584 * 17 16 15 19 19 C 1.36936 * 120.63527 * 126.40307 * 18 17 16 20 20 H 1.07995 * 120.00027 * 331.82762 * 19 18 17 21 21 C 1.38818 * 120.00108 * 151.82351 * 19 18 17 22 22 N 1.31619 * 119.99996 * 343.07620 * 21 19 18 23 23 Si 1.86802 * 119.99711 * 163.07545 * 21 19 18 24 24 H 1.48496 * 109.46939 * 90.00118 * 23 21 19 25 25 H 1.48500 * 109.46821 * 210.00159 * 23 21 19 26 26 H 1.48500 * 109.47102 * 329.99793 * 23 21 19 27 27 C 1.46926 * 118.73636 * 306.38048 * 18 17 16 28 28 C 1.53033 * 109.46525 * 154.96815 * 15 14 12 29 29 H 1.09000 * 109.47005 * 299.99990 * 1 2 3 30 30 H 1.08996 * 109.47080 * 60.00141 * 1 2 3 31 31 H 1.09004 * 109.47150 * 180.02562 * 1 2 3 32 32 H 1.08002 * 120.02633 * 0.02562 * 4 3 2 33 33 H 1.08997 * 109.46639 * 90.00314 * 6 5 4 34 34 H 1.09004 * 109.46696 * 209.99767 * 6 5 4 35 35 H 1.08991 * 109.47366 * 329.99752 * 6 5 4 36 36 H 1.08000 * 119.93872 * 179.97438 * 7 5 4 37 37 H 1.08001 * 119.97490 * 180.27667 * 8 7 5 38 38 H 1.09000 * 109.47258 * 139.72219 * 10 9 8 39 39 H 1.09004 * 109.46623 * 19.73275 * 10 9 8 40 40 H 0.97000 * 119.99467 * 359.97438 * 11 10 9 41 41 H 0.97002 * 120.00127 * 359.97438 * 14 12 11 42 42 H 1.09003 * 109.45654 * 34.99086 * 15 14 12 43 43 H 1.08996 * 109.49699 * 298.55708 * 16 15 14 44 44 H 1.08994 * 109.49860 * 58.66232 * 16 15 14 45 45 H 1.09003 * 109.60365 * 294.86399 * 17 16 15 46 46 H 1.08999 * 109.70149 * 174.50169 * 17 16 15 47 47 H 0.97003 * 119.99976 * 179.97438 * 22 21 19 48 48 H 1.08996 * 109.59097 * 293.82089 * 27 18 17 49 49 H 1.09002 * 109.70554 * 173.46684 * 27 18 17 50 50 H 1.09000 * 109.49876 * 301.33632 * 28 15 14 51 51 H 1.08998 * 109.49884 * 61.43581 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9209 3.6048 -0.0011 6 6 1.1019 4.8698 -0.0022 7 6 3.3019 3.6757 -0.0016 8 6 4.0560 2.5171 0.0045 9 6 3.4311 1.2848 -0.0002 10 6 4.2537 0.0221 0.0007 11 7 4.3193 -0.5191 -1.3591 12 6 5.0071 -1.6525 -1.6008 13 8 5.5737 -2.2258 -0.6904 14 7 5.0679 -2.1501 -2.8518 15 6 5.8152 -3.3825 -3.1146 16 6 7.2921 -3.0464 -3.3331 17 6 8.0761 -4.3405 -3.5728 18 7 7.4530 -5.0717 -4.6845 19 6 8.1979 -5.4703 -5.7621 20 1 9.0758 -4.9103 -6.0486 21 6 7.8248 -6.5943 -6.4863 22 7 6.9796 -7.4602 -5.9684 23 14 8.5223 -6.8778 -8.1959 24 1 9.7770 -7.6655 -8.0941 25 1 7.5345 -7.6240 -9.0160 26 1 8.8098 -5.5693 -8.8365 27 6 6.0153 -5.3675 -4.6177 28 6 5.2545 -4.0619 -4.3660 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 0.2128 2.3203 -0.0005 33 1 0.9041 5.1754 1.0251 34 1 1.6518 5.6581 -0.5163 35 1 0.1577 4.6909 -0.5163 36 1 3.7922 4.6380 -0.0024 37 1 5.1344 2.5752 0.0086 38 1 3.7925 -0.7115 0.6619 39 1 5.2612 0.2451 0.3521 40 1 3.8677 -0.0615 -2.0854 41 1 4.6163 -1.6926 -3.5782 42 1 5.7181 -4.0548 -2.2620 43 1 7.3923 -2.3942 -4.2007 44 1 7.6848 -2.5416 -2.4506 45 1 8.0522 -4.9547 -2.6726 46 1 9.1094 -4.1028 -3.8255 47 1 6.7186 -8.2454 -6.4746 48 1 5.8232 -6.0653 -3.8028 49 1 5.6863 -5.8064 -5.5597 50 1 4.1967 -4.2798 -4.2187 51 1 5.3740 -3.4000 -5.2237 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610707207.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:48:38 Heat of formation + Delta-G solvation = -27.260394 kcal Electronic energy + Delta-G solvation = -30178.233071 eV Core-core repulsion = 26078.204192 eV Total energy + Delta-G solvation = -4100.028879 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.78067 -39.70443 -38.01116 -37.41483 -35.24860 -34.21821 -32.87219 -31.88127 -30.52680 -30.06329 -29.41787 -28.51537 -27.66750 -25.18582 -24.32626 -22.64161 -22.21207 -21.90015 -21.32363 -20.46126 -19.34627 -18.25535 -17.76230 -16.87508 -16.70219 -16.29833 -16.00819 -15.59271 -15.08526 -14.81070 -14.67909 -14.37567 -14.27376 -14.08564 -14.01390 -13.66160 -13.48568 -13.20390 -12.97565 -12.89665 -12.65574 -12.56452 -12.36159 -12.24804 -12.18364 -11.73364 -11.38412 -11.33431 -11.17273 -11.06402 -10.78028 -10.66776 -10.43321 -10.20328 -9.98040 -9.94573 -9.69065 -9.48139 -9.16935 -9.01172 -8.52932 -8.48795 -8.35404 -6.62760 -5.75258 -3.16930 0.81415 1.04935 2.90665 2.92786 3.39629 3.42587 3.46703 3.49164 3.52681 4.23414 4.38265 4.53230 4.55045 4.55291 4.65229 4.76426 4.77271 4.85871 5.12452 5.13111 5.17551 5.23514 5.32753 5.39817 5.41744 5.48780 5.57735 5.60763 5.70122 5.79799 5.88861 5.99235 6.09801 6.16507 6.18586 6.37489 6.39735 6.45498 6.56359 6.58729 6.66562 6.70302 6.88051 6.98925 7.03676 7.07554 7.24484 7.38344 7.67782 7.83437 8.29426 8.49273 8.90549 9.25406 9.88946 10.46460 11.33687 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022196 B = 0.001840 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.166587 B =15209.892082 C =15461.739337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.306 6.306 3 C 0.150 3.850 4 C -0.214 4.214 5 C -0.042 4.042 6 C -0.117 4.117 7 C -0.161 4.161 8 C -0.057 4.057 9 C -0.145 4.145 10 C 0.193 3.807 11 N -0.744 5.744 12 C 0.703 3.297 13 O -0.593 6.593 14 N -0.740 5.740 15 C 0.170 3.830 16 C -0.139 4.139 17 C 0.147 3.853 18 N -0.593 5.593 19 C -0.250 4.250 20 H 0.065 0.935 21 C 0.001 3.999 22 N -0.903 5.903 23 Si 0.902 3.098 24 H -0.287 1.287 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.175 3.825 28 C -0.146 4.146 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.101 0.899 32 H 0.128 0.872 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.125 0.875 37 H 0.133 0.867 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.393 0.607 41 H 0.390 0.610 42 H 0.081 0.919 43 H 0.056 0.944 44 H 0.054 0.946 45 H 0.020 0.980 46 H 0.055 0.945 47 H 0.253 0.747 48 H 0.021 0.979 49 H 0.091 0.909 50 H 0.053 0.947 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.716 24.612 12.129 31.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.219 6.219 3 C 0.103 3.897 4 C -0.233 4.233 5 C -0.042 4.042 6 C -0.174 4.174 7 C -0.180 4.180 8 C -0.075 4.075 9 C -0.146 4.146 10 C 0.069 3.931 11 N -0.400 5.400 12 C 0.403 3.597 13 O -0.471 6.471 14 N -0.393 5.393 15 C 0.066 3.934 16 C -0.179 4.179 17 C 0.020 3.980 18 N -0.316 5.316 19 C -0.380 4.380 20 H 0.083 0.917 21 C -0.198 4.198 22 N -0.548 5.548 23 Si 0.731 3.269 24 H -0.214 1.214 25 H -0.216 1.216 26 H -0.205 1.205 27 C 0.048 3.952 28 C -0.186 4.186 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.120 0.880 32 H 0.146 0.854 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.143 0.857 37 H 0.151 0.849 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.226 0.774 41 H 0.223 0.777 42 H 0.099 0.901 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.038 0.962 46 H 0.073 0.927 47 H 0.063 0.937 48 H 0.039 0.961 49 H 0.109 0.891 50 H 0.072 0.928 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.148 23.678 12.912 30.933 hybrid contribution -0.484 0.450 -1.541 1.677 sum -15.632 24.128 11.370 30.916 Atomic orbital electron populations 1.23090 0.78309 1.04249 1.01189 1.86182 1.21332 1.26347 1.88024 1.18886 0.91690 0.84381 0.94717 1.21104 0.99969 0.91739 1.10470 1.19755 0.94037 0.94530 0.95866 1.20838 0.99410 0.94570 1.02570 1.20948 0.93103 0.98535 1.05378 1.20976 1.00164 0.90758 0.95637 1.19289 0.90559 0.95713 1.09041 1.19725 0.98498 0.91150 0.83698 1.45125 1.57465 1.27070 1.10351 1.15993 0.79574 0.80493 0.83673 1.90912 1.50961 1.61356 1.43862 1.45526 1.57133 1.29109 1.07574 1.20882 0.90633 0.83415 0.98501 1.22386 0.95385 0.99877 1.00291 1.20882 0.95312 0.90685 0.91076 1.44091 1.03971 1.65019 1.18474 1.19180 1.09153 1.05826 1.03817 0.91711 1.25053 0.99959 0.95073 0.99687 1.70030 1.37217 1.11323 1.36234 0.86310 0.78224 0.77737 0.84581 1.21417 1.21617 1.20548 1.20735 0.82671 0.90055 1.01730 1.22537 0.99196 1.01008 0.95852 0.92687 0.92623 0.88021 0.85387 0.90839 0.91158 0.91488 0.85714 0.84948 0.90742 0.91065 0.77445 0.77748 0.90134 0.92529 0.92697 0.96168 0.92653 0.93657 0.96106 0.89097 0.92829 0.92299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.01 9.73 -19.43 -0.19 -3.20 16 3 C 0.15 1.41 6.66 -39.21 -0.26 1.15 16 4 C -0.21 -1.65 8.69 -39.43 -0.34 -1.99 16 5 C -0.04 -0.29 5.88 -104.64 -0.62 -0.91 16 6 C -0.12 -0.53 10.01 36.01 0.36 -0.17 16 7 C -0.16 -1.16 9.70 -39.56 -0.38 -1.55 16 8 C -0.06 -0.46 9.66 -39.61 -0.38 -0.85 16 9 C -0.14 -1.40 5.26 -104.47 -0.55 -1.95 16 10 C 0.19 2.25 5.46 -5.20 -0.03 2.22 16 11 N -0.74 -9.19 5.55 -66.42 -0.37 -9.56 16 12 C 0.70 11.41 8.53 -86.93 -0.74 10.66 16 13 O -0.59 -12.14 16.01 5.29 0.08 -12.06 16 14 N -0.74 -11.29 5.08 -58.64 -0.30 -11.58 16 15 C 0.17 3.13 2.42 -67.89 -0.16 2.97 16 16 C -0.14 -2.68 5.65 -26.61 -0.15 -2.83 16 17 C 0.15 3.29 6.52 -3.71 -0.02 3.26 16 18 N -0.59 -15.14 2.99 -172.32 -0.52 -15.66 16 19 C -0.25 -6.94 9.58 -15.06 -0.14 -7.08 16 20 H 0.07 1.77 7.88 -52.49 -0.41 1.35 16 21 C 0.00 0.02 4.92 -17.43 -0.09 -0.07 16 22 N -0.90 -26.39 11.19 55.49 0.62 -25.77 16 23 Si 0.90 21.78 29.59 -169.99 -5.03 16.75 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 C 0.17 4.20 5.30 -3.71 -0.02 4.18 16 28 C -0.15 -2.77 5.55 -26.61 -0.15 -2.92 16 29 H 0.05 0.26 7.66 -51.93 -0.40 -0.13 16 30 H 0.06 0.27 7.66 -51.93 -0.40 -0.12 16 31 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.13 0.75 6.30 -52.49 -0.33 0.42 16 33 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.27 8.08 -51.93 -0.42 -0.15 16 35 H 0.07 0.26 8.08 -51.93 -0.42 -0.16 16 36 H 0.12 0.67 8.06 -52.49 -0.42 0.24 16 37 H 0.13 0.90 8.03 -52.49 -0.42 0.48 16 38 H 0.07 0.99 7.86 -51.93 -0.41 0.58 16 39 H 0.07 0.84 8.00 -51.93 -0.42 0.42 16 40 H 0.39 4.00 8.48 -40.82 -0.35 3.65 16 41 H 0.39 4.84 8.62 -40.82 -0.35 4.49 16 42 H 0.08 1.69 7.58 -51.93 -0.39 1.29 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.05 1.20 7.93 -51.93 -0.41 0.79 16 47 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 48 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.09 2.41 6.07 -51.93 -0.31 2.10 16 50 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 51 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 410.81 15.07 6.19 6.19 Total: -1.00 -33.83 410.81 -10.58 -44.40 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -8.38 Total: 5.21 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: -2.69 Total: 5.28 kcal Atomic # 7 Polarization: -62.01 SS G_CDS: -0.56 Total: -62.57 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -0.10 Total: -15.26 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -33.83 -10.58 -44.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610707207.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.142 kcal (2) G-P(sol) polarization free energy of solvation -33.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds