Wall clock time and date at job start Wed Apr 1 2020 05:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38186 * 119.96000 * 2 1 4 4 C 1.38131 * 120.14444 * 180.23076 * 3 2 1 5 5 C 1.38993 * 120.06180 * 359.49454 * 4 3 2 6 6 N 1.39674 * 120.03940 * 180.23461 * 5 4 3 7 7 C 1.46502 * 119.99684 * 359.97438 * 6 5 4 8 8 C 1.50696 * 109.46862 * 180.02562 * 7 6 5 9 9 O 1.21290 * 120.00125 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00099 * 180.02562 * 8 7 6 11 11 C 1.46503 * 120.00360 * 179.97438 * 10 8 7 12 12 C 1.50693 * 109.47316 * 180.02562 * 11 10 8 13 13 H 1.08000 * 120.00443 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99841 * 180.02562 * 12 11 10 15 15 N 1.31509 * 120.00238 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99934 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47380 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47448 * 119.99548 * 16 14 12 19 19 H 1.48497 * 109.47115 * 239.99598 * 16 14 12 20 20 C 1.38763 * 119.92295 * 0.24860 * 5 4 3 21 21 C 1.38757 * 119.85586 * 0.02562 * 20 5 4 22 22 N 1.39922 * 120.03527 * 180.02562 * 21 20 5 23 23 C 1.34778 * 119.99524 * 325.27427 * 22 21 20 24 24 O 1.21280 * 120.00156 * 4.50173 * 23 22 21 25 25 C 1.50710 * 119.99736 * 184.49993 * 23 22 21 26 26 C 1.52999 * 109.46977 * 179.97438 * 25 23 22 27 27 C 1.52993 * 109.47081 * 300.00161 * 25 23 22 28 28 C 1.53001 * 109.47002 * 60.00166 * 25 23 22 29 29 H 1.08997 * 109.47246 * 270.27706 * 1 2 3 30 30 H 1.09003 * 109.47054 * 30.27621 * 1 2 3 31 31 H 1.08994 * 109.47095 * 150.27633 * 1 2 3 32 32 H 1.08000 * 119.93114 * 359.97438 * 3 2 1 33 33 H 1.07995 * 119.97351 * 179.76217 * 4 3 2 34 34 H 0.96991 * 119.99982 * 179.97438 * 6 5 4 35 35 H 1.09004 * 109.47085 * 300.00048 * 7 6 5 36 36 H 1.08995 * 109.47273 * 60.00375 * 7 6 5 37 37 H 0.96999 * 120.00081 * 359.97438 * 10 8 7 38 38 H 1.08996 * 109.47058 * 300.00070 * 11 10 8 39 39 H 1.08998 * 109.46768 * 59.99386 * 11 10 8 40 40 H 0.97000 * 120.00487 * 180.02562 * 15 14 12 41 41 H 1.07993 * 120.07322 * 179.97438 * 20 5 4 42 42 H 0.96994 * 120.00240 * 145.27081 * 22 21 20 43 43 H 1.09003 * 109.47015 * 60.00384 * 26 25 23 44 44 H 1.09001 * 109.46919 * 179.97438 * 26 25 23 45 45 H 1.09000 * 109.47370 * 300.00435 * 26 25 23 46 46 H 1.08998 * 109.47379 * 59.99911 * 27 25 23 47 47 H 1.09001 * 109.47256 * 180.02562 * 27 25 23 48 48 H 1.09003 * 109.47228 * 299.99809 * 27 25 23 49 49 H 1.09000 * 109.47461 * 59.99537 * 28 25 23 50 50 H 1.09001 * 109.46884 * 180.02562 * 28 25 23 51 51 H 1.08998 * 109.46977 * 299.99794 * 28 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1972 0.0000 4 6 3.5784 1.2017 -0.0048 5 6 4.2786 0.0010 0.0009 6 7 5.6753 0.0060 0.0010 7 6 6.4031 1.2775 -0.0055 8 6 7.8857 1.0075 -0.0046 9 8 8.2942 -0.1345 0.0014 10 7 8.7578 2.0350 -0.0095 11 6 10.1991 1.7727 -0.0081 12 6 10.9478 3.0804 -0.0137 13 1 10.4045 4.0138 -0.0183 14 6 12.3266 3.0854 -0.0140 15 7 12.9883 1.9490 -0.0088 16 14 13.2547 4.7066 -0.0216 17 1 12.2856 5.8318 -0.0272 18 1 14.1083 4.7940 1.1904 19 1 14.1080 4.7827 -1.2346 20 6 3.5883 -1.2028 0.0063 21 6 2.2007 -1.2034 0.0054 22 7 1.5009 -2.4151 0.0113 23 6 1.9952 -3.4819 -0.6476 24 8 3.0845 -3.4165 -1.1769 25 6 1.1942 -4.7560 -0.7268 26 6 1.9762 -5.8013 -1.5247 27 6 0.9327 -5.2826 0.6857 28 6 -0.1398 -4.4774 -1.4223 29 1 -0.3633 0.0050 1.0276 30 1 -0.3633 0.8875 -0.5181 31 1 -0.3633 -0.8924 -0.5095 32 1 1.6553 2.1315 -0.0004 33 1 4.1149 2.1389 -0.0087 34 1 6.1633 -0.8321 0.0054 35 1 6.1377 1.8435 -0.8985 36 1 6.1377 1.8527 0.8814 37 1 8.4311 2.9484 -0.0139 38 1 10.4644 1.2064 0.8846 39 1 10.4646 1.1977 -0.8952 40 1 13.9583 1.9524 -0.0087 41 1 4.1299 -2.1371 0.0104 42 1 0.6603 -2.4873 0.4897 43 1 2.9268 -5.9999 -1.0296 44 1 1.3971 -6.7230 -1.5816 45 1 2.1622 -5.4259 -2.5310 46 1 0.3754 -4.5378 1.2538 47 1 0.3538 -6.2044 0.6285 48 1 1.8831 -5.4811 1.1812 49 1 0.0464 -4.1022 -2.4286 50 1 -0.7193 -5.3989 -1.4791 51 1 -0.6971 -3.7326 -0.8542 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759776782.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:11 Heat of formation + Delta-G solvation = -88.484101 kcal Electronic energy + Delta-G solvation = -29658.808351 eV Core-core repulsion = 25556.124613 eV Total energy + Delta-G solvation = -4102.683739 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.90553 -40.85212 -39.92733 -37.22067 -36.70925 -36.21750 -35.12572 -34.43208 -32.61792 -30.75771 -30.03798 -28.31539 -28.24315 -27.98338 -26.08490 -25.10464 -24.44234 -23.15540 -21.88789 -21.31184 -20.48767 -19.37116 -18.68911 -17.86027 -17.73059 -17.24219 -16.78464 -16.74296 -16.62274 -16.37015 -15.97245 -15.57134 -15.38420 -15.07736 -14.84168 -14.79479 -14.56390 -14.36891 -14.33271 -14.18358 -13.98964 -13.78401 -13.37343 -13.10943 -13.02370 -12.94770 -12.92159 -12.87182 -12.76380 -12.65953 -12.42376 -12.24679 -12.18971 -11.95315 -11.91177 -11.54491 -11.49104 -10.98001 -10.85413 -10.66198 -10.60300 -9.94065 -9.21477 -8.31904 -8.25073 -6.48900 0.40910 0.66590 1.42492 1.43667 1.57261 1.57988 1.59133 1.95204 2.13927 2.37749 2.71443 2.94937 3.03432 3.50968 3.77429 3.79165 3.88311 4.00743 4.18633 4.21405 4.24741 4.35728 4.37050 4.48128 4.60445 4.67366 4.70260 4.78998 4.81913 4.91024 4.91787 4.93799 4.96281 4.97568 5.05354 5.18427 5.18459 5.21570 5.29783 5.32069 5.37890 5.41348 5.42651 5.53810 5.60982 5.69012 5.80058 6.00104 6.37436 6.42564 6.60785 6.64382 6.80002 7.13701 7.19115 7.36213 8.80590 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018420 B = 0.001773 C = 0.001642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.681152 B =15790.017731 C =17052.705832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.173 4.173 3 C -0.052 4.052 4 C -0.215 4.215 5 C 0.215 3.785 6 N -0.744 5.744 7 C 0.122 3.878 8 C 0.490 3.510 9 O -0.600 6.600 10 N -0.698 5.698 11 C 0.265 3.735 12 C -0.556 4.556 13 H 0.088 0.912 14 C 0.002 3.998 15 N -0.932 5.932 16 Si 0.987 3.013 17 H -0.250 1.250 18 H -0.279 1.279 19 H -0.280 1.280 20 C -0.221 4.221 21 C 0.177 3.823 22 N -0.655 5.655 23 C 0.511 3.489 24 O -0.564 6.564 25 C -0.079 4.079 26 C -0.130 4.130 27 C -0.140 4.140 28 C -0.138 4.138 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.156 0.844 33 H 0.141 0.859 34 H 0.398 0.602 35 H 0.114 0.886 36 H 0.118 0.882 37 H 0.413 0.587 38 H -0.011 1.011 39 H -0.013 1.013 40 H 0.269 0.731 41 H 0.106 0.894 42 H 0.425 0.575 43 H 0.041 0.959 44 H 0.091 0.909 45 H 0.045 0.955 46 H 0.078 0.922 47 H 0.094 0.906 48 H 0.046 0.954 49 H 0.049 0.951 50 H 0.092 0.908 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.526 -6.144 1.424 37.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.177 4.177 3 C -0.071 4.071 4 C -0.238 4.238 5 C 0.111 3.889 6 N -0.376 5.376 7 C -0.006 4.006 8 C 0.277 3.723 9 O -0.482 6.482 10 N -0.348 5.348 11 C 0.142 3.858 12 C -0.593 4.593 13 H 0.106 0.894 14 C -0.198 4.198 15 N -0.571 5.571 16 Si 0.810 3.190 17 H -0.174 1.174 18 H -0.205 1.205 19 H -0.206 1.206 20 C -0.246 4.246 21 C 0.082 3.918 22 N -0.301 5.301 23 C 0.300 3.700 24 O -0.442 6.442 25 C -0.082 4.082 26 C -0.188 4.188 27 C -0.198 4.198 28 C -0.195 4.195 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.174 0.826 33 H 0.158 0.842 34 H 0.233 0.767 35 H 0.132 0.868 36 H 0.136 0.864 37 H 0.250 0.750 38 H 0.007 0.993 39 H 0.005 0.995 40 H 0.078 0.922 41 H 0.124 0.876 42 H 0.265 0.735 43 H 0.061 0.939 44 H 0.109 0.891 45 H 0.064 0.936 46 H 0.097 0.903 47 H 0.112 0.888 48 H 0.065 0.935 49 H 0.068 0.932 50 H 0.111 0.889 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -35.225 -6.826 1.037 35.896 hybrid contribution 1.515 0.092 0.057 1.519 sum -33.710 -6.734 1.094 34.394 Atomic orbital electron populations 1.20657 0.88609 1.03477 1.03057 1.19781 0.97639 0.90766 1.09504 1.20953 0.92718 0.98042 0.95404 1.20927 0.95267 0.96017 1.11587 1.17817 0.82640 0.94320 0.94111 1.44509 1.02902 1.07817 1.82332 1.21102 0.85904 0.87879 1.05684 1.21305 0.90121 0.84977 0.75901 1.90648 1.80944 1.23757 1.52881 1.46076 1.07206 1.09450 1.72102 1.18589 0.76350 0.96658 0.94193 1.21660 0.92217 0.92626 1.52836 0.89390 1.26109 0.98733 1.01131 0.93826 1.70147 1.08462 1.28475 1.49991 0.85071 0.78216 0.78075 0.77607 1.17364 1.20496 1.20581 1.20534 0.94080 0.96712 1.13235 1.17348 0.89756 0.85909 0.98803 1.43415 1.25936 1.08775 1.51964 1.21614 0.86214 0.85848 0.76295 1.90736 1.22909 1.83550 1.46969 1.20888 0.96782 0.90763 0.99804 1.21705 0.99627 0.98304 0.99162 1.21922 1.02363 1.03304 0.92189 1.21905 0.93358 1.04263 0.99982 0.90093 0.90271 0.91629 0.82624 0.84168 0.76669 0.86836 0.86429 0.75016 0.99343 0.99470 0.92248 0.87645 0.73510 0.93935 0.89052 0.93625 0.90327 0.88767 0.93517 0.93200 0.88893 0.90217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.94 9.47 71.24 0.67 -0.27 16 2 C -0.17 -3.06 5.90 -19.72 -0.12 -3.17 16 3 C -0.05 -0.92 9.69 22.23 0.22 -0.70 16 4 C -0.21 -4.74 9.31 22.43 0.21 -4.53 16 5 C 0.21 6.18 6.65 38.20 0.25 6.44 16 6 N -0.74 -23.77 5.70 -343.19 -1.96 -25.73 16 7 C 0.12 3.41 5.39 85.63 0.46 3.88 16 8 C 0.49 19.78 7.90 87.66 0.69 20.48 16 9 O -0.60 -30.50 15.67 -3.06 -0.05 -30.55 16 10 N -0.70 -29.12 5.55 -466.80 -2.59 -31.71 16 11 C 0.26 14.62 5.43 85.63 0.46 15.08 16 12 C -0.56 -30.13 9.28 25.60 0.24 -29.89 16 13 H 0.09 4.26 7.60 -2.91 -0.02 4.23 16 14 C 0.00 0.08 5.46 84.66 0.46 0.55 16 15 N -0.93 -56.72 13.29 21.45 0.28 -56.43 16 16 Si 0.99 42.33 29.54 68.60 2.03 44.35 16 17 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 18 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 19 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 20 C -0.22 -6.68 8.54 22.52 0.19 -6.48 16 21 C 0.18 4.09 6.28 38.13 0.24 4.33 16 22 N -0.65 -11.38 4.52 -303.56 -1.37 -12.76 16 23 C 0.51 11.12 6.33 87.66 0.55 11.68 16 24 O -0.56 -18.55 13.40 -3.03 -0.04 -18.59 16 25 C -0.08 -1.04 0.87 -52.93 -0.05 -1.08 16 26 C -0.13 -2.07 7.76 71.98 0.56 -1.51 16 27 C -0.14 -1.17 8.37 71.98 0.60 -0.57 16 28 C -0.14 -1.01 8.37 71.98 0.60 -0.41 16 29 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.08 0.58 8.09 -2.39 -0.02 0.56 16 31 H 0.06 0.50 7.16 -2.39 -0.02 0.49 16 32 H 0.16 1.69 8.06 -2.91 -0.02 1.66 16 33 H 0.14 2.49 6.72 -2.91 -0.02 2.47 16 34 H 0.40 14.90 7.45 -92.71 -0.69 14.21 16 35 H 0.11 2.59 7.95 -2.38 -0.02 2.57 16 36 H 0.12 2.59 7.95 -2.39 -0.02 2.57 16 37 H 0.41 13.69 8.32 -92.71 -0.77 12.92 16 38 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 39 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 40 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 41 H 0.11 3.81 6.19 -2.91 -0.02 3.79 16 42 H 0.43 3.96 6.70 -92.71 -0.62 3.34 16 43 H 0.04 0.85 8.10 -2.39 -0.02 0.83 16 44 H 0.09 0.89 8.14 -2.39 -0.02 0.88 16 45 H 0.04 0.88 8.10 -2.39 -0.02 0.86 16 46 H 0.08 0.36 7.47 -2.39 -0.02 0.35 16 47 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 48 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 49 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 50 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 51 H 0.08 0.28 7.67 -2.39 -0.02 0.26 16 Total: -1.00 -83.26 416.94 1.44 -81.82 By element: Atomic # 1 Polarization: 36.92 SS G_CDS: -1.12 Total: 35.80 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: 6.26 Total: 13.80 kcal Atomic # 7 Polarization: -120.99 SS G_CDS: -5.64 Total: -126.63 kcal Atomic # 8 Polarization: -49.05 SS G_CDS: -0.09 Total: -49.14 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.35 kcal Total: -83.26 1.44 -81.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759776782.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.663 kcal (2) G-P(sol) polarization free energy of solvation -83.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds