Wall clock time and date at job start Wed Apr 1 2020 05:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38186 * 119.96000 * 2 1 4 4 C 1.38131 * 120.14444 * 180.23076 * 3 2 1 5 5 C 1.38993 * 120.06180 * 359.49454 * 4 3 2 6 6 N 1.39674 * 120.03940 * 180.23461 * 5 4 3 7 7 C 1.46502 * 119.99684 * 359.97438 * 6 5 4 8 8 C 1.50696 * 109.46862 * 180.02562 * 7 6 5 9 9 O 1.21290 * 120.00125 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00099 * 180.02562 * 8 7 6 11 11 C 1.46503 * 120.00360 * 179.97438 * 10 8 7 12 12 C 1.50693 * 109.47316 * 180.02562 * 11 10 8 13 13 H 1.08000 * 120.00443 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99841 * 180.02562 * 12 11 10 15 15 N 1.31509 * 120.00238 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99934 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47380 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47448 * 119.99548 * 16 14 12 19 19 H 1.48497 * 109.47115 * 239.99598 * 16 14 12 20 20 C 1.38763 * 119.92295 * 0.24860 * 5 4 3 21 21 C 1.38757 * 119.85586 * 0.02562 * 20 5 4 22 22 N 1.39922 * 120.03527 * 180.02562 * 21 20 5 23 23 C 1.34778 * 119.99524 * 325.27427 * 22 21 20 24 24 O 1.21280 * 120.00156 * 4.50173 * 23 22 21 25 25 C 1.50710 * 119.99736 * 184.49993 * 23 22 21 26 26 C 1.52999 * 109.46977 * 179.97438 * 25 23 22 27 27 C 1.52993 * 109.47081 * 300.00161 * 25 23 22 28 28 C 1.53001 * 109.47002 * 60.00166 * 25 23 22 29 29 H 1.08997 * 109.47246 * 270.27706 * 1 2 3 30 30 H 1.09003 * 109.47054 * 30.27621 * 1 2 3 31 31 H 1.08994 * 109.47095 * 150.27633 * 1 2 3 32 32 H 1.08000 * 119.93114 * 359.97438 * 3 2 1 33 33 H 1.07995 * 119.97351 * 179.76217 * 4 3 2 34 34 H 0.96991 * 119.99982 * 179.97438 * 6 5 4 35 35 H 1.09004 * 109.47085 * 300.00048 * 7 6 5 36 36 H 1.08995 * 109.47273 * 60.00375 * 7 6 5 37 37 H 0.96999 * 120.00081 * 359.97438 * 10 8 7 38 38 H 1.08996 * 109.47058 * 300.00070 * 11 10 8 39 39 H 1.08998 * 109.46768 * 59.99386 * 11 10 8 40 40 H 0.97000 * 120.00487 * 180.02562 * 15 14 12 41 41 H 1.07993 * 120.07322 * 179.97438 * 20 5 4 42 42 H 0.96994 * 120.00240 * 145.27081 * 22 21 20 43 43 H 1.09003 * 109.47015 * 60.00384 * 26 25 23 44 44 H 1.09001 * 109.46919 * 179.97438 * 26 25 23 45 45 H 1.09000 * 109.47370 * 300.00435 * 26 25 23 46 46 H 1.08998 * 109.47379 * 59.99911 * 27 25 23 47 47 H 1.09001 * 109.47256 * 180.02562 * 27 25 23 48 48 H 1.09003 * 109.47228 * 299.99809 * 27 25 23 49 49 H 1.09000 * 109.47461 * 59.99537 * 28 25 23 50 50 H 1.09001 * 109.46884 * 180.02562 * 28 25 23 51 51 H 1.08998 * 109.46977 * 299.99794 * 28 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1972 0.0000 4 6 3.5784 1.2017 -0.0048 5 6 4.2786 0.0010 0.0009 6 7 5.6753 0.0060 0.0010 7 6 6.4031 1.2775 -0.0055 8 6 7.8857 1.0075 -0.0046 9 8 8.2942 -0.1345 0.0014 10 7 8.7578 2.0350 -0.0095 11 6 10.1991 1.7727 -0.0081 12 6 10.9478 3.0804 -0.0137 13 1 10.4045 4.0138 -0.0183 14 6 12.3266 3.0854 -0.0140 15 7 12.9883 1.9490 -0.0088 16 14 13.2547 4.7066 -0.0216 17 1 12.2856 5.8318 -0.0272 18 1 14.1083 4.7940 1.1904 19 1 14.1080 4.7827 -1.2346 20 6 3.5883 -1.2028 0.0063 21 6 2.2007 -1.2034 0.0054 22 7 1.5009 -2.4151 0.0113 23 6 1.9952 -3.4819 -0.6476 24 8 3.0845 -3.4165 -1.1769 25 6 1.1942 -4.7560 -0.7268 26 6 1.9762 -5.8013 -1.5247 27 6 0.9327 -5.2826 0.6857 28 6 -0.1398 -4.4774 -1.4223 29 1 -0.3633 0.0050 1.0276 30 1 -0.3633 0.8875 -0.5181 31 1 -0.3633 -0.8924 -0.5095 32 1 1.6553 2.1315 -0.0004 33 1 4.1149 2.1389 -0.0087 34 1 6.1633 -0.8321 0.0054 35 1 6.1377 1.8435 -0.8985 36 1 6.1377 1.8527 0.8814 37 1 8.4311 2.9484 -0.0139 38 1 10.4644 1.2064 0.8846 39 1 10.4646 1.1977 -0.8952 40 1 13.9583 1.9524 -0.0087 41 1 4.1299 -2.1371 0.0104 42 1 0.6603 -2.4873 0.4897 43 1 2.9268 -5.9999 -1.0296 44 1 1.3971 -6.7230 -1.5816 45 1 2.1622 -5.4259 -2.5310 46 1 0.3754 -4.5378 1.2538 47 1 0.3538 -6.2044 0.6285 48 1 1.8831 -5.4811 1.1812 49 1 0.0464 -4.1022 -2.4286 50 1 -0.7193 -5.3989 -1.4791 51 1 -0.6971 -3.7326 -0.8542 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759776782.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:12 Heat of formation + Delta-G solvation = -63.817687 kcal Electronic energy + Delta-G solvation = -29657.738735 eV Core-core repulsion = 25556.124613 eV Total energy + Delta-G solvation = -4101.614123 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.07694 -39.47722 -38.76776 -36.25101 -35.94784 -34.41515 -34.11340 -32.42756 -31.65937 -29.89939 -28.45225 -27.86255 -27.55217 -26.71656 -25.02085 -24.26680 -22.60634 -22.27146 -20.76787 -19.89221 -19.62599 -18.17236 -17.30089 -17.05601 -16.15752 -15.99553 -15.64263 -15.34747 -15.28453 -15.18148 -14.78219 -14.64419 -14.37454 -14.22729 -13.94710 -13.70215 -13.59637 -13.38696 -13.31269 -12.85668 -12.74334 -12.66852 -12.40179 -12.28409 -12.19755 -12.16167 -12.00912 -11.71507 -11.58239 -11.44366 -11.41248 -11.34994 -10.99505 -10.94106 -10.62451 -10.36245 -9.80749 -9.70079 -9.43368 -9.24897 -8.79616 -8.29762 -7.99648 -7.25657 -6.20322 -4.27748 1.31896 1.56985 2.39710 2.76091 3.19021 3.21752 3.28285 3.31286 3.39552 3.84767 4.08607 4.14971 4.27591 4.33937 4.39239 4.71895 4.81016 4.92930 5.03060 5.11884 5.13662 5.16006 5.21096 5.25016 5.26518 5.34448 5.39430 5.41945 5.45016 5.45296 5.46734 5.48871 5.59059 5.71085 5.72550 5.75002 5.83585 5.92320 6.21514 6.24130 6.45675 6.52547 6.87373 7.16857 7.21250 7.30117 7.41819 7.45282 7.61101 7.86226 7.90126 7.92678 8.50714 8.69952 8.95914 9.38808 10.89885 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018420 B = 0.001773 C = 0.001642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.681152 B =15790.017731 C =17052.705832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.181 4.181 3 C -0.053 4.053 4 C -0.213 4.213 5 C 0.238 3.762 6 N -0.728 5.728 7 C 0.104 3.896 8 C 0.493 3.507 9 O -0.552 6.552 10 N -0.706 5.706 11 C 0.249 3.751 12 C -0.545 4.545 13 H 0.065 0.935 14 C 0.063 3.937 15 N -0.885 5.885 16 Si 0.905 3.095 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.282 1.282 20 C -0.195 4.195 21 C 0.188 3.812 22 N -0.669 5.669 23 C 0.518 3.482 24 O -0.510 6.510 25 C -0.085 4.085 26 C -0.130 4.130 27 C -0.143 4.143 28 C -0.141 4.141 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.412 0.588 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.393 0.607 38 H 0.028 0.972 39 H 0.028 0.972 40 H 0.266 0.734 41 H 0.137 0.863 42 H 0.408 0.592 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.064 0.936 46 H 0.059 0.941 47 H 0.071 0.929 48 H 0.064 0.936 49 H 0.063 0.937 50 H 0.070 0.930 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.387 -8.873 0.895 33.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.185 4.185 3 C -0.072 4.072 4 C -0.236 4.236 5 C 0.132 3.868 6 N -0.359 5.359 7 C -0.025 4.025 8 C 0.276 3.724 9 O -0.431 6.431 10 N -0.354 5.354 11 C 0.128 3.872 12 C -0.583 4.583 13 H 0.083 0.917 14 C -0.141 4.141 15 N -0.522 5.522 16 Si 0.732 3.268 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.219 4.219 21 C 0.094 3.906 22 N -0.315 5.315 23 C 0.305 3.695 24 O -0.383 6.383 25 C -0.088 4.088 26 C -0.187 4.187 27 C -0.200 4.200 28 C -0.199 4.199 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.251 0.749 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.226 0.774 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.076 0.924 41 H 0.155 0.845 42 H 0.244 0.756 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.078 0.922 47 H 0.090 0.910 48 H 0.083 0.917 49 H 0.082 0.918 50 H 0.089 0.911 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -30.966 -9.601 0.485 32.424 hybrid contribution 0.328 1.035 0.224 1.109 sum -30.638 -8.565 0.709 31.821 Atomic orbital electron populations 1.20556 0.91590 1.02255 1.01450 1.19319 0.95528 0.91686 1.11977 1.20505 0.93228 0.96587 0.96866 1.20645 0.94302 0.96433 1.12218 1.17623 0.83332 0.93386 0.92427 1.44459 1.02207 1.08369 1.80874 1.21110 0.90678 0.87666 1.03004 1.20355 0.87903 0.86182 0.77921 1.90666 1.79630 1.21642 1.51179 1.46405 1.09339 1.07918 1.71776 1.19159 0.72822 0.97265 0.97913 1.21249 0.91668 0.92025 1.53365 0.91722 1.24964 0.97482 0.96987 0.94623 1.69980 1.07982 1.25451 1.48779 0.86337 0.79739 0.82912 0.77777 1.19598 1.20770 1.20771 1.20571 0.92632 0.97614 1.11119 1.17159 0.90404 0.84205 0.98852 1.43502 1.25715 1.09779 1.52459 1.20797 0.86657 0.84645 0.77361 1.90748 1.20383 1.82566 1.44607 1.20838 0.96476 0.93170 0.98332 1.21687 0.99916 0.96754 1.00358 1.21897 1.02657 1.01747 0.93725 1.21885 0.94597 1.02561 1.00827 0.92054 0.91659 0.92579 0.85972 0.85970 0.74903 0.89624 0.89597 0.77410 0.95374 0.95365 0.92432 0.84501 0.75598 0.91669 0.91822 0.91729 0.92180 0.91022 0.91721 0.91831 0.91082 0.92165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.68 9.47 36.01 0.34 -0.34 16 2 C -0.18 -1.84 5.90 -104.39 -0.62 -2.45 16 3 C -0.05 -0.55 9.69 -39.64 -0.38 -0.93 16 4 C -0.21 -2.56 9.31 -39.34 -0.37 -2.92 16 5 C 0.24 3.37 6.65 -83.81 -0.56 2.81 16 6 N -0.73 -11.16 5.70 -59.83 -0.34 -11.50 16 7 C 0.10 1.50 5.39 -5.19 -0.03 1.47 16 8 C 0.49 9.64 7.90 -10.99 -0.09 9.56 16 9 O -0.55 -13.12 15.67 5.55 0.09 -13.03 16 10 N -0.71 -14.49 5.55 -61.48 -0.34 -14.83 16 11 C 0.25 6.55 5.43 -5.20 -0.03 6.52 16 12 C -0.54 -14.66 9.28 -34.44 -0.32 -14.98 16 13 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 14 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 15 N -0.88 -26.04 13.29 55.43 0.74 -25.30 16 16 Si 0.91 20.76 29.54 -169.99 -5.02 15.74 16 17 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 20 C -0.19 -2.77 8.54 -39.20 -0.33 -3.11 16 21 C 0.19 2.21 6.28 -83.72 -0.53 1.68 16 22 N -0.67 -6.04 4.52 -9.88 -0.04 -6.08 16 23 C 0.52 5.42 6.33 -10.98 -0.07 5.36 16 24 O -0.51 -7.60 13.40 5.56 0.07 -7.53 16 25 C -0.08 -0.58 0.87 -155.66 -0.14 -0.72 16 26 C -0.13 -0.98 7.76 37.16 0.29 -0.69 16 27 C -0.14 -0.71 8.37 37.15 0.31 -0.40 16 28 C -0.14 -0.68 8.37 37.16 0.31 -0.37 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 31 H 0.06 0.33 7.16 -51.93 -0.37 -0.04 16 32 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 33 H 0.12 1.29 6.72 -52.49 -0.35 0.94 16 34 H 0.41 7.04 7.45 -40.82 -0.30 6.74 16 35 H 0.09 1.07 7.95 -51.93 -0.41 0.66 16 36 H 0.09 1.05 7.95 -51.93 -0.41 0.64 16 37 H 0.39 6.75 8.32 -40.82 -0.34 6.41 16 38 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.14 2.18 6.19 -52.49 -0.33 1.85 16 42 H 0.41 2.37 6.70 -40.82 -0.27 2.10 16 43 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 44 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 46 H 0.06 0.22 7.47 -51.93 -0.39 -0.17 16 47 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 48 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 49 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 51 H 0.06 0.21 7.67 -51.93 -0.40 -0.18 16 LS Contribution 416.94 15.07 6.28 6.28 Total: -1.00 -34.58 416.94 -9.04 -43.62 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -8.18 Total: 10.51 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: -2.30 Total: 2.12 kcal Atomic # 7 Polarization: -57.72 SS G_CDS: 0.01 Total: -57.72 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: 0.16 Total: -20.56 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -34.58 -9.04 -43.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759776782.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.199 kcal (2) G-P(sol) polarization free energy of solvation -34.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds