Wall clock time and date at job start Wed Apr 1 2020 05:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38170 * 119.96529 * 2 1 4 4 C 1.38142 * 120.14232 * 180.23537 * 3 2 1 5 5 C 1.38955 * 120.08050 * 359.78527 * 4 3 2 6 6 N 1.39916 * 120.03529 * 179.97438 * 5 4 3 7 7 C 1.34772 * 120.00259 * 33.35244 * 6 5 4 8 8 O 1.21289 * 119.99723 * 5.27096 * 7 6 5 9 9 C 1.50699 * 120.00302 * 185.27784 * 7 6 5 10 10 C 1.52999 * 109.47059 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.46780 * 299.99642 * 9 7 6 12 12 C 1.52994 * 109.47182 * 59.99509 * 9 7 6 13 13 C 1.38723 * 119.93057 * 359.97438 * 5 4 3 14 14 C 1.38809 * 119.85531 * 359.97438 * 13 5 4 15 15 N 1.39668 * 120.03658 * 179.97438 * 14 13 5 16 16 C 1.46501 * 120.00134 * 0.02562 * 15 14 13 17 17 C 1.50700 * 109.47364 * 180.02562 * 16 15 14 18 18 O 1.21282 * 119.99985 * 359.97438 * 17 16 15 19 19 N 1.34774 * 120.00362 * 180.02562 * 17 16 15 20 20 C 1.46501 * 120.00105 * 179.97438 * 19 17 16 21 21 C 1.50701 * 109.46816 * 179.97438 * 20 19 17 22 22 H 1.08002 * 120.00482 * 0.02562 * 21 20 19 23 23 C 1.37880 * 119.99731 * 179.97438 * 21 20 19 24 24 N 1.31509 * 120.00209 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99859 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47055 * 60.00343 * 25 23 21 27 27 H 1.48499 * 109.47161 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47563 * 300.00441 * 25 23 21 29 29 H 1.08998 * 109.47229 * 270.23385 * 1 2 3 30 30 H 1.08996 * 109.47403 * 30.23361 * 1 2 3 31 31 H 1.09005 * 109.47407 * 150.23230 * 1 2 3 32 32 H 1.07995 * 119.93399 * 359.97438 * 3 2 1 33 33 H 1.08002 * 119.96481 * 179.76857 * 4 3 2 34 34 H 0.97005 * 119.99921 * 213.34866 * 6 5 4 35 35 H 1.08998 * 109.47630 * 59.99769 * 10 9 7 36 36 H 1.09005 * 109.46684 * 179.97438 * 10 9 7 37 37 H 1.09003 * 109.47203 * 299.99405 * 10 9 7 38 38 H 1.09002 * 109.47511 * 60.00200 * 11 9 7 39 39 H 1.09000 * 109.47475 * 180.02562 * 11 9 7 40 40 H 1.09007 * 109.47220 * 299.99927 * 11 9 7 41 41 H 1.08994 * 109.47395 * 60.00530 * 12 9 7 42 42 H 1.09005 * 109.47206 * 180.02562 * 12 9 7 43 43 H 1.09002 * 109.47170 * 299.99836 * 12 9 7 44 44 H 1.07994 * 120.06869 * 180.02562 * 13 5 4 45 45 H 0.96999 * 120.00020 * 180.02562 * 15 14 13 46 46 H 1.09002 * 109.47023 * 299.99554 * 16 15 14 47 47 H 1.09000 * 109.46951 * 59.99795 * 16 15 14 48 48 H 0.97000 * 119.99548 * 359.97438 * 19 17 16 49 49 H 1.08993 * 109.46837 * 299.99730 * 20 19 17 50 50 H 1.09000 * 109.47213 * 59.99910 * 20 19 17 51 51 H 0.97000 * 120.00678 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1970 0.0000 4 6 3.5785 1.2013 -0.0049 5 6 4.2787 0.0010 -0.0054 6 7 5.6778 0.0065 -0.0109 7 6 6.3505 0.9852 0.6263 8 8 5.7473 1.8066 1.2840 9 6 7.8520 1.0592 0.5215 10 6 8.3615 2.2534 1.3309 11 6 8.4657 -0.2297 1.0719 12 6 8.2531 1.2293 -0.9451 13 6 3.5891 -1.2026 -0.0003 14 6 2.2010 -1.2037 0.0057 15 7 1.5028 -2.4133 0.0102 16 6 2.2354 -3.6820 0.0092 17 6 1.2563 -4.8275 0.0141 18 8 0.0639 -4.6061 0.0185 19 7 1.7057 -6.0982 0.0146 20 6 0.7538 -7.2118 0.0200 21 6 1.5075 -8.5168 0.0188 22 1 2.5875 -8.5167 0.0149 23 6 0.8182 -9.7109 0.0237 24 7 -0.4969 -9.7111 0.0290 25 14 1.7524 -11.3285 0.0216 26 1 2.6119 -11.4054 1.2302 27 1 0.7876 -12.4574 0.0271 28 1 2.6006 -11.4089 -1.1948 29 1 -0.3633 0.0042 1.0276 30 1 -0.3634 0.8878 -0.5174 31 1 -0.3634 -0.8921 -0.5102 32 1 1.6555 2.1313 -0.0004 33 1 4.1151 2.1386 -0.0087 34 1 6.1638 -0.6943 -0.4733 35 1 8.0757 2.1327 2.3758 36 1 9.4476 2.3065 1.2554 37 1 7.9243 3.1715 0.9384 38 1 8.1027 -1.0803 0.4949 39 1 9.5517 -0.1762 0.9966 40 1 8.1799 -0.3509 2.1168 41 1 7.8160 2.1475 -1.3372 42 1 9.3392 1.2823 -1.0210 43 1 7.8901 0.3787 -1.5221 44 1 4.1310 -2.1367 -0.0002 45 1 0.5328 -2.4134 0.0140 46 1 2.8585 -3.7410 -0.8832 47 1 2.8656 -3.7383 0.8968 48 1 2.6594 -6.2753 0.0115 49 1 0.1305 -7.1526 0.9121 50 1 0.1239 -7.1556 -0.8678 51 1 -0.9818 -10.5512 0.0321 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759777624.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:01 Heat of formation + Delta-G solvation = -64.359188 kcal Electronic energy + Delta-G solvation = -29663.330188 eV Core-core repulsion = 25561.692584 eV Total energy + Delta-G solvation = -4101.637604 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.03115 -39.65087 -38.79663 -36.30321 -35.70621 -34.63149 -34.21987 -32.45722 -31.61446 -30.02710 -28.04243 -27.85863 -27.64723 -26.62979 -25.87619 -23.60834 -22.89346 -21.83934 -21.17674 -19.91261 -19.53558 -18.42704 -17.23105 -17.07494 -16.24584 -15.83841 -15.73767 -15.39428 -15.32745 -15.23952 -14.84990 -14.57205 -14.35576 -14.26413 -14.02680 -13.77810 -13.61737 -13.37621 -13.09648 -12.87490 -12.74254 -12.65748 -12.48882 -12.32176 -12.18998 -12.14813 -12.03544 -11.77713 -11.53834 -11.43268 -11.41753 -11.21985 -11.07164 -10.93661 -10.59335 -10.39992 -10.01024 -9.67409 -9.50908 -9.31618 -8.82838 -8.29923 -8.05249 -7.28550 -6.23755 -4.31589 1.23627 1.63557 2.37288 2.74261 3.12045 3.20432 3.24619 3.26519 3.33168 3.84422 4.03120 4.11199 4.26152 4.30053 4.37798 4.69367 4.83986 5.02062 5.04772 5.12112 5.12381 5.18544 5.21436 5.22015 5.32432 5.34524 5.35521 5.40853 5.41424 5.44036 5.46421 5.60842 5.64145 5.68226 5.71701 5.72943 5.85477 5.98397 6.16543 6.31604 6.39818 6.60196 6.85681 7.15702 7.16526 7.23812 7.33729 7.40416 7.55796 7.80318 7.85898 7.88132 8.44776 8.64645 8.89823 9.34935 10.86271 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011600 B = 0.002005 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.268153 B =13961.999581 C =16105.994916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.174 4.174 3 C -0.055 4.055 4 C -0.179 4.179 5 C 0.185 3.815 6 N -0.671 5.671 7 C 0.522 3.478 8 O -0.515 6.515 9 C -0.085 4.085 10 C -0.128 4.128 11 C -0.144 4.144 12 C -0.142 4.142 13 C -0.226 4.226 14 C 0.243 3.757 15 N -0.728 5.728 16 C 0.102 3.898 17 C 0.493 3.507 18 O -0.553 6.553 19 N -0.706 5.706 20 C 0.250 3.750 21 C -0.547 4.547 22 H 0.063 0.937 23 C 0.064 3.936 24 N -0.884 5.884 25 Si 0.905 3.095 26 H -0.275 1.275 27 H -0.285 1.285 28 H -0.275 1.275 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.122 0.878 33 H 0.127 0.873 34 H 0.408 0.592 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.070 0.930 43 H 0.061 0.939 44 H 0.124 0.876 45 H 0.413 0.587 46 H 0.085 0.915 47 H 0.085 0.915 48 H 0.393 0.607 49 H 0.028 0.972 50 H 0.028 0.972 51 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.798 22.840 -1.618 29.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.179 4.179 3 C -0.074 4.074 4 C -0.201 4.201 5 C 0.091 3.909 6 N -0.316 5.316 7 C 0.309 3.691 8 O -0.389 6.389 9 C -0.089 4.089 10 C -0.186 4.186 11 C -0.201 4.201 12 C -0.199 4.199 13 C -0.251 4.251 14 C 0.138 3.862 15 N -0.362 5.362 16 C -0.026 4.026 17 C 0.277 3.723 18 O -0.432 6.432 19 N -0.354 5.354 20 C 0.129 3.871 21 C -0.585 4.585 22 H 0.081 0.919 23 C -0.140 4.140 24 N -0.521 5.521 25 Si 0.732 3.268 26 H -0.200 1.200 27 H -0.210 1.210 28 H -0.200 1.200 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.140 0.860 33 H 0.144 0.856 34 H 0.244 0.756 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.080 0.920 44 H 0.142 0.858 45 H 0.253 0.747 46 H 0.103 0.897 47 H 0.103 0.897 48 H 0.226 0.774 49 H 0.046 0.954 50 H 0.046 0.954 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 16.477 23.247 -1.139 28.517 hybrid contribution 0.836 -1.579 -0.217 1.799 sum 17.313 21.668 -1.356 27.769 Atomic orbital electron populations 1.20591 0.91258 1.02402 1.02023 1.19359 0.95944 0.91496 1.11118 1.20604 0.93295 0.96698 0.96807 1.20758 0.93915 0.96962 1.08446 1.17353 0.81736 0.93606 0.98240 1.43547 1.05039 1.29047 1.53936 1.20747 0.89860 0.80489 0.78009 1.90726 1.69955 1.39469 1.38751 1.20841 0.90814 0.98816 0.98400 1.21678 1.00454 0.96279 1.00190 1.21907 1.01608 0.94916 1.01679 1.21886 1.02499 1.02631 0.92919 1.20214 0.92405 0.96883 1.15636 1.17276 0.90387 0.85523 0.93057 1.44520 1.09358 1.01139 1.81135 1.21113 0.94727 0.83854 1.02915 1.20339 0.89387 0.84667 0.77925 1.90656 1.16714 1.84558 1.51294 1.46414 1.11424 1.05865 1.71663 1.19156 0.88235 0.81773 0.97913 1.21162 0.93246 0.90353 1.53722 0.91860 1.24958 0.94941 0.99519 0.94582 1.69955 1.06133 1.27555 1.48506 0.86450 0.79410 0.82193 0.78716 1.20023 1.21030 1.20028 0.91664 0.91659 0.91917 0.85977 0.85557 0.75591 0.91777 0.91817 0.91814 0.92020 0.91013 0.91775 0.91872 0.91052 0.91998 0.85821 0.74653 0.89713 0.89703 0.77430 0.95359 0.95356 0.92292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 9.56 36.01 0.34 -0.81 16 2 C -0.17 -2.16 5.90 -104.39 -0.62 -2.78 16 3 C -0.05 -0.64 9.69 -39.64 -0.38 -1.03 16 4 C -0.18 -2.22 8.65 -39.35 -0.34 -2.56 16 5 C 0.18 2.15 6.27 -83.72 -0.53 1.62 16 6 N -0.67 -5.99 5.12 -9.88 -0.05 -6.04 16 7 C 0.52 5.11 6.22 -10.99 -0.07 5.04 16 8 O -0.52 -6.98 13.67 5.55 0.08 -6.91 16 9 C -0.09 -0.55 0.87 -155.67 -0.14 -0.68 16 10 C -0.13 -0.85 7.76 37.16 0.29 -0.56 16 11 C -0.14 -0.72 8.37 37.16 0.31 -0.40 16 12 C -0.14 -0.67 8.37 37.15 0.31 -0.36 16 13 C -0.23 -2.65 9.22 -39.19 -0.36 -3.01 16 14 C 0.24 3.17 6.63 -83.82 -0.56 2.62 16 15 N -0.73 -10.13 5.60 -59.83 -0.34 -10.46 16 16 C 0.10 1.37 5.39 -5.19 -0.03 1.34 16 17 C 0.49 9.14 7.90 -10.99 -0.09 9.05 16 18 O -0.55 -12.45 15.67 5.56 0.09 -12.37 16 19 N -0.71 -13.86 5.55 -61.47 -0.34 -14.20 16 20 C 0.25 6.37 5.43 -5.19 -0.03 6.34 16 21 C -0.55 -14.35 9.28 -34.44 -0.32 -14.67 16 22 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16 23 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 24 N -0.88 -25.53 13.29 55.43 0.74 -24.79 16 25 Si 0.91 20.34 29.54 -169.99 -5.02 15.32 16 26 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 27 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 28 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 31 H 0.06 0.72 6.54 -51.93 -0.34 0.38 16 32 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.13 1.63 6.41 -52.49 -0.34 1.29 16 34 H 0.41 2.46 7.68 -40.82 -0.31 2.14 16 35 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 36 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 38 H 0.06 0.25 7.45 -51.93 -0.39 -0.14 16 39 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 41 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 43 H 0.06 0.24 7.69 -51.93 -0.40 -0.16 16 44 H 0.12 1.23 6.73 -52.49 -0.35 0.87 16 45 H 0.41 6.25 5.43 -40.82 -0.22 6.03 16 46 H 0.08 0.95 7.95 -51.93 -0.41 0.54 16 47 H 0.09 0.99 7.95 -51.93 -0.41 0.58 16 48 H 0.39 6.42 8.32 -40.82 -0.34 6.08 16 49 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 50 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 51 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 416.26 15.07 6.27 6.27 Total: -1.00 -33.49 416.26 -8.98 -42.47 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -8.12 Total: 9.92 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: -2.29 Total: 0.79 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: 0.01 Total: -55.49 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: 0.16 Total: -19.27 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -33.49 -8.98 -42.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759777624.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.891 kcal (2) G-P(sol) polarization free energy of solvation -33.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds