Wall clock time and date at job start Wed Apr 1 2020 05:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35901 * 117.00277 * 2 1 4 4 C 1.38756 * 120.05322 * 359.97438 * 3 2 1 5 5 C 1.38127 * 119.94520 * 180.02562 * 4 3 2 6 6 C 1.50699 * 119.97000 * 179.97438 * 5 4 3 7 7 C 1.38289 * 120.05087 * 0.02562 * 5 4 3 8 8 C 1.38238 * 120.11534 * 359.70683 * 7 5 4 9 9 C 1.38169 * 120.05665 * 0.54465 * 8 7 5 10 10 C 1.50696 * 120.03246 * 179.74674 * 9 8 7 11 11 N 1.46499 * 109.47668 * 259.73069 * 10 9 8 12 12 C 1.34769 * 120.00289 * 179.97438 * 11 10 9 13 13 O 1.21586 * 120.00117 * 359.97438 * 12 11 10 14 14 N 1.34770 * 120.00211 * 180.02562 * 12 11 10 15 15 C 1.46502 * 120.00510 * 180.02562 * 14 12 11 16 16 C 1.53044 * 109.45520 * 275.02762 * 15 14 12 17 17 C 1.53195 * 109.30861 * 178.59671 * 16 15 14 18 18 N 1.46926 * 108.76720 * 54.65584 * 17 16 15 19 19 C 1.36936 * 120.63527 * 126.40307 * 18 17 16 20 20 H 1.07995 * 120.00027 * 331.82762 * 19 18 17 21 21 C 1.38818 * 120.00108 * 151.82351 * 19 18 17 22 22 N 1.31619 * 119.99996 * 343.07620 * 21 19 18 23 23 Si 1.86802 * 119.99711 * 163.07545 * 21 19 18 24 24 H 1.48496 * 109.46939 * 90.00118 * 23 21 19 25 25 H 1.48500 * 109.46821 * 210.00159 * 23 21 19 26 26 H 1.48500 * 109.47102 * 329.99793 * 23 21 19 27 27 C 1.46926 * 118.73636 * 306.38048 * 18 17 16 28 28 C 1.53033 * 109.46525 * 154.96815 * 15 14 12 29 29 H 1.09000 * 109.47005 * 299.99990 * 1 2 3 30 30 H 1.08996 * 109.47080 * 60.00141 * 1 2 3 31 31 H 1.09004 * 109.47150 * 180.02562 * 1 2 3 32 32 H 1.08002 * 120.02633 * 0.02562 * 4 3 2 33 33 H 1.08997 * 109.46639 * 90.00314 * 6 5 4 34 34 H 1.09004 * 109.46696 * 209.99767 * 6 5 4 35 35 H 1.08991 * 109.47366 * 329.99752 * 6 5 4 36 36 H 1.08000 * 119.93872 * 179.97438 * 7 5 4 37 37 H 1.08001 * 119.97490 * 180.27667 * 8 7 5 38 38 H 1.09000 * 109.47258 * 139.72219 * 10 9 8 39 39 H 1.09004 * 109.46623 * 19.73275 * 10 9 8 40 40 H 0.97000 * 119.99467 * 359.97438 * 11 10 9 41 41 H 0.97002 * 120.00127 * 359.97438 * 14 12 11 42 42 H 1.09003 * 109.45654 * 34.99086 * 15 14 12 43 43 H 1.08996 * 109.49699 * 298.55708 * 16 15 14 44 44 H 1.08994 * 109.49860 * 58.66232 * 16 15 14 45 45 H 1.09003 * 109.60365 * 294.86399 * 17 16 15 46 46 H 1.08999 * 109.70149 * 174.50169 * 17 16 15 47 47 H 0.97003 * 119.99976 * 179.97438 * 22 21 19 48 48 H 1.08996 * 109.59097 * 293.82089 * 27 18 17 49 49 H 1.09002 * 109.70554 * 173.46684 * 27 18 17 50 50 H 1.09000 * 109.49876 * 301.33632 * 28 15 14 51 51 H 1.08998 * 109.49884 * 61.43581 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9209 3.6048 -0.0011 6 6 1.1019 4.8698 -0.0022 7 6 3.3019 3.6757 -0.0016 8 6 4.0560 2.5171 0.0045 9 6 3.4311 1.2848 -0.0002 10 6 4.2537 0.0221 0.0007 11 7 4.3193 -0.5191 -1.3591 12 6 5.0071 -1.6525 -1.6008 13 8 5.5737 -2.2258 -0.6904 14 7 5.0679 -2.1501 -2.8518 15 6 5.8152 -3.3825 -3.1146 16 6 7.2921 -3.0464 -3.3331 17 6 8.0761 -4.3405 -3.5728 18 7 7.4530 -5.0717 -4.6845 19 6 8.1979 -5.4703 -5.7621 20 1 9.0758 -4.9103 -6.0486 21 6 7.8248 -6.5943 -6.4863 22 7 6.9796 -7.4602 -5.9684 23 14 8.5223 -6.8778 -8.1959 24 1 9.7770 -7.6655 -8.0941 25 1 7.5345 -7.6240 -9.0160 26 1 8.8098 -5.5693 -8.8365 27 6 6.0153 -5.3675 -4.6177 28 6 5.2545 -4.0619 -4.3660 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 0.2128 2.3203 -0.0005 33 1 0.9041 5.1754 1.0251 34 1 1.6518 5.6581 -0.5163 35 1 0.1577 4.6909 -0.5163 36 1 3.7922 4.6380 -0.0024 37 1 5.1344 2.5752 0.0086 38 1 3.7925 -0.7115 0.6619 39 1 5.2612 0.2451 0.3521 40 1 3.8677 -0.0615 -2.0854 41 1 4.6163 -1.6926 -3.5782 42 1 5.7181 -4.0548 -2.2620 43 1 7.3923 -2.3942 -4.2007 44 1 7.6848 -2.5416 -2.4506 45 1 8.0522 -4.9547 -2.6726 46 1 9.1094 -4.1028 -3.8255 47 1 6.7186 -8.2454 -6.4746 48 1 5.8232 -6.0653 -3.8028 49 1 5.6863 -5.8064 -5.5597 50 1 4.1967 -4.2798 -4.2187 51 1 5.3740 -3.4000 -5.2237 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610707207.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:48:37 Heat of formation + Delta-G solvation = -49.161246 kcal Electronic energy + Delta-G solvation = -30179.182763 eV Core-core repulsion = 26078.204192 eV Total energy + Delta-G solvation = -4100.978572 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.50547 -40.93967 -39.10789 -38.56910 -36.35862 -35.80768 -34.06724 -33.34127 -31.76285 -31.17060 -31.03388 -29.24469 -28.29347 -26.86163 -25.34056 -23.93797 -23.56359 -23.20885 -21.99231 -21.80405 -21.03557 -19.51203 -18.72650 -18.35824 -17.56540 -17.37415 -16.83861 -16.65164 -16.39760 -16.27179 -15.84979 -15.41505 -15.32677 -15.19782 -15.07428 -14.89028 -14.75586 -14.46584 -14.41419 -14.03394 -13.83408 -13.60905 -13.19414 -13.05678 -13.01218 -12.98964 -12.74091 -12.59959 -12.50092 -12.28263 -12.22071 -12.00969 -11.86118 -11.85667 -11.75265 -11.55188 -11.39289 -11.21787 -10.54841 -10.29095 -9.76902 -9.69984 -9.12711 -8.69598 -7.86656 -5.32288 0.19995 0.46373 1.49082 1.49948 1.60358 1.79607 2.21169 2.36824 2.53040 2.73926 3.28267 3.42176 3.62398 3.68092 3.82441 3.91939 3.98015 4.08507 4.17292 4.27407 4.34440 4.36302 4.37437 4.47667 4.54877 4.64077 4.66731 4.71658 4.75135 4.81476 4.83304 4.84646 4.87495 4.93698 5.04192 5.08666 5.17338 5.24487 5.30740 5.32418 5.45282 5.47850 5.52091 5.62904 5.63903 5.65745 5.71033 5.85846 6.06078 6.40078 6.43340 7.15137 7.15413 7.64106 7.84844 8.38496 9.20624 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022196 B = 0.001840 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.166587 B =15209.892082 C =15461.739337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.333 6.333 3 C 0.137 3.863 4 C -0.218 4.218 5 C -0.042 4.042 6 C -0.117 4.117 7 C -0.165 4.165 8 C -0.060 4.060 9 C -0.161 4.161 10 C 0.198 3.802 11 N -0.724 5.724 12 C 0.701 3.299 13 O -0.638 6.638 14 N -0.727 5.727 15 C 0.182 3.818 16 C -0.123 4.123 17 C 0.145 3.855 18 N -0.608 5.608 19 C -0.263 4.263 20 H 0.068 0.932 21 C -0.051 4.051 22 N -0.936 5.936 23 Si 0.970 3.030 24 H -0.287 1.287 25 H -0.291 1.291 26 H -0.269 1.269 27 C 0.179 3.821 28 C -0.127 4.127 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.107 0.893 32 H 0.145 0.855 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.145 0.855 37 H 0.142 0.858 38 H 0.053 0.947 39 H 0.068 0.932 40 H 0.406 0.594 41 H 0.408 0.592 42 H 0.053 0.947 43 H 0.066 0.934 44 H 0.057 0.943 45 H 0.006 0.994 46 H 0.058 0.942 47 H 0.251 0.749 48 H -0.006 1.006 49 H 0.064 0.936 50 H 0.075 0.925 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.825 27.724 11.334 34.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.246 6.246 3 C 0.091 3.909 4 C -0.237 4.237 5 C -0.043 4.043 6 C -0.173 4.173 7 C -0.183 4.183 8 C -0.078 4.078 9 C -0.163 4.163 10 C 0.075 3.925 11 N -0.380 5.380 12 C 0.401 3.599 13 O -0.519 6.519 14 N -0.381 5.381 15 C 0.076 3.924 16 C -0.163 4.163 17 C 0.019 3.981 18 N -0.332 5.332 19 C -0.393 4.393 20 H 0.085 0.915 21 C -0.246 4.246 22 N -0.582 5.582 23 Si 0.798 3.202 24 H -0.213 1.213 25 H -0.218 1.218 26 H -0.194 1.194 27 C 0.053 3.947 28 C -0.167 4.167 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.126 0.874 32 H 0.163 0.837 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.163 0.837 37 H 0.160 0.840 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.242 0.758 41 H 0.244 0.756 42 H 0.072 0.928 43 H 0.085 0.915 44 H 0.076 0.924 45 H 0.024 0.976 46 H 0.077 0.923 47 H 0.060 0.940 48 H 0.012 0.988 49 H 0.083 0.917 50 H 0.093 0.907 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -16.295 26.863 12.105 33.671 hybrid contribution -0.173 -0.477 -1.198 1.301 sum -16.468 26.387 10.907 32.961 Atomic orbital electron populations 1.23298 0.76679 1.05109 1.02371 1.86141 1.23214 1.27017 1.88225 1.19048 0.91758 0.84872 0.95187 1.21329 1.00855 0.91387 1.10097 1.20132 0.94374 0.95338 0.94416 1.20898 0.99500 0.93489 1.03413 1.21231 0.93369 0.99003 1.04697 1.21132 1.00843 0.90558 0.95293 1.19164 0.90692 0.95118 1.11282 1.19648 0.98546 0.91703 0.82642 1.44985 1.56108 1.25648 1.11278 1.16124 0.79541 0.81049 0.83192 1.90888 1.52938 1.62855 1.45244 1.45126 1.56821 1.28124 1.08056 1.20484 0.90592 0.84214 0.97083 1.22179 0.95376 0.98068 1.00697 1.20967 0.96011 0.91575 0.89593 1.44342 1.04614 1.65300 1.18925 1.19518 1.09424 1.05873 1.04510 0.91464 1.25840 1.00673 0.94894 1.03222 1.70191 1.38703 1.11764 1.37527 0.85245 0.77204 0.77808 0.79971 1.21347 1.21758 1.19352 1.20563 0.82821 0.92074 0.99288 1.22254 0.99541 0.98427 0.96450 0.91485 0.91386 0.87446 0.83696 0.89926 0.90163 0.90644 0.83697 0.84031 0.92909 0.91417 0.75845 0.75591 0.92830 0.91526 0.92424 0.97595 0.92324 0.94020 0.98811 0.91725 0.90666 0.91064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.33 16 2 O -0.33 -6.36 9.73 -92.44 -0.90 -7.26 16 3 C 0.14 2.45 6.66 22.51 0.15 2.60 16 4 C -0.22 -2.93 8.69 22.37 0.19 -2.73 16 5 C -0.04 -0.49 5.88 -19.88 -0.12 -0.61 16 6 C -0.12 -0.70 10.01 71.24 0.71 0.01 16 7 C -0.16 -1.99 9.70 22.28 0.22 -1.77 16 8 C -0.06 -0.89 9.66 22.25 0.22 -0.67 16 9 C -0.16 -3.00 5.26 -19.77 -0.10 -3.10 16 10 C 0.20 4.64 5.46 85.63 0.47 5.11 16 11 N -0.72 -17.32 5.55 -482.32 -2.68 -20.00 16 12 C 0.70 22.35 8.53 179.06 1.53 23.88 16 13 O -0.64 -26.46 16.01 -3.99 -0.06 -26.52 16 14 N -0.73 -21.09 5.08 -457.70 -2.33 -23.42 16 15 C 0.18 6.60 2.42 45.02 0.11 6.71 16 16 C -0.12 -4.64 5.65 30.67 0.17 -4.47 16 17 C 0.14 6.52 6.52 86.36 0.56 7.08 16 18 N -0.61 -31.48 2.99 -699.09 -2.09 -33.57 16 19 C -0.26 -14.68 9.58 84.04 0.81 -13.87 16 20 H 0.07 3.65 7.88 -2.91 -0.02 3.62 16 21 C -0.05 -2.87 4.92 84.86 0.42 -2.45 16 22 N -0.94 -55.87 11.19 21.65 0.24 -55.63 16 23 Si 0.97 44.96 29.59 68.60 2.03 46.99 16 24 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 25 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 26 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 27 C 0.18 8.78 5.30 86.36 0.46 9.23 16 28 C -0.13 -4.71 5.55 30.67 0.17 -4.54 16 29 H 0.07 0.54 7.66 -2.39 -0.02 0.52 16 30 H 0.07 0.55 7.66 -2.39 -0.02 0.53 16 31 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.15 1.34 6.30 -2.91 -0.02 1.32 16 33 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 34 H 0.08 0.34 8.08 -2.39 -0.02 0.33 16 35 H 0.07 0.34 8.08 -2.39 -0.02 0.33 16 36 H 0.15 1.11 8.06 -2.91 -0.02 1.09 16 37 H 0.14 1.73 8.03 -2.91 -0.02 1.71 16 38 H 0.05 1.46 7.86 -2.39 -0.02 1.44 16 39 H 0.07 1.61 8.00 -2.39 -0.02 1.59 16 40 H 0.41 7.61 8.48 -92.71 -0.79 6.82 16 41 H 0.41 9.06 8.62 -92.71 -0.80 8.26 16 42 H 0.05 2.28 7.58 -2.39 -0.02 2.26 16 43 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 44 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 45 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 46 H 0.06 2.55 7.93 -2.39 -0.02 2.53 16 47 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 48 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 49 H 0.06 3.51 6.07 -2.39 -0.01 3.50 16 50 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 51 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -74.47 410.81 0.64 -73.83 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: -0.64 Total: 23.87 kcal Atomic # 6 Polarization: 14.65 SS G_CDS: 7.07 Total: 21.72 kcal Atomic # 7 Polarization: -125.77 SS G_CDS: -6.85 Total: -132.62 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -0.96 Total: -33.79 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -74.47 0.64 -73.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610707207.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.671 kcal (2) G-P(sol) polarization free energy of solvation -74.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds