Wall clock time and date at job start Wed Apr 1 2020 05:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38358 * 119.85554 * 2 1 4 4 C 1.37961 * 120.15031 * 179.97438 * 3 2 1 5 5 C 1.39581 * 119.84822 * 0.23411 * 4 3 2 6 6 C 1.47847 * 120.14334 * 179.74462 * 5 4 3 7 7 O 1.21553 * 119.99740 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00147 * 179.97438 * 6 5 4 9 9 N 1.40098 * 120.00315 * 180.02562 * 8 6 5 10 10 C 1.34773 * 120.00315 * 179.97438 * 9 8 6 11 11 O 1.21283 * 119.99706 * 359.97438 * 10 9 8 12 12 C 1.50694 * 120.00111 * 180.02562 * 10 9 8 13 13 N 1.46903 * 109.47203 * 187.59048 * 12 10 9 14 14 C 1.46897 * 111.00190 * 211.24749 * 13 12 10 15 15 C 1.50695 * 109.47346 * 164.21612 * 14 13 12 16 16 H 1.07997 * 120.00075 * 4.94200 * 15 14 13 17 17 C 1.37878 * 119.99967 * 184.94450 * 15 14 13 18 18 N 1.31514 * 119.99847 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00237 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.47465 * 89.99449 * 19 17 15 21 21 H 1.48499 * 109.47232 * 210.00136 * 19 17 15 22 22 H 1.48510 * 109.46895 * 329.99888 * 19 17 15 23 23 C 1.46904 * 111.00073 * 87.28742 * 13 12 10 24 24 C 1.52997 * 109.47487 * 282.12639 * 23 13 12 25 25 C 1.52992 * 109.47241 * 173.93042 * 24 23 13 26 26 C 1.53002 * 109.46954 * 293.93458 * 24 23 13 27 27 C 1.39576 * 119.71059 * 359.48734 * 5 4 3 28 28 C 1.37958 * 119.85135 * 0.53499 * 27 5 4 29 29 H 1.09002 * 109.46563 * 90.00160 * 1 2 3 30 30 H 1.08997 * 109.46802 * 210.00294 * 1 2 3 31 31 H 1.08995 * 109.47073 * 330.00854 * 1 2 3 32 32 H 1.08006 * 119.92582 * 359.97001 * 3 2 1 33 33 H 1.07993 * 120.07593 * 179.97438 * 4 3 2 34 34 H 0.97006 * 119.99641 * 0.02562 * 8 6 5 35 35 H 0.97004 * 119.99469 * 0.02562 * 9 8 6 36 36 H 1.09001 * 109.46775 * 307.58555 * 12 10 9 37 37 H 1.08996 * 109.47479 * 67.58715 * 12 10 9 38 38 H 1.09004 * 109.46908 * 284.21516 * 14 13 12 39 39 H 1.08995 * 109.47289 * 44.21074 * 14 13 12 40 40 H 0.97003 * 119.99912 * 179.97438 * 18 17 15 41 41 H 1.08999 * 109.46733 * 42.12863 * 23 13 12 42 42 H 1.08997 * 109.46956 * 162.12563 * 23 13 12 43 43 H 1.09000 * 109.46902 * 53.92579 * 24 23 13 44 44 H 1.09001 * 109.47057 * 60.00120 * 25 24 23 45 45 H 1.09004 * 109.47250 * 180.02562 * 25 24 23 46 46 H 1.09004 * 109.47134 * 299.99842 * 25 24 23 47 47 H 1.08994 * 109.47771 * 61.73675 * 26 24 23 48 48 H 1.09001 * 109.47135 * 181.73802 * 26 24 23 49 49 H 1.09008 * 109.46922 * 301.72950 * 26 24 23 50 50 H 1.08003 * 120.07340 * 180.25316 * 27 5 4 51 51 H 1.08004 * 119.92364 * 179.69956 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2000 0.0000 4 6 3.5753 1.2071 0.0005 5 6 4.2763 0.0000 -0.0039 6 6 5.7547 0.0000 -0.0090 7 8 6.3625 1.0527 -0.0090 8 7 6.4286 -1.1671 -0.0128 9 7 7.8296 -1.1672 -0.0171 10 6 8.5035 -2.3343 -0.0203 11 8 7.8971 -3.3847 -0.0190 12 6 10.0104 -2.3343 -0.0244 13 7 10.4996 -3.7070 -0.2103 14 6 11.7824 -3.9063 0.4772 15 6 12.0623 -5.3819 0.6004 16 1 11.3990 -6.0978 0.1380 17 6 13.1652 -5.8180 1.3035 18 7 13.4092 -7.1058 1.4115 19 14 14.3130 -4.5798 2.1028 20 1 13.8518 -4.2983 3.4860 21 1 15.6896 -5.1352 2.1432 22 1 14.3099 -3.3213 1.3143 23 6 10.6101 -4.0378 -1.6373 24 6 9.2210 -4.3499 -2.1976 25 6 9.3141 -4.5459 -3.7120 26 6 8.6852 -5.6282 -1.5497 27 6 3.5753 -1.2070 0.0021 28 6 2.1958 -1.1999 0.0010 29 1 -0.3632 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5137 32 1 1.6522 2.1332 -0.0005 33 1 4.1117 2.1444 0.0001 34 1 5.9436 -2.0072 -0.0124 35 1 8.3146 -0.3271 -0.0170 36 1 10.3715 -1.7065 -0.8390 37 1 10.3764 -1.9436 0.9251 38 1 12.5792 -3.4320 -0.0957 39 1 11.7350 -3.4613 1.4710 40 1 14.1854 -7.4126 1.9058 41 1 11.0367 -3.1908 -2.1746 42 1 11.2551 -4.9079 -1.7597 43 1 8.5467 -3.5218 -1.9791 44 1 9.9884 -5.3740 -3.9304 45 1 8.3244 -4.7678 -4.1112 46 1 9.6958 -3.6351 -4.1735 47 1 8.5897 -5.4782 -0.4744 48 1 7.7090 -5.8676 -1.9713 49 1 9.3753 -6.4498 -1.7421 50 1 4.1118 -2.1444 0.0028 51 1 1.6522 -2.1332 0.0007 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755675043.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:39 Heat of formation + Delta-G solvation = -30.090097 kcal Electronic energy + Delta-G solvation = -30361.243679 eV Core-core repulsion = 26261.092095 eV Total energy + Delta-G solvation = -4100.151585 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 2.68 seconds Orbital eigenvalues (eV) -41.70190 -40.72640 -39.53339 -38.43484 -36.35361 -35.60582 -34.45877 -34.13562 -32.59330 -31.81109 -30.28373 -28.58624 -27.84769 -27.80001 -25.76089 -23.83807 -23.66182 -22.73150 -22.18958 -21.45601 -20.69691 -19.35444 -18.94657 -18.71977 -17.52678 -17.39225 -16.58676 -16.40545 -16.24609 -16.19021 -15.88110 -15.76697 -15.34467 -15.28857 -15.11915 -14.73309 -14.56045 -14.43725 -14.39779 -14.22746 -13.86941 -13.58265 -13.11192 -13.02596 -12.93968 -12.85790 -12.71894 -12.60356 -12.49701 -12.41441 -12.34069 -11.98012 -11.92795 -11.63188 -11.52448 -11.46084 -11.39858 -11.16627 -10.90674 -10.73056 -10.00555 -9.83155 -9.37527 -8.97378 -8.22481 -6.25137 -0.25978 0.37534 0.70781 1.38477 1.39886 1.44306 1.49947 1.80280 2.38348 2.79665 2.80147 3.09833 3.25431 3.48335 3.79025 3.88083 3.95102 4.01450 4.05381 4.16636 4.28270 4.34078 4.37264 4.39422 4.44296 4.62000 4.71882 4.77400 4.79270 4.87276 4.87454 4.89426 5.03889 5.05045 5.05867 5.14745 5.21896 5.22791 5.25092 5.32369 5.34017 5.50106 5.57035 5.57926 5.61786 5.69249 5.81003 5.91255 6.01802 6.32629 6.48555 6.67245 6.81482 6.82846 7.34010 7.37259 8.94445 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016081 B = 0.002157 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.802522 B =12975.539580 C =13601.920102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.056 4.056 3 C -0.131 4.131 4 C -0.063 4.063 5 C -0.155 4.155 6 C 0.560 3.440 7 O -0.572 6.572 8 N -0.513 5.513 9 N -0.525 5.525 10 C 0.516 3.484 11 O -0.529 6.529 12 C 0.040 3.960 13 N -0.526 5.526 14 C 0.175 3.825 15 C -0.508 4.508 16 H 0.035 0.965 17 C 0.003 3.997 18 N -0.951 5.951 19 Si 0.948 3.052 20 H -0.268 1.268 21 H -0.287 1.287 22 H -0.242 1.242 23 C 0.069 3.931 24 C -0.080 4.080 25 C -0.142 4.142 26 C -0.115 4.115 27 C -0.083 4.083 28 C -0.132 4.132 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.153 0.847 33 H 0.132 0.868 34 H 0.434 0.566 35 H 0.436 0.564 36 H 0.096 0.904 37 H 0.118 0.882 38 H -0.001 1.001 39 H 0.035 0.965 40 H 0.264 0.736 41 H 0.044 0.956 42 H 0.052 0.948 43 H 0.069 0.931 44 H 0.046 0.954 45 H 0.062 0.938 46 H 0.062 0.938 47 H 0.051 0.949 48 H 0.045 0.955 49 H 0.020 0.980 50 H 0.136 0.864 51 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.388 19.059 -5.726 31.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.056 4.056 3 C -0.149 4.149 4 C -0.082 4.082 5 C -0.159 4.159 6 C 0.350 3.650 7 O -0.452 6.452 8 N -0.260 5.260 9 N -0.276 5.276 10 C 0.303 3.697 11 O -0.403 6.403 12 C -0.093 4.093 13 N -0.250 5.250 14 C 0.048 3.952 15 C -0.547 4.547 16 H 0.053 0.947 17 C -0.194 4.194 18 N -0.593 5.593 19 Si 0.772 3.228 20 H -0.194 1.194 21 H -0.213 1.213 22 H -0.165 1.165 23 C -0.058 4.058 24 C -0.099 4.099 25 C -0.200 4.200 26 C -0.173 4.173 27 C -0.102 4.102 28 C -0.150 4.150 29 H 0.104 0.896 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.171 0.829 33 H 0.150 0.850 34 H 0.279 0.721 35 H 0.279 0.721 36 H 0.114 0.886 37 H 0.136 0.864 38 H 0.017 0.983 39 H 0.053 0.947 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.071 0.929 43 H 0.088 0.912 44 H 0.066 0.934 45 H 0.081 0.919 46 H 0.081 0.919 47 H 0.071 0.929 48 H 0.064 0.936 49 H 0.039 0.961 50 H 0.154 0.846 51 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -24.577 18.549 -5.444 31.269 hybrid contribution 1.615 0.175 0.260 1.645 sum -22.963 18.724 -5.184 30.079 Atomic orbital electron populations 1.20958 0.88690 1.04288 1.03684 1.20586 0.98026 0.92750 0.94254 1.21326 0.92980 0.99325 1.01266 1.21341 0.94849 0.97053 0.94966 1.19568 0.89791 0.96024 1.10530 1.18734 0.88189 0.82030 0.76062 1.90760 1.70261 1.31603 1.52569 1.44796 0.95522 1.10569 1.75141 1.45045 0.94246 1.10802 1.77520 1.21314 0.90759 0.81983 0.75649 1.90722 1.69815 1.31358 1.48374 1.22031 0.89583 0.92127 1.05518 1.61183 1.29806 1.21435 1.12586 1.20015 0.85917 0.95390 0.93841 1.21252 1.08838 0.92037 1.32572 0.94663 1.25882 0.99495 0.97085 0.96909 1.70072 1.29479 1.15895 1.43822 0.85705 0.77629 0.79945 0.79539 1.19351 1.21326 1.16531 1.22213 0.97199 0.99854 0.86578 1.21080 0.95712 0.98565 0.94544 1.21813 1.01828 1.01689 0.94642 1.21471 0.98255 0.96054 1.01485 1.21517 0.95558 0.96667 0.96470 1.21332 0.93324 0.99308 1.00985 0.89628 0.90211 0.90089 0.82911 0.84982 0.72143 0.72108 0.88640 0.86403 0.98295 0.94726 0.92674 0.93844 0.92912 0.91242 0.93441 0.91941 0.91878 0.92947 0.93610 0.96070 0.84578 0.83048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.60 10.01 71.24 0.71 0.12 16 2 C -0.06 -0.59 5.89 -19.81 -0.12 -0.71 16 3 C -0.13 -1.57 9.68 22.23 0.22 -1.35 16 4 C -0.06 -1.06 9.60 22.53 0.22 -0.85 16 5 C -0.15 -2.94 5.87 -20.09 -0.12 -3.06 16 6 C 0.56 13.22 7.89 86.79 0.68 13.90 16 7 O -0.57 -16.51 16.19 -3.88 -0.06 -16.57 16 8 N -0.51 -11.70 6.21 -175.60 -1.09 -12.79 16 9 N -0.52 -12.45 6.26 -173.54 -1.09 -13.53 16 10 C 0.52 14.83 6.57 87.66 0.58 15.40 16 11 O -0.53 -18.61 12.00 -3.04 -0.04 -18.65 16 12 C 0.04 1.15 5.56 85.55 0.48 1.63 16 13 N -0.53 -20.67 3.43 -905.40 -3.10 -23.77 16 14 C 0.17 7.92 3.75 85.56 0.32 8.24 16 15 C -0.51 -29.11 8.96 25.60 0.23 -28.88 16 16 H 0.04 2.30 7.80 -2.91 -0.02 2.28 16 17 C 0.00 0.16 5.47 84.65 0.46 0.63 16 18 N -0.95 -59.97 13.96 21.45 0.30 -59.67 16 19 Si 0.95 43.17 27.37 68.60 1.88 45.05 16 20 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 21 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 22 H -0.24 -9.90 6.69 99.48 0.67 -9.23 16 23 C 0.07 2.57 4.18 86.30 0.36 2.93 16 24 C -0.08 -2.67 2.39 -10.80 -0.03 -2.69 16 25 C -0.14 -3.87 9.19 71.98 0.66 -3.21 16 26 C -0.12 -4.42 8.45 71.98 0.61 -3.81 16 27 C -0.08 -1.26 9.54 22.53 0.21 -1.04 16 28 C -0.13 -1.55 9.68 22.23 0.22 -1.33 16 29 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.08 0.29 8.08 -2.39 -0.02 0.27 16 31 H 0.08 0.26 8.08 -2.39 -0.02 0.24 16 32 H 0.15 1.05 8.06 -2.91 -0.02 1.03 16 33 H 0.13 2.29 7.65 -2.91 -0.02 2.27 16 34 H 0.43 9.16 6.04 -213.31 -1.29 7.87 16 35 H 0.44 9.01 8.00 -213.32 -1.71 7.31 16 36 H 0.10 2.15 7.48 -2.39 -0.02 2.14 16 37 H 0.12 3.00 7.45 -2.39 -0.02 2.99 16 38 H 0.00 -0.03 7.45 -2.39 -0.02 -0.04 16 39 H 0.03 1.51 6.77 -2.39 -0.02 1.49 16 40 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 41 H 0.04 1.38 7.57 -2.39 -0.02 1.36 16 42 H 0.05 2.34 6.95 -2.39 -0.02 2.32 16 43 H 0.07 2.26 5.07 -2.39 -0.01 2.25 16 44 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 46 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 47 H 0.05 2.33 6.37 -2.39 -0.02 2.31 16 48 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 49 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 50 H 0.14 1.74 6.41 -2.91 -0.02 1.72 16 51 H 0.15 1.10 8.06 -2.91 -0.02 1.08 16 Total: -1.00 -76.45 409.44 0.41 -76.04 By element: Atomic # 1 Polarization: 30.06 SS G_CDS: -2.08 Total: 27.98 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: 5.69 Total: -4.09 kcal Atomic # 7 Polarization: -104.78 SS G_CDS: -4.98 Total: -109.76 kcal Atomic # 8 Polarization: -35.12 SS G_CDS: -0.10 Total: -35.22 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 1.88 Total: 45.05 kcal Total: -76.45 0.41 -76.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755675043.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.952 kcal (2) G-P(sol) polarization free energy of solvation -76.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.69 seconds