Wall clock time and date at job start Wed Apr 1 2020 04:31:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 C 1.38238 * 120.00357 * 2 1
4 4 C 1.38228 * 119.99868 * 180.02562 * 3 2 1
5 5 C 1.38228 * 120.00526 * 0.02562 * 4 3 2
6 6 C 1.50703 * 120.00469 * 179.97438 * 5 4 3
7 7 H 1.09000 * 109.46629 * 25.00079 * 6 5 4
8 8 O 1.42893 * 109.47275 * 144.99932 * 6 5 4
9 9 C 1.53002 * 109.46933 * 265.00068 * 6 5 4
10 10 N 1.46504 * 109.46671 * 179.97438 * 9 6 5
11 11 C 1.34780 * 119.99697 * 180.02562 * 10 9 6
12 12 O 1.21588 * 119.99927 * 359.97438 * 11 10 9
13 13 N 1.34777 * 119.99762 * 179.97438 * 11 10 9
14 14 C 1.46500 * 119.99715 * 179.97438 * 13 11 10
15 15 C 1.53044 * 109.46097 * 275.02430 * 14 13 11
16 16 C 1.53189 * 109.31274 * 178.60012 * 15 14 13
17 17 N 1.46927 * 108.76435 * 54.65844 * 16 15 14
18 18 C 1.36935 * 120.63188 * 126.40602 * 17 16 15
19 19 H 1.08006 * 119.99525 * 331.81985 * 18 17 16
20 20 C 1.38806 * 120.00387 * 151.82754 * 18 17 16
21 21 N 1.31620 * 119.99808 * 343.07240 * 20 18 17
22 22 Si 1.86797 * 120.00593 * 163.07784 * 20 18 17
23 23 H 1.48507 * 109.46712 * 59.99525 * 22 20 18
24 24 H 1.48502 * 109.47360 * 179.97438 * 22 20 18
25 25 H 1.48496 * 109.46933 * 299.99807 * 22 20 18
26 26 C 1.46925 * 118.73955 * 306.38404 * 17 16 15
27 27 C 1.53037 * 109.45918 * 154.97228 * 14 13 11
28 28 C 1.38243 * 120.00028 * 0.24993 * 5 4 3
29 29 C 1.38234 * 119.99717 * 180.02562 * 2 1 3
30 30 H 1.09006 * 109.47241 * 89.99688 * 1 2 3
31 31 H 1.09000 * 109.47433 * 209.99959 * 1 2 3
32 32 H 1.09000 * 109.46696 * 330.00062 * 1 2 3
33 33 H 1.08000 * 119.99831 * 0.02562 * 3 2 1
34 34 H 1.08001 * 119.99744 * 179.97438 * 4 3 2
35 35 H 0.96700 * 114.00099 * 59.99892 * 8 6 5
36 36 H 1.08997 * 109.46995 * 299.99657 * 9 6 5
37 37 H 1.08997 * 109.47133 * 59.99850 * 9 6 5
38 38 H 0.96998 * 120.00428 * 0.02562 * 10 9 6
39 39 H 0.96998 * 120.00363 * 359.97438 * 13 11 10
40 40 H 1.09002 * 109.46159 * 34.99665 * 14 13 11
41 41 H 1.08996 * 109.49749 * 298.57190 * 15 14 13
42 42 H 1.08999 * 109.49536 * 58.66609 * 15 14 13
43 43 H 1.09000 * 109.60078 * 294.87439 * 16 15 14
44 44 H 1.08997 * 109.70321 * 174.50917 * 16 15 14
45 45 H 0.97004 * 120.00522 * 180.02562 * 21 20 18
46 46 H 1.09000 * 109.58652 * 293.81856 * 26 17 16
47 47 H 1.09000 * 109.70660 * 173.46573 * 26 17 16
48 48 H 1.09004 * 109.50025 * 301.33797 * 27 14 13
49 49 H 1.09000 * 109.49851 * 61.43438 * 27 14 13
50 50 H 1.07995 * 120.00295 * 179.72727 * 28 5 4
51 51 H 1.08000 * 120.00252 * 359.97438 * 29 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1982 1.1971 0.0000
4 6 3.5805 1.1970 -0.0005
5 6 4.2717 -0.0001 -0.0016
6 6 5.7787 -0.0002 -0.0028
7 1 6.1424 0.9310 0.4317
8 8 6.2556 -1.1041 0.7691
9 6 6.2875 -0.1253 -1.4403
10 7 7.7526 -0.1248 -1.4414
11 6 8.4256 -0.2254 -2.6048
12 8 7.8168 -0.3170 -3.6533
13 7 9.7733 -0.2244 -2.6059
14 6 10.5048 -0.3343 -3.8704
15 6 10.6511 -1.8102 -4.2482
16 6 11.3856 -1.9198 -5.5881
17 7 12.6589 -1.1933 -5.4899
18 6 13.8401 -1.8099 -5.8056
19 1 13.9397 -2.8788 -5.6874
20 6 14.9095 -1.0612 -6.2773
21 7 14.7091 0.1562 -6.7359
22 14 16.6331 -1.7811 -6.2614
23 1 16.6629 -3.0121 -7.0917
24 1 17.5894 -0.7885 -6.8141
25 1 17.0170 -2.1155 -4.8665
26 6 12.6407 0.2075 -5.0470
27 6 11.8917 0.2933 -3.7134
28 6 3.5805 -1.1973 -0.0074
29 6 2.1981 -1.1972 -0.0005
30 1 -0.3634 0.0001 -1.0277
31 1 -0.3634 -0.8900 0.5138
32 1 -0.3633 0.8900 0.5138
33 1 1.6583 2.1325 0.0004
34 1 4.1206 2.1323 -0.0010
35 1 5.9699 -1.9671 0.4394
36 1 5.9238 -1.0564 -1.8747
37 1 5.9238 0.7168 -2.0290
38 1 8.2383 -0.0520 -0.6049
39 1 10.2590 -0.1509 -1.7695
40 1 9.9562 0.1884 -4.6540
41 1 11.2211 -2.3283 -3.4771
42 1 9.6634 -2.2625 -4.3370
43 1 10.7746 -1.4811 -6.3770
44 1 11.5795 -2.9678 -5.8162
45 1 15.4563 0.6793 -7.0659
46 1 12.1320 0.8196 -5.7917
47 1 13.6621 0.5649 -4.9161
48 1 11.7873 1.3383 -3.4213
49 1 12.4500 -0.2449 -2.9474
50 1 4.1204 -2.1325 -0.0127
51 1 1.6581 -2.1325 -0.0005
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000730584657.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:31:31
Heat of formation + Delta-G solvation = -66.675739 kcal
Electronic energy + Delta-G solvation = -29716.229257 eV
Core-core repulsion = 25614.491200 eV
Total energy + Delta-G solvation = -4101.738057 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.07 seconds
Orbital eigenvalues (eV)
-41.31153 -40.62357 -39.16215 -38.22510 -36.00016 -35.30819 -33.96018 -33.73352
-31.86531 -31.79537 -31.25036 -29.97972 -27.43788 -26.56961 -24.27668 -23.89866
-23.65468 -23.29492 -21.93666 -21.53231 -21.03292 -19.44771 -18.73015 -18.48957
-17.35215 -17.16975 -16.78908 -16.35622 -16.23969 -16.01132 -15.77946 -15.40390
-15.35194 -15.26183 -15.08840 -14.75221 -14.61524 -14.40152 -14.35693 -14.27078
-14.03220 -13.49274 -13.19095 -13.10917 -12.98674 -12.97655 -12.56664 -12.53600
-12.53432 -12.22916 -12.10546 -12.02401 -11.86106 -11.82997 -11.56009 -11.42627
-11.30610 -11.11241 -10.54169 -10.33177 -9.85183 -9.73406 -9.47157 -8.69774
-7.86667 -5.32500 0.31598 0.48114 1.49813 1.51448 1.58828 1.69325
2.17852 2.53179 2.75734 3.22355 3.31078 3.43157 3.66729 3.70446
3.84761 3.87119 3.92153 4.07373 4.08939 4.10641 4.15004 4.35692
4.45591 4.47424 4.55095 4.65541 4.66535 4.77782 4.82135 4.82876
4.87205 4.89437 4.93408 5.03475 5.07599 5.17071 5.17207 5.25419
5.30613 5.42632 5.47621 5.49158 5.59686 5.61505 5.65449 5.69372
5.71203 6.04181 6.08660 6.39915 6.63924 7.14189 7.15477 7.61986
7.84926 8.38235 9.20323
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.033948 B = 0.001586 C = 0.001584
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 824.602770 B =17650.446330 C =17667.814244
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.116 4.116
2 C -0.095 4.095
3 C -0.132 4.132
4 C -0.113 4.113
5 C -0.134 4.134
6 C 0.156 3.844
7 H 0.124 0.876
8 O -0.558 6.558
9 C 0.117 3.883
10 N -0.727 5.727
11 C 0.699 3.301
12 O -0.638 6.638
13 N -0.726 5.726
14 C 0.181 3.819
15 C -0.123 4.123
16 C 0.144 3.856
17 N -0.608 5.608
18 C -0.266 4.266
19 H 0.067 0.933
20 C -0.048 4.048
21 N -0.935 5.935
22 Si 0.970 3.030
23 H -0.277 1.277
24 H -0.294 1.294
25 H -0.275 1.275
26 C 0.179 3.821
27 C -0.127 4.127
28 C -0.114 4.114
29 C -0.131 4.131
30 H 0.075 0.925
31 H 0.074 0.926
32 H 0.074 0.926
33 H 0.138 0.862
34 H 0.137 0.863
35 H 0.387 0.613
36 H 0.060 0.940
37 H 0.065 0.935
38 H 0.413 0.587
39 H 0.410 0.590
40 H 0.054 0.946
41 H 0.066 0.934
42 H 0.057 0.943
43 H 0.006 0.994
44 H 0.057 0.943
45 H 0.251 0.749
46 H -0.006 1.006
47 H 0.064 0.936
48 H 0.076 0.924
49 H 0.070 0.930
50 H 0.136 0.864
51 H 0.137 0.863
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -25.919 0.826 20.686 33.171
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.172 4.172
2 C -0.095 4.095
3 C -0.150 4.150
4 C -0.131 4.131
5 C -0.135 4.135
6 C 0.097 3.903
7 H 0.141 0.859
8 O -0.366 6.366
9 C -0.008 4.008
10 N -0.384 5.384
11 C 0.399 3.601
12 O -0.520 6.520
13 N -0.380 5.380
14 C 0.076 3.924
15 C -0.163 4.163
16 C 0.018 3.982
17 N -0.332 5.332
18 C -0.396 4.396
19 H 0.085 0.915
20 C -0.244 4.244
21 N -0.581 5.581
22 Si 0.798 3.202
23 H -0.203 1.203
24 H -0.220 1.220
25 H -0.201 1.201
26 C 0.052 3.948
27 C -0.167 4.167
28 C -0.132 4.132
29 C -0.149 4.149
30 H 0.094 0.906
31 H 0.093 0.907
32 H 0.093 0.907
33 H 0.155 0.845
34 H 0.155 0.845
35 H 0.237 0.763
36 H 0.078 0.922
37 H 0.083 0.917
38 H 0.250 0.750
39 H 0.246 0.754
40 H 0.073 0.927
41 H 0.085 0.915
42 H 0.075 0.925
43 H 0.024 0.976
44 H 0.076 0.924
45 H 0.060 0.940
46 H 0.012 0.988
47 H 0.082 0.918
48 H 0.095 0.905
49 H 0.089 0.911
50 H 0.154 0.846
51 H 0.155 0.845
Dipole moment (debyes) X Y Z Total
from point charges -26.093 1.311 20.018 32.913
hybrid contribution 1.086 -0.480 -0.321 1.230
sum -25.006 0.831 19.697 31.843
Atomic orbital electron populations
1.20854 0.89737 1.03656 1.02958 1.20329 0.97457 0.93272 0.98416
1.21313 0.94245 0.98500 1.00912 1.21239 0.94748 0.97971 0.99144
1.20397 0.95700 0.94416 1.03013 1.20856 0.88654 0.91867 0.88956
0.85885 1.86600 1.76616 1.17525 1.55877 1.21852 0.78844 1.02419
0.97666 1.44800 1.06877 1.79350 1.07403 1.16151 0.82166 0.77596
0.84188 1.90903 1.68779 1.59746 1.32556 1.45121 1.03994 1.78466
1.10447 1.20486 0.91463 0.95728 0.84762 1.22175 0.99270 0.96441
0.98424 1.20966 0.86761 0.96060 0.94389 1.44330 1.01857 1.10101
1.76877 1.19496 0.90104 0.93062 1.36947 0.91504 1.25815 1.02671
0.97591 0.98309 1.70181 1.30950 1.12260 1.44719 0.85313 0.79648
0.77258 0.78025 1.20333 1.22048 1.20125 1.20565 0.98789 0.84576
0.90832 1.22257 0.94162 1.00583 0.99709 1.21134 0.94756 0.97983
0.99280 1.21290 0.94215 0.98488 1.00908 0.90633 0.90706 0.90689
0.84463 0.84507 0.76269 0.92162 0.91695 0.75023 0.75409 0.92733
0.91550 0.92462 0.97594 0.92406 0.94014 0.98790 0.91786 0.90518
0.91087 0.84592 0.84506
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -0.92 10.01 71.24 0.71 -0.21 16
2 C -0.09 -1.19 5.88 -19.87 -0.12 -1.31 16
3 C -0.13 -1.69 9.70 22.27 0.22 -1.47 16
4 C -0.11 -1.51 9.68 22.27 0.22 -1.30 16
5 C -0.13 -1.85 5.00 -19.86 -0.10 -1.95 16
6 C 0.16 1.99 3.30 29.85 0.10 2.09 16
7 H 0.12 1.35 8.05 -2.39 -0.02 1.33 16
8 O -0.56 -7.20 12.88 -148.98 -1.92 -9.12 16
9 C 0.12 2.09 5.32 86.38 0.46 2.55 16
10 N -0.73 -14.28 5.45 -478.52 -2.61 -16.89 16
11 C 0.70 20.31 8.53 179.05 1.53 21.83 16
12 O -0.64 -24.87 16.01 -3.99 -0.06 -24.93 16
13 N -0.73 -19.53 5.08 -457.68 -2.33 -21.86 16
14 C 0.18 6.31 2.42 45.02 0.11 6.42 16
15 C -0.12 -4.51 5.65 30.67 0.17 -4.34 16
16 C 0.14 6.40 6.52 86.36 0.56 6.96 16
17 N -0.61 -31.06 2.99 -699.11 -2.09 -33.15 16
18 C -0.27 -14.72 9.58 84.03 0.81 -13.91 16
19 H 0.07 3.59 7.89 -2.91 -0.02 3.57 16
20 C -0.05 -2.70 4.92 84.86 0.42 -2.28 16
21 N -0.94 -55.36 11.19 21.65 0.24 -55.12 16
22 Si 0.97 44.61 29.59 68.60 2.03 46.64 16
23 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16
24 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16
25 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16
26 C 0.18 8.62 5.30 86.36 0.46 9.08 16
27 C -0.13 -4.58 5.55 30.67 0.17 -4.41 16
28 C -0.11 -1.48 9.33 22.27 0.21 -1.27 16
29 C -0.13 -1.67 9.70 22.27 0.22 -1.45 16
30 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16
31 H 0.07 0.47 8.09 -2.39 -0.02 0.45 16
32 H 0.07 0.47 8.09 -2.39 -0.02 0.45 16
33 H 0.14 1.25 8.06 -2.91 -0.02 1.22 16
34 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16
35 H 0.39 3.20 7.40 -74.06 -0.55 2.65 16
36 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16
37 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16
38 H 0.41 5.89 8.36 -92.71 -0.78 5.12 16
39 H 0.41 8.22 8.62 -92.71 -0.80 7.42 16
40 H 0.05 2.23 7.58 -2.39 -0.02 2.22 16
41 H 0.07 2.33 8.14 -2.39 -0.02 2.32 16
42 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16
43 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16
44 H 0.06 2.48 7.93 -2.39 -0.02 2.46 16
45 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16
46 H -0.01 -0.32 8.14 -2.39 -0.02 -0.33 16
47 H 0.06 3.43 6.07 -2.39 -0.01 3.42 16
48 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16
49 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16
50 H 0.14 1.22 6.62 -2.91 -0.02 1.20 16
51 H 0.14 1.24 8.06 -2.91 -0.02 1.22 16
Total: -1.00 -73.87 411.34 -1.77 -75.65
By element:
Atomic # 1 Polarization: 24.91 SS G_CDS: -1.17 Total: 23.74 kcal
Atomic # 6 Polarization: 8.91 SS G_CDS: 6.13 Total: 15.04 kcal
Atomic # 7 Polarization: -120.22 SS G_CDS: -6.78 Total: -127.01 kcal
Atomic # 8 Polarization: -32.07 SS G_CDS: -1.98 Total: -34.06 kcal
Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal
Total: -73.87 -1.77 -75.65 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000730584657.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 8.971 kcal
(2) G-P(sol) polarization free energy of solvation -73.873 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.902 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.774 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.646 kcal
(6) G-S(sol) free energy of system = (1) + (5) -66.676 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.08 seconds