Wall clock time and date at job start Wed Apr 1 2020 04:31:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 C 1.38238 * 120.00357 * 2 1
4 4 C 1.38228 * 119.99868 * 180.02562 * 3 2 1
5 5 C 1.38228 * 120.00526 * 0.02562 * 4 3 2
6 6 C 1.50703 * 120.00469 * 179.97438 * 5 4 3
7 7 H 1.09000 * 109.46629 * 25.00079 * 6 5 4
8 8 O 1.42893 * 109.47275 * 144.99932 * 6 5 4
9 9 C 1.53002 * 109.46933 * 265.00068 * 6 5 4
10 10 N 1.46504 * 109.46671 * 179.97438 * 9 6 5
11 11 C 1.34780 * 119.99697 * 180.02562 * 10 9 6
12 12 O 1.21588 * 119.99927 * 359.97438 * 11 10 9
13 13 N 1.34777 * 119.99762 * 179.97438 * 11 10 9
14 14 C 1.46500 * 119.99715 * 179.97438 * 13 11 10
15 15 C 1.53044 * 109.46097 * 275.02430 * 14 13 11
16 16 C 1.53189 * 109.31274 * 178.60012 * 15 14 13
17 17 N 1.46927 * 108.76435 * 54.65844 * 16 15 14
18 18 C 1.36935 * 120.63188 * 126.40602 * 17 16 15
19 19 H 1.08006 * 119.99525 * 331.81985 * 18 17 16
20 20 C 1.38806 * 120.00387 * 151.82754 * 18 17 16
21 21 N 1.31620 * 119.99808 * 343.07240 * 20 18 17
22 22 Si 1.86797 * 120.00593 * 163.07784 * 20 18 17
23 23 H 1.48507 * 109.46712 * 59.99525 * 22 20 18
24 24 H 1.48502 * 109.47360 * 179.97438 * 22 20 18
25 25 H 1.48496 * 109.46933 * 299.99807 * 22 20 18
26 26 C 1.46925 * 118.73955 * 306.38404 * 17 16 15
27 27 C 1.53037 * 109.45918 * 154.97228 * 14 13 11
28 28 C 1.38243 * 120.00028 * 0.24993 * 5 4 3
29 29 C 1.38234 * 119.99717 * 180.02562 * 2 1 3
30 30 H 1.09006 * 109.47241 * 89.99688 * 1 2 3
31 31 H 1.09000 * 109.47433 * 209.99959 * 1 2 3
32 32 H 1.09000 * 109.46696 * 330.00062 * 1 2 3
33 33 H 1.08000 * 119.99831 * 0.02562 * 3 2 1
34 34 H 1.08001 * 119.99744 * 179.97438 * 4 3 2
35 35 H 0.96700 * 114.00099 * 59.99892 * 8 6 5
36 36 H 1.08997 * 109.46995 * 299.99657 * 9 6 5
37 37 H 1.08997 * 109.47133 * 59.99850 * 9 6 5
38 38 H 0.96998 * 120.00428 * 0.02562 * 10 9 6
39 39 H 0.96998 * 120.00363 * 359.97438 * 13 11 10
40 40 H 1.09002 * 109.46159 * 34.99665 * 14 13 11
41 41 H 1.08996 * 109.49749 * 298.57190 * 15 14 13
42 42 H 1.08999 * 109.49536 * 58.66609 * 15 14 13
43 43 H 1.09000 * 109.60078 * 294.87439 * 16 15 14
44 44 H 1.08997 * 109.70321 * 174.50917 * 16 15 14
45 45 H 0.97004 * 120.00522 * 180.02562 * 21 20 18
46 46 H 1.09000 * 109.58652 * 293.81856 * 26 17 16
47 47 H 1.09000 * 109.70660 * 173.46573 * 26 17 16
48 48 H 1.09004 * 109.50025 * 301.33797 * 27 14 13
49 49 H 1.09000 * 109.49851 * 61.43438 * 27 14 13
50 50 H 1.07995 * 120.00295 * 179.72727 * 28 5 4
51 51 H 1.08000 * 120.00252 * 359.97438 * 29 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1982 1.1971 0.0000
4 6 3.5805 1.1970 -0.0005
5 6 4.2717 -0.0001 -0.0016
6 6 5.7787 -0.0002 -0.0028
7 1 6.1424 0.9310 0.4317
8 8 6.2556 -1.1041 0.7691
9 6 6.2875 -0.1253 -1.4403
10 7 7.7526 -0.1248 -1.4414
11 6 8.4256 -0.2254 -2.6048
12 8 7.8168 -0.3170 -3.6533
13 7 9.7733 -0.2244 -2.6059
14 6 10.5048 -0.3343 -3.8704
15 6 10.6511 -1.8102 -4.2482
16 6 11.3856 -1.9198 -5.5881
17 7 12.6589 -1.1933 -5.4899
18 6 13.8401 -1.8099 -5.8056
19 1 13.9397 -2.8788 -5.6874
20 6 14.9095 -1.0612 -6.2773
21 7 14.7091 0.1562 -6.7359
22 14 16.6331 -1.7811 -6.2614
23 1 16.6629 -3.0121 -7.0917
24 1 17.5894 -0.7885 -6.8141
25 1 17.0170 -2.1155 -4.8665
26 6 12.6407 0.2075 -5.0470
27 6 11.8917 0.2933 -3.7134
28 6 3.5805 -1.1973 -0.0074
29 6 2.1981 -1.1972 -0.0005
30 1 -0.3634 0.0001 -1.0277
31 1 -0.3634 -0.8900 0.5138
32 1 -0.3633 0.8900 0.5138
33 1 1.6583 2.1325 0.0004
34 1 4.1206 2.1323 -0.0010
35 1 5.9699 -1.9671 0.4394
36 1 5.9238 -1.0564 -1.8747
37 1 5.9238 0.7168 -2.0290
38 1 8.2383 -0.0520 -0.6049
39 1 10.2590 -0.1509 -1.7695
40 1 9.9562 0.1884 -4.6540
41 1 11.2211 -2.3283 -3.4771
42 1 9.6634 -2.2625 -4.3370
43 1 10.7746 -1.4811 -6.3770
44 1 11.5795 -2.9678 -5.8162
45 1 15.4563 0.6793 -7.0659
46 1 12.1320 0.8196 -5.7917
47 1 13.6621 0.5649 -4.9161
48 1 11.7873 1.3383 -3.4213
49 1 12.4500 -0.2449 -2.9474
50 1 4.1204 -2.1325 -0.0127
51 1 1.6581 -2.1325 -0.0005
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000730584657.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:31:32
Heat of formation + Delta-G solvation = -43.209151 kcal
Electronic energy + Delta-G solvation = -29715.211669 eV
Core-core repulsion = 25614.491200 eV
Total energy + Delta-G solvation = -4100.720469 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.53 seconds
Orbital eigenvalues (eV)
-40.40541 -39.75894 -37.90153 -37.22567 -34.46742 -34.19862 -33.35460 -32.04853
-31.35502 -30.21911 -29.72469 -28.97627 -26.61520 -24.87158 -23.48718 -23.00220
-22.22370 -21.85342 -21.18165 -20.50597 -19.39635 -18.18159 -17.97890 -16.79970
-16.53412 -16.14090 -15.63908 -15.40950 -15.33946 -14.84482 -14.51561 -14.41432
-14.32118 -14.10048 -13.84500 -13.80459 -13.57533 -13.50861 -13.03101 -12.86171
-12.65676 -12.60761 -12.37599 -12.29192 -12.05476 -11.58195 -11.42104 -11.35236
-11.08584 -10.81791 -10.69510 -10.64262 -10.46622 -10.24485 -10.02051 -9.99188
-9.72186 -9.51186 -9.35218 -9.16790 -8.96478 -8.56406 -8.40490 -6.65502
-5.77183 -3.19268 0.83208 0.98209 2.76837 3.28617 3.39936 3.40011
3.45506 3.46765 3.95245 4.12825 4.32974 4.43297 4.45021 4.51602
4.55608 4.61409 4.68941 4.94516 5.01911 5.15074 5.23641 5.33387
5.36845 5.42284 5.46887 5.51741 5.55164 5.64457 5.65131 5.65699
5.94006 5.95558 6.11407 6.12422 6.16720 6.33017 6.39338 6.40844
6.53917 6.55714 6.61465 6.65239 6.84127 6.94428 7.02788 7.10114
7.15881 7.35157 7.64806 7.81233 8.18913 8.47138 8.79086 9.23259
9.86586 10.43950 11.31731
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.033948 B = 0.001586 C = 0.001584
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 824.602770 B =17650.446330 C =17667.814244
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.116 4.116
2 C -0.084 4.084
3 C -0.119 4.119
4 C -0.102 4.102
5 C -0.121 4.121
6 C 0.140 3.860
7 H 0.114 0.886
8 O -0.551 6.551
9 C 0.115 3.885
10 N -0.748 5.748
11 C 0.701 3.299
12 O -0.592 6.592
13 N -0.738 5.738
14 C 0.169 3.831
15 C -0.139 4.139
16 C 0.147 3.853
17 N -0.592 5.592
18 C -0.252 4.252
19 H 0.065 0.935
20 C 0.002 3.998
21 N -0.904 5.904
22 Si 0.903 3.097
23 H -0.283 1.283
24 H -0.291 1.291
25 H -0.284 1.284
26 C 0.175 3.825
27 C -0.146 4.146
28 C -0.103 4.103
29 C -0.118 4.118
30 H 0.072 0.928
31 H 0.066 0.934
32 H 0.066 0.934
33 H 0.124 0.876
34 H 0.125 0.875
35 H 0.377 0.623
36 H 0.068 0.932
37 H 0.075 0.925
38 H 0.398 0.602
39 H 0.391 0.609
40 H 0.081 0.919
41 H 0.057 0.943
42 H 0.054 0.946
43 H 0.020 0.980
44 H 0.055 0.945
45 H 0.254 0.746
46 H 0.021 0.979
47 H 0.091 0.909
48 H 0.053 0.947
49 H 0.059 0.941
50 H 0.122 0.878
51 H 0.123 0.877
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -25.358 1.392 18.344 31.328
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.173 4.173
2 C -0.084 4.084
3 C -0.137 4.137
4 C -0.120 4.120
5 C -0.122 4.122
6 C 0.080 3.920
7 H 0.132 0.868
8 O -0.357 6.357
9 C -0.010 4.010
10 N -0.405 5.405
11 C 0.401 3.599
12 O -0.471 6.471
13 N -0.392 5.392
14 C 0.065 3.935
15 C -0.179 4.179
16 C 0.020 3.980
17 N -0.315 5.315
18 C -0.382 4.382
19 H 0.083 0.917
20 C -0.196 4.196
21 N -0.548 5.548
22 Si 0.733 3.267
23 H -0.209 1.209
24 H -0.217 1.217
25 H -0.211 1.211
26 C 0.048 3.952
27 C -0.186 4.186
28 C -0.121 4.121
29 C -0.136 4.136
30 H 0.090 0.910
31 H 0.085 0.915
32 H 0.085 0.915
33 H 0.142 0.858
34 H 0.143 0.857
35 H 0.226 0.774
36 H 0.087 0.913
37 H 0.093 0.907
38 H 0.232 0.768
39 H 0.224 0.776
40 H 0.099 0.901
41 H 0.075 0.925
42 H 0.072 0.928
43 H 0.038 0.962
44 H 0.074 0.926
45 H 0.064 0.936
46 H 0.039 0.961
47 H 0.109 0.891
48 H 0.072 0.928
49 H 0.078 0.922
50 H 0.140 0.860
51 H 0.141 0.859
Dipole moment (debyes) X Y Z Total
from point charges -25.509 1.893 17.594 31.046
hybrid contribution 1.021 -0.642 0.435 1.282
sum -24.488 1.250 18.029 30.435
Atomic orbital electron populations
1.20819 0.91092 1.02859 1.02530 1.19993 0.96239 0.93236 0.98979
1.21043 0.94066 0.97705 1.00868 1.20986 0.94314 0.97431 0.99265
1.20319 0.95670 0.94038 1.02172 1.21033 0.88777 0.91485 0.90714
0.86828 1.86620 1.76486 1.16844 1.55778 1.21782 0.79947 1.03268
0.96035 1.44987 1.06346 1.81027 1.08171 1.16013 0.82210 0.77875
0.83790 1.90923 1.67894 1.57717 1.30517 1.45536 1.04107 1.78603
1.10917 1.20908 0.91917 0.96832 0.83853 1.22386 0.99672 0.95625
1.00252 1.20878 0.87785 0.96471 0.92817 1.44079 1.01363 1.09573
1.76497 1.19154 0.89047 0.92689 1.37323 0.91716 1.25045 0.99110
0.97142 0.98333 1.70017 1.30246 1.10959 1.43574 0.86365 0.84416
0.78148 0.77805 1.20895 1.21655 1.21077 1.20736 0.99970 0.85609
0.88866 1.22545 0.94531 0.98812 1.02729 1.20863 0.94360 0.97374
0.99552 1.21012 0.93982 0.97719 1.00848 0.90968 0.91466 0.91469
0.85837 0.85682 0.77432 0.91323 0.90667 0.76766 0.77580 0.90122
0.92468 0.92769 0.96186 0.92619 0.93573 0.96110 0.89064 0.92792
0.92228 0.86038 0.85854
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -0.54 10.01 36.00 0.36 -0.18 16
2 C -0.08 -0.58 5.88 -104.62 -0.62 -1.19 16
3 C -0.12 -0.82 9.70 -39.58 -0.38 -1.21 16
4 C -0.10 -0.74 9.68 -39.59 -0.38 -1.12 16
5 C -0.12 -0.91 5.00 -104.62 -0.52 -1.43 16
6 C 0.14 1.01 3.30 -27.88 -0.09 0.92 16
7 H 0.11 0.76 8.05 -51.93 -0.42 0.34 16
8 O -0.55 -4.18 12.88 -35.23 -0.45 -4.63 16
9 C 0.11 1.10 5.32 -4.04 -0.02 1.08 16
10 N -0.75 -8.11 5.45 -65.22 -0.36 -8.46 16
11 C 0.70 10.71 8.53 -86.91 -0.74 9.97 16
12 O -0.59 -11.65 16.01 5.29 0.08 -11.56 16
13 N -0.74 -10.72 5.08 -58.63 -0.30 -11.02 16
14 C 0.17 3.03 2.42 -67.89 -0.16 2.86 16
15 C -0.14 -2.62 5.65 -26.61 -0.15 -2.77 16
16 C 0.15 3.24 6.52 -3.71 -0.02 3.22 16
17 N -0.59 -14.96 2.99 -172.32 -0.52 -15.48 16
18 C -0.25 -6.95 9.58 -15.06 -0.14 -7.10 16
19 H 0.07 1.75 7.89 -52.48 -0.41 1.34 16
20 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16
21 N -0.90 -26.18 11.19 55.49 0.62 -25.56 16
22 Si 0.90 21.64 29.59 -169.99 -5.03 16.61 16
23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16
24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16
25 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16
26 C 0.17 4.14 5.30 -3.71 -0.02 4.12 16
27 C -0.15 -2.72 5.55 -26.61 -0.15 -2.86 16
28 C -0.10 -0.73 9.33 -39.58 -0.37 -1.10 16
29 C -0.12 -0.81 9.70 -39.58 -0.38 -1.20 16
30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16
31 H 0.07 0.26 8.09 -51.93 -0.42 -0.16 16
32 H 0.07 0.26 8.09 -51.93 -0.42 -0.16 16
33 H 0.12 0.64 8.06 -52.49 -0.42 0.21 16
34 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16
35 H 0.38 1.96 7.40 45.56 0.34 2.30 16
36 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16
37 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16
38 H 0.40 3.44 8.36 -40.82 -0.34 3.09 16
39 H 0.39 4.57 8.62 -40.82 -0.35 4.22 16
40 H 0.08 1.64 7.58 -51.93 -0.39 1.25 16
41 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16
42 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16
43 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16
44 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16
45 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16
46 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16
47 H 0.09 2.39 6.07 -51.93 -0.31 2.08 16
48 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16
49 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16
50 H 0.12 0.63 6.62 -52.49 -0.35 0.29 16
51 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16
LS Contribution 411.34 15.07 6.20 6.20
Total: -1.00 -33.88 411.34 -11.34 -45.23
By element:
Atomic # 1 Polarization: 14.40 SS G_CDS: -7.70 Total: 6.69 kcal
Atomic # 6 Polarization: 5.87 SS G_CDS: -3.89 Total: 1.98 kcal
Atomic # 7 Polarization: -59.97 SS G_CDS: -0.55 Total: -60.52 kcal
Atomic # 8 Polarization: -15.83 SS G_CDS: -0.37 Total: -16.19 kcal
Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal
Total LS contribution 6.20 Total: 6.20 kcal
Total: -33.88 -11.34 -45.23 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000730584657.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 2.017 kcal
(2) G-P(sol) polarization free energy of solvation -33.885 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.868 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.341 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.226 kcal
(6) G-S(sol) free energy of system = (1) + (5) -43.209 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.53 seconds