Wall clock time and date at job start Wed Apr 1 2020 05:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38170 * 119.96529 * 2 1 4 4 C 1.38142 * 120.14232 * 180.23537 * 3 2 1 5 5 C 1.38955 * 120.08050 * 359.78527 * 4 3 2 6 6 N 1.39916 * 120.03529 * 179.97438 * 5 4 3 7 7 C 1.34772 * 120.00259 * 33.35244 * 6 5 4 8 8 O 1.21289 * 119.99723 * 5.27096 * 7 6 5 9 9 C 1.50699 * 120.00302 * 185.27784 * 7 6 5 10 10 C 1.52999 * 109.47059 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.46780 * 299.99642 * 9 7 6 12 12 C 1.52994 * 109.47182 * 59.99509 * 9 7 6 13 13 C 1.38723 * 119.93057 * 359.97438 * 5 4 3 14 14 C 1.38809 * 119.85531 * 359.97438 * 13 5 4 15 15 N 1.39668 * 120.03658 * 179.97438 * 14 13 5 16 16 C 1.46501 * 120.00134 * 0.02562 * 15 14 13 17 17 C 1.50700 * 109.47364 * 180.02562 * 16 15 14 18 18 O 1.21282 * 119.99985 * 359.97438 * 17 16 15 19 19 N 1.34774 * 120.00362 * 180.02562 * 17 16 15 20 20 C 1.46501 * 120.00105 * 179.97438 * 19 17 16 21 21 C 1.50701 * 109.46816 * 179.97438 * 20 19 17 22 22 H 1.08002 * 120.00482 * 0.02562 * 21 20 19 23 23 C 1.37880 * 119.99731 * 179.97438 * 21 20 19 24 24 N 1.31509 * 120.00209 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99859 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47055 * 60.00343 * 25 23 21 27 27 H 1.48499 * 109.47161 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47563 * 300.00441 * 25 23 21 29 29 H 1.08998 * 109.47229 * 270.23385 * 1 2 3 30 30 H 1.08996 * 109.47403 * 30.23361 * 1 2 3 31 31 H 1.09005 * 109.47407 * 150.23230 * 1 2 3 32 32 H 1.07995 * 119.93399 * 359.97438 * 3 2 1 33 33 H 1.08002 * 119.96481 * 179.76857 * 4 3 2 34 34 H 0.97005 * 119.99921 * 213.34866 * 6 5 4 35 35 H 1.08998 * 109.47630 * 59.99769 * 10 9 7 36 36 H 1.09005 * 109.46684 * 179.97438 * 10 9 7 37 37 H 1.09003 * 109.47203 * 299.99405 * 10 9 7 38 38 H 1.09002 * 109.47511 * 60.00200 * 11 9 7 39 39 H 1.09000 * 109.47475 * 180.02562 * 11 9 7 40 40 H 1.09007 * 109.47220 * 299.99927 * 11 9 7 41 41 H 1.08994 * 109.47395 * 60.00530 * 12 9 7 42 42 H 1.09005 * 109.47206 * 180.02562 * 12 9 7 43 43 H 1.09002 * 109.47170 * 299.99836 * 12 9 7 44 44 H 1.07994 * 120.06869 * 180.02562 * 13 5 4 45 45 H 0.96999 * 120.00020 * 180.02562 * 15 14 13 46 46 H 1.09002 * 109.47023 * 299.99554 * 16 15 14 47 47 H 1.09000 * 109.46951 * 59.99795 * 16 15 14 48 48 H 0.97000 * 119.99548 * 359.97438 * 19 17 16 49 49 H 1.08993 * 109.46837 * 299.99730 * 20 19 17 50 50 H 1.09000 * 109.47213 * 59.99910 * 20 19 17 51 51 H 0.97000 * 120.00678 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1970 0.0000 4 6 3.5785 1.2013 -0.0049 5 6 4.2787 0.0010 -0.0054 6 7 5.6778 0.0065 -0.0109 7 6 6.3505 0.9852 0.6263 8 8 5.7473 1.8066 1.2840 9 6 7.8520 1.0592 0.5215 10 6 8.3615 2.2534 1.3309 11 6 8.4657 -0.2297 1.0719 12 6 8.2531 1.2293 -0.9451 13 6 3.5891 -1.2026 -0.0003 14 6 2.2010 -1.2037 0.0057 15 7 1.5028 -2.4133 0.0102 16 6 2.2354 -3.6820 0.0092 17 6 1.2563 -4.8275 0.0141 18 8 0.0639 -4.6061 0.0185 19 7 1.7057 -6.0982 0.0146 20 6 0.7538 -7.2118 0.0200 21 6 1.5075 -8.5168 0.0188 22 1 2.5875 -8.5167 0.0149 23 6 0.8182 -9.7109 0.0237 24 7 -0.4969 -9.7111 0.0290 25 14 1.7524 -11.3285 0.0216 26 1 2.6119 -11.4054 1.2302 27 1 0.7876 -12.4574 0.0271 28 1 2.6006 -11.4089 -1.1948 29 1 -0.3633 0.0042 1.0276 30 1 -0.3634 0.8878 -0.5174 31 1 -0.3634 -0.8921 -0.5102 32 1 1.6555 2.1313 -0.0004 33 1 4.1151 2.1386 -0.0087 34 1 6.1638 -0.6943 -0.4733 35 1 8.0757 2.1327 2.3758 36 1 9.4476 2.3065 1.2554 37 1 7.9243 3.1715 0.9384 38 1 8.1027 -1.0803 0.4949 39 1 9.5517 -0.1762 0.9966 40 1 8.1799 -0.3509 2.1168 41 1 7.8160 2.1475 -1.3372 42 1 9.3392 1.2823 -1.0210 43 1 7.8901 0.3787 -1.5221 44 1 4.1310 -2.1367 -0.0002 45 1 0.5328 -2.4134 0.0140 46 1 2.8585 -3.7410 -0.8832 47 1 2.8656 -3.7383 0.8968 48 1 2.6594 -6.2753 0.0115 49 1 0.1305 -7.1526 0.9121 50 1 0.1239 -7.1556 -0.8678 51 1 -0.9818 -10.5512 0.0321 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759777624.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:01 Heat of formation + Delta-G solvation = -87.304057 kcal Electronic energy + Delta-G solvation = -29664.325152 eV Core-core repulsion = 25561.692584 eV Total energy + Delta-G solvation = -4102.632568 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.82275 -40.87308 -40.01241 -37.05456 -36.54776 -36.18725 -35.43635 -34.39717 -32.47365 -31.15742 -29.61198 -28.23276 -28.21029 -27.75432 -26.97035 -24.65825 -24.33428 -23.00073 -22.04483 -21.43401 -20.30086 -19.51758 -18.65588 -17.82673 -17.66110 -17.20822 -16.81100 -16.74418 -16.56651 -16.17600 -16.09087 -15.54748 -15.39138 -15.18059 -14.78849 -14.77407 -14.53858 -14.45001 -14.35131 -14.14007 -13.86718 -13.64647 -13.42044 -13.23549 -13.09123 -13.00845 -12.95955 -12.87347 -12.68008 -12.61565 -12.41715 -12.25219 -12.10102 -11.90707 -11.86519 -11.52895 -11.51281 -10.94172 -10.83968 -10.80326 -10.54966 -9.90324 -9.18079 -8.29639 -8.26851 -6.46282 0.34079 0.68489 1.43955 1.47536 1.55717 1.60444 1.62914 1.96915 2.13669 2.39257 2.74879 2.93281 3.05606 3.52988 3.80750 3.81629 3.92218 3.95397 4.13162 4.22072 4.27306 4.34035 4.38912 4.45215 4.61606 4.70306 4.72476 4.73754 4.81599 4.83310 4.83744 4.95964 4.96158 5.01025 5.08561 5.12120 5.22217 5.24153 5.25444 5.34901 5.35402 5.43677 5.45888 5.50598 5.62615 5.67561 5.82736 5.95434 6.33434 6.45680 6.63167 6.68315 6.83546 7.14056 7.21638 7.39135 8.82082 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011600 B = 0.002005 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.268153 B =13961.999581 C =16105.994916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.186 4.186 3 C -0.058 4.058 4 C -0.191 4.191 5 C 0.180 3.820 6 N -0.660 5.660 7 C 0.517 3.483 8 O -0.559 6.559 9 C -0.079 4.079 10 C -0.129 4.129 11 C -0.142 4.142 12 C -0.140 4.140 13 C -0.224 4.224 14 C 0.229 3.771 15 N -0.738 5.738 16 C 0.118 3.882 17 C 0.491 3.509 18 O -0.597 6.597 19 N -0.699 5.699 20 C 0.266 3.734 21 C -0.556 4.556 22 H 0.087 0.913 23 C 0.003 3.997 24 N -0.931 5.931 25 Si 0.984 3.016 26 H -0.262 1.262 27 H -0.288 1.288 28 H -0.261 1.261 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.052 0.948 32 H 0.138 0.862 33 H 0.117 0.883 34 H 0.424 0.576 35 H 0.046 0.954 36 H 0.087 0.913 37 H 0.049 0.951 38 H 0.075 0.925 39 H 0.090 0.910 40 H 0.050 0.950 41 H 0.052 0.948 42 H 0.090 0.910 43 H 0.073 0.927 44 H 0.146 0.854 45 H 0.405 0.595 46 H 0.117 0.883 47 H 0.112 0.888 48 H 0.413 0.587 49 H -0.012 1.012 50 H -0.010 1.010 51 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.435 22.283 -2.222 30.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.191 4.191 3 C -0.077 4.077 4 C -0.214 4.214 5 C 0.085 3.915 6 N -0.305 5.305 7 C 0.306 3.694 8 O -0.436 6.436 9 C -0.082 4.082 10 C -0.186 4.186 11 C -0.200 4.200 12 C -0.197 4.197 13 C -0.249 4.249 14 C 0.124 3.876 15 N -0.371 5.371 16 C -0.010 4.010 17 C 0.278 3.722 18 O -0.479 6.479 19 N -0.349 5.349 20 C 0.143 3.857 21 C -0.594 4.594 22 H 0.105 0.895 23 C -0.197 4.197 24 N -0.569 5.569 25 Si 0.807 3.193 26 H -0.186 1.186 27 H -0.214 1.214 28 H -0.185 1.185 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.071 0.929 32 H 0.156 0.844 33 H 0.135 0.865 34 H 0.263 0.737 35 H 0.065 0.935 36 H 0.106 0.894 37 H 0.068 0.932 38 H 0.094 0.906 39 H 0.109 0.891 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.109 0.891 43 H 0.092 0.908 44 H 0.164 0.836 45 H 0.244 0.756 46 H 0.135 0.865 47 H 0.130 0.870 48 H 0.249 0.751 49 H 0.006 0.994 50 H 0.008 0.992 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 20.201 22.706 -1.762 30.443 hybrid contribution -0.321 -1.279 -0.020 1.319 sum 19.880 21.427 -1.782 29.283 Atomic orbital electron populations 1.20585 0.90641 1.02706 1.02110 1.19566 0.96619 0.91655 1.11257 1.20795 0.93266 0.97289 0.96344 1.20849 0.94343 0.97148 1.09011 1.17464 0.83000 0.93337 0.97673 1.43500 1.04089 1.29359 1.53594 1.21477 0.91301 0.79641 0.76956 1.90708 1.71105 1.41096 1.40708 1.20876 0.88110 0.99518 0.99736 1.21694 1.01889 0.95923 0.99121 1.21935 1.02750 0.94329 1.00961 1.21907 1.03745 1.02650 0.91410 1.20395 0.91928 0.97746 1.14848 1.17455 0.91040 0.85230 0.93847 1.44543 1.09035 1.01543 1.81955 1.21119 0.93100 0.81147 1.05632 1.21255 0.89707 0.85294 0.75930 1.90641 1.19259 1.85226 1.52817 1.46083 1.11548 1.05169 1.72126 1.18570 0.88675 0.84187 0.94264 1.21594 0.94430 0.90439 1.52941 0.89503 1.26068 0.95766 1.03946 0.93909 1.70124 1.08284 1.28624 1.49892 0.85214 0.77897 0.76615 0.79547 1.18634 1.21380 1.18539 0.91687 0.90045 0.92880 0.84392 0.86489 0.73714 0.93458 0.89399 0.93210 0.90630 0.89096 0.93075 0.92920 0.89097 0.90812 0.83590 0.75627 0.86495 0.86992 0.75096 0.99360 0.99246 0.92288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.25 9.56 71.24 0.68 -1.56 16 2 C -0.19 -4.50 5.90 -19.71 -0.12 -4.62 16 3 C -0.06 -1.33 9.69 22.23 0.22 -1.12 16 4 C -0.19 -4.68 8.65 22.42 0.19 -4.49 16 5 C 0.18 3.93 6.27 38.14 0.24 4.16 16 6 N -0.66 -10.55 5.12 -303.57 -1.55 -12.10 16 7 C 0.52 9.64 6.22 87.66 0.54 10.18 16 8 O -0.56 -15.35 13.67 -3.06 -0.04 -15.39 16 9 C -0.08 -0.87 0.87 -52.93 -0.05 -0.92 16 10 C -0.13 -1.59 7.76 71.98 0.56 -1.03 16 11 C -0.14 -1.02 8.37 71.98 0.60 -0.42 16 12 C -0.14 -0.95 8.37 71.98 0.60 -0.35 16 13 C -0.22 -4.74 9.22 22.52 0.21 -4.54 16 14 C 0.23 5.66 6.63 38.20 0.25 5.92 16 15 N -0.74 -19.68 5.60 -343.19 -1.92 -21.60 16 16 C 0.12 2.85 5.39 85.63 0.46 3.32 16 17 C 0.49 18.01 7.90 87.66 0.69 18.70 16 18 O -0.60 -27.72 15.67 -3.04 -0.05 -27.77 16 19 N -0.70 -27.13 5.55 -466.79 -2.59 -29.72 16 20 C 0.27 13.99 5.43 85.63 0.46 14.45 16 21 C -0.56 -29.05 9.28 25.60 0.24 -28.81 16 22 H 0.09 4.02 7.60 -2.91 -0.02 4.00 16 23 C 0.00 0.15 5.46 84.66 0.46 0.62 16 24 N -0.93 -55.08 13.29 21.45 0.28 -54.79 16 25 Si 0.98 41.04 29.54 68.60 2.03 43.07 16 26 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 27 H -0.29 -12.07 7.11 99.48 0.71 -11.36 16 28 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 29 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.08 1.45 8.09 -2.39 -0.02 1.43 16 31 H 0.05 1.25 6.54 -2.38 -0.02 1.23 16 32 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 33 H 0.12 3.07 6.41 -2.91 -0.02 3.05 16 34 H 0.42 3.84 7.68 -92.70 -0.71 3.13 16 35 H 0.05 0.73 8.10 -2.39 -0.02 0.71 16 36 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 37 H 0.05 0.74 8.10 -2.39 -0.02 0.72 16 38 H 0.07 0.34 7.45 -2.39 -0.02 0.32 16 39 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 41 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 42 H 0.09 0.30 8.14 -2.38 -0.02 0.28 16 43 H 0.07 0.33 7.69 -2.39 -0.02 0.32 16 44 H 0.15 2.33 6.73 -2.91 -0.02 2.31 16 45 H 0.41 12.31 5.43 -92.71 -0.50 11.81 16 46 H 0.12 2.16 7.95 -2.39 -0.02 2.14 16 47 H 0.11 2.19 7.95 -2.39 -0.02 2.17 16 48 H 0.41 12.58 8.32 -92.71 -0.77 11.81 16 49 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 50 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 51 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -76.64 416.26 1.39 -75.25 By element: Atomic # 1 Polarization: 34.58 SS G_CDS: -1.02 Total: 33.55 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 6.26 Total: 9.50 kcal Atomic # 7 Polarization: -112.43 SS G_CDS: -5.78 Total: -118.21 kcal Atomic # 8 Polarization: -43.07 SS G_CDS: -0.09 Total: -43.16 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Total: -76.64 1.39 -75.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759777624.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.054 kcal (2) G-P(sol) polarization free energy of solvation -76.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds