Wall clock time and date at job start Wed Apr 1 2020 05:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38358 * 119.85554 * 2 1 4 4 C 1.37961 * 120.15031 * 179.97438 * 3 2 1 5 5 C 1.39581 * 119.84822 * 0.23411 * 4 3 2 6 6 C 1.47847 * 120.14334 * 179.74462 * 5 4 3 7 7 O 1.21553 * 119.99740 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00147 * 179.97438 * 6 5 4 9 9 N 1.40098 * 120.00315 * 180.02562 * 8 6 5 10 10 C 1.34773 * 120.00315 * 179.97438 * 9 8 6 11 11 O 1.21283 * 119.99706 * 359.97438 * 10 9 8 12 12 C 1.50694 * 120.00111 * 180.02562 * 10 9 8 13 13 N 1.46903 * 109.47203 * 187.59048 * 12 10 9 14 14 C 1.46897 * 111.00190 * 211.24749 * 13 12 10 15 15 C 1.50695 * 109.47346 * 164.21612 * 14 13 12 16 16 H 1.07997 * 120.00075 * 4.94200 * 15 14 13 17 17 C 1.37878 * 119.99967 * 184.94450 * 15 14 13 18 18 N 1.31514 * 119.99847 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00237 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.47465 * 89.99449 * 19 17 15 21 21 H 1.48499 * 109.47232 * 210.00136 * 19 17 15 22 22 H 1.48510 * 109.46895 * 329.99888 * 19 17 15 23 23 C 1.46904 * 111.00073 * 87.28742 * 13 12 10 24 24 C 1.52997 * 109.47487 * 282.12639 * 23 13 12 25 25 C 1.52992 * 109.47241 * 173.93042 * 24 23 13 26 26 C 1.53002 * 109.46954 * 293.93458 * 24 23 13 27 27 C 1.39576 * 119.71059 * 359.48734 * 5 4 3 28 28 C 1.37958 * 119.85135 * 0.53499 * 27 5 4 29 29 H 1.09002 * 109.46563 * 90.00160 * 1 2 3 30 30 H 1.08997 * 109.46802 * 210.00294 * 1 2 3 31 31 H 1.08995 * 109.47073 * 330.00854 * 1 2 3 32 32 H 1.08006 * 119.92582 * 359.97001 * 3 2 1 33 33 H 1.07993 * 120.07593 * 179.97438 * 4 3 2 34 34 H 0.97006 * 119.99641 * 0.02562 * 8 6 5 35 35 H 0.97004 * 119.99469 * 0.02562 * 9 8 6 36 36 H 1.09001 * 109.46775 * 307.58555 * 12 10 9 37 37 H 1.08996 * 109.47479 * 67.58715 * 12 10 9 38 38 H 1.09004 * 109.46908 * 284.21516 * 14 13 12 39 39 H 1.08995 * 109.47289 * 44.21074 * 14 13 12 40 40 H 0.97003 * 119.99912 * 179.97438 * 18 17 15 41 41 H 1.08999 * 109.46733 * 42.12863 * 23 13 12 42 42 H 1.08997 * 109.46956 * 162.12563 * 23 13 12 43 43 H 1.09000 * 109.46902 * 53.92579 * 24 23 13 44 44 H 1.09001 * 109.47057 * 60.00120 * 25 24 23 45 45 H 1.09004 * 109.47250 * 180.02562 * 25 24 23 46 46 H 1.09004 * 109.47134 * 299.99842 * 25 24 23 47 47 H 1.08994 * 109.47771 * 61.73675 * 26 24 23 48 48 H 1.09001 * 109.47135 * 181.73802 * 26 24 23 49 49 H 1.09008 * 109.46922 * 301.72950 * 26 24 23 50 50 H 1.08003 * 120.07340 * 180.25316 * 27 5 4 51 51 H 1.08004 * 119.92364 * 179.69956 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2000 0.0000 4 6 3.5753 1.2071 0.0005 5 6 4.2763 0.0000 -0.0039 6 6 5.7547 0.0000 -0.0090 7 8 6.3625 1.0527 -0.0090 8 7 6.4286 -1.1671 -0.0128 9 7 7.8296 -1.1672 -0.0171 10 6 8.5035 -2.3343 -0.0203 11 8 7.8971 -3.3847 -0.0190 12 6 10.0104 -2.3343 -0.0244 13 7 10.4996 -3.7070 -0.2103 14 6 11.7824 -3.9063 0.4772 15 6 12.0623 -5.3819 0.6004 16 1 11.3990 -6.0978 0.1380 17 6 13.1652 -5.8180 1.3035 18 7 13.4092 -7.1058 1.4115 19 14 14.3130 -4.5798 2.1028 20 1 13.8518 -4.2983 3.4860 21 1 15.6896 -5.1352 2.1432 22 1 14.3099 -3.3213 1.3143 23 6 10.6101 -4.0378 -1.6373 24 6 9.2210 -4.3499 -2.1976 25 6 9.3141 -4.5459 -3.7120 26 6 8.6852 -5.6282 -1.5497 27 6 3.5753 -1.2070 0.0021 28 6 2.1958 -1.1999 0.0010 29 1 -0.3632 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5137 32 1 1.6522 2.1332 -0.0005 33 1 4.1117 2.1444 0.0001 34 1 5.9436 -2.0072 -0.0124 35 1 8.3146 -0.3271 -0.0170 36 1 10.3715 -1.7065 -0.8390 37 1 10.3764 -1.9436 0.9251 38 1 12.5792 -3.4320 -0.0957 39 1 11.7350 -3.4613 1.4710 40 1 14.1854 -7.4126 1.9058 41 1 11.0367 -3.1908 -2.1746 42 1 11.2551 -4.9079 -1.7597 43 1 8.5467 -3.5218 -1.9791 44 1 9.9884 -5.3740 -3.9304 45 1 8.3244 -4.7678 -4.1112 46 1 9.6958 -3.6351 -4.1735 47 1 8.5897 -5.4782 -0.4744 48 1 7.7090 -5.8676 -1.9713 49 1 9.3753 -6.4498 -1.7421 50 1 4.1118 -2.1444 0.0028 51 1 1.6522 -2.1332 0.0007 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755675043.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:41 Heat of formation + Delta-G solvation = -7.719598 kcal Electronic energy + Delta-G solvation = -30360.273622 eV Core-core repulsion = 26261.092095 eV Total energy + Delta-G solvation = -4099.181527 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.76612 -39.71159 -38.67683 -37.04792 -35.24386 -34.09331 -33.51411 -32.44273 -31.74060 -31.05183 -28.68798 -27.66480 -26.70441 -26.40618 -24.14531 -23.15093 -22.95189 -21.45021 -20.92975 -20.37375 -19.30676 -18.34792 -17.88140 -16.86432 -16.39180 -16.08332 -15.76021 -15.65420 -15.33330 -15.08239 -14.53560 -14.28325 -14.23592 -14.08324 -13.97246 -13.93470 -13.74186 -13.55630 -12.95577 -12.71258 -12.59710 -12.41796 -12.37577 -12.06597 -11.92454 -11.73374 -11.46179 -11.45855 -11.22142 -11.03365 -10.88431 -10.61155 -10.48157 -10.27431 -10.02408 -9.94488 -9.79344 -9.65749 -9.43684 -9.27658 -9.20585 -8.57344 -8.37218 -7.45864 -6.04639 -4.01811 0.39706 0.93963 1.70260 2.38259 2.83162 3.27086 3.34510 3.35166 3.44463 3.81090 4.25591 4.31430 4.40632 4.43775 4.54780 4.69283 4.80128 4.90463 5.01921 5.11435 5.19865 5.26788 5.27029 5.39219 5.43503 5.53334 5.55903 5.56968 5.58149 5.77414 5.83931 5.89433 5.95677 6.08364 6.17089 6.25188 6.38811 6.42948 6.48284 6.54865 6.59976 6.65099 6.72861 6.74836 6.89394 7.04857 7.36315 7.42068 7.56643 7.78299 7.83627 7.94561 8.43918 8.63597 9.07360 9.56096 11.08407 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016081 B = 0.002157 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.802522 B =12975.539580 C =13601.920102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.059 4.059 3 C -0.130 4.130 4 C -0.051 4.051 5 C -0.133 4.133 6 C 0.558 3.442 7 O -0.542 6.542 8 N -0.514 5.514 9 N -0.535 5.535 10 C 0.511 3.489 11 O -0.497 6.497 12 C 0.044 3.956 13 N -0.504 5.504 14 C 0.166 3.834 15 C -0.505 4.505 16 H 0.084 0.916 17 C 0.068 3.932 18 N -0.898 5.898 19 Si 0.873 3.127 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.269 1.269 23 C 0.066 3.934 24 C -0.088 4.088 25 C -0.147 4.147 26 C -0.124 4.124 27 C -0.080 4.080 28 C -0.126 4.126 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.131 0.869 33 H 0.138 0.862 34 H 0.430 0.570 35 H 0.428 0.572 36 H 0.064 0.936 37 H 0.102 0.898 38 H -0.009 1.009 39 H 0.025 0.975 40 H 0.263 0.737 41 H 0.020 0.980 42 H 0.090 0.910 43 H 0.063 0.937 44 H 0.054 0.946 45 H 0.047 0.953 46 H 0.043 0.957 47 H 0.082 0.918 48 H 0.028 0.972 49 H 0.042 0.958 50 H 0.129 0.871 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.830 16.154 -5.343 28.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.059 4.059 3 C -0.148 4.148 4 C -0.071 4.071 5 C -0.137 4.137 6 C 0.346 3.654 7 O -0.420 6.420 8 N -0.261 5.261 9 N -0.288 5.288 10 C 0.298 3.702 11 O -0.368 6.368 12 C -0.090 4.090 13 N -0.228 5.228 14 C 0.040 3.960 15 C -0.544 4.544 16 H 0.102 0.898 17 C -0.133 4.133 18 N -0.537 5.537 19 Si 0.701 3.299 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.194 1.194 23 C -0.062 4.062 24 C -0.107 4.107 25 C -0.205 4.205 26 C -0.181 4.181 27 C -0.099 4.099 28 C -0.144 4.144 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.148 0.852 33 H 0.156 0.844 34 H 0.274 0.726 35 H 0.269 0.731 36 H 0.081 0.919 37 H 0.120 0.880 38 H 0.009 0.991 39 H 0.043 0.957 40 H 0.073 0.927 41 H 0.038 0.962 42 H 0.109 0.891 43 H 0.081 0.919 44 H 0.073 0.927 45 H 0.066 0.934 46 H 0.062 0.938 47 H 0.101 0.899 48 H 0.047 0.953 49 H 0.061 0.939 50 H 0.147 0.853 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -22.988 15.602 -5.043 28.237 hybrid contribution 1.320 1.112 0.177 1.735 sum -21.668 16.714 -4.866 27.795 Atomic orbital electron populations 1.20887 0.90716 1.03276 1.02798 1.20209 0.96524 0.93148 0.96047 1.21052 0.93716 0.97980 1.02030 1.21243 0.93865 0.97553 0.94388 1.19623 0.91183 0.94861 1.08069 1.18335 0.87314 0.82654 0.77129 1.90787 1.69484 1.30688 1.51016 1.44692 0.96081 1.10203 1.75153 1.45274 0.93606 1.11139 1.78739 1.21478 0.90837 0.81967 0.75957 1.90717 1.69304 1.30158 1.46601 1.21939 0.89399 0.94284 1.03372 1.61412 1.31325 1.17936 1.12085 1.20266 0.84033 0.98880 0.92825 1.20999 1.09828 0.89902 1.33622 0.89751 1.24890 0.97415 0.94975 0.96054 1.69889 1.28406 1.13250 1.42165 0.86905 0.80688 0.82027 0.80318 1.20206 1.21244 1.19357 1.22269 0.96723 1.00578 0.86621 1.21146 0.96857 0.99643 0.93022 1.21864 1.00952 1.00978 0.96701 1.21595 0.97790 0.95583 1.03176 1.21378 0.94816 0.96991 0.96674 1.21020 0.93733 0.98078 1.01600 0.90617 0.91083 0.91148 0.85151 0.84415 0.72642 0.73066 0.91858 0.88024 0.99150 0.95718 0.92679 0.96208 0.89120 0.91864 0.92734 0.93379 0.93752 0.89872 0.95322 0.93892 0.85303 0.85087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.48 10.01 36.01 0.36 -0.12 16 2 C -0.06 -0.38 5.89 -104.53 -0.62 -1.00 16 3 C -0.13 -0.90 9.68 -39.64 -0.38 -1.28 16 4 C -0.05 -0.45 9.60 -39.18 -0.38 -0.83 16 5 C -0.13 -1.30 5.87 -104.97 -0.62 -1.92 16 6 C 0.56 6.70 7.89 -12.33 -0.10 6.60 16 7 O -0.54 -7.90 16.19 5.32 0.09 -7.81 16 8 N -0.51 -6.07 6.21 30.53 0.19 -5.88 16 9 N -0.54 -6.73 6.26 31.22 0.20 -6.54 16 10 C 0.51 7.68 6.57 -10.99 -0.07 7.61 16 11 O -0.50 -8.81 12.00 5.55 0.07 -8.74 16 12 C 0.04 0.68 5.56 -4.98 -0.03 0.65 16 13 N -0.50 -10.00 3.43 -237.53 -0.81 -10.81 16 14 C 0.17 3.81 3.75 -4.98 -0.02 3.79 16 15 C -0.51 -13.97 8.96 -34.44 -0.31 -14.28 16 16 H 0.08 2.57 7.80 -52.49 -0.41 2.16 16 17 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 18 N -0.90 -27.21 13.96 55.43 0.77 -26.43 16 19 Si 0.87 20.98 27.37 -169.99 -4.65 16.32 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.27 -6.13 6.69 56.52 0.38 -5.75 16 23 C 0.07 1.23 4.18 -3.82 -0.02 1.21 16 24 C -0.09 -1.48 2.39 -90.62 -0.22 -1.70 16 25 C -0.15 -2.12 9.19 37.15 0.34 -1.78 16 26 C -0.12 -2.30 8.45 37.16 0.31 -1.99 16 27 C -0.08 -0.65 9.54 -39.19 -0.37 -1.02 16 28 C -0.13 -0.87 9.68 -39.64 -0.38 -1.26 16 29 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.24 8.08 -51.93 -0.42 -0.18 16 31 H 0.07 0.23 8.08 -51.93 -0.42 -0.19 16 32 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 33 H 0.14 1.19 7.65 -52.49 -0.40 0.79 16 34 H 0.43 4.66 6.04 -182.59 -1.10 3.56 16 35 H 0.43 4.80 8.00 -182.60 -1.46 3.34 16 36 H 0.06 0.83 7.48 -51.93 -0.39 0.44 16 37 H 0.10 1.44 7.45 -51.93 -0.39 1.05 16 38 H -0.01 -0.21 7.45 -51.93 -0.39 -0.60 16 39 H 0.02 0.56 6.77 -51.93 -0.35 0.21 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.02 0.34 7.57 -51.93 -0.39 -0.06 16 42 H 0.09 1.93 6.95 -51.93 -0.36 1.57 16 43 H 0.06 1.07 5.07 -51.93 -0.26 0.81 16 44 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.08 1.77 6.37 -51.93 -0.33 1.44 16 48 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.04 0.83 8.14 -51.92 -0.42 0.40 16 50 H 0.13 0.88 6.41 -52.48 -0.34 0.54 16 51 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 LS Contribution 409.44 15.07 6.17 6.17 Total: -1.00 -33.58 409.44 -10.53 -44.10 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -9.95 Total: 5.09 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: -2.59 Total: -5.47 kcal Atomic # 7 Polarization: -50.01 SS G_CDS: 0.34 Total: -49.66 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: 0.15 Total: -16.55 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.65 Total: 16.32 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.58 -10.53 -44.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755675043.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.381 kcal (2) G-P(sol) polarization free energy of solvation -33.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds