Wall clock time and date at job start Wed Apr 1 2020 05:07:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 C 1.38170 * 119.96529 * 2 1
4 4 C 1.38142 * 120.14232 * 180.23537 * 3 2 1
5 5 C 1.38955 * 120.08050 * 359.78527 * 4 3 2
6 6 N 1.39916 * 120.03529 * 179.97438 * 5 4 3
7 7 C 1.34772 * 120.00259 * 33.35244 * 6 5 4
8 8 O 1.21289 * 119.99723 * 5.27096 * 7 6 5
9 9 C 1.50699 * 120.00302 * 185.27784 * 7 6 5
10 10 C 1.52999 * 109.47059 * 179.97438 * 9 7 6
11 11 C 1.52998 * 109.46780 * 299.99642 * 9 7 6
12 12 C 1.52994 * 109.47182 * 59.99509 * 9 7 6
13 13 C 1.38723 * 119.93057 * 359.97438 * 5 4 3
14 14 C 1.38809 * 119.85531 * 359.97438 * 13 5 4
15 15 N 1.39668 * 120.03658 * 179.97438 * 14 13 5
16 16 C 1.46501 * 120.00134 * 0.02562 * 15 14 13
17 17 C 1.50700 * 109.47364 * 180.02562 * 16 15 14
18 18 O 1.21282 * 119.99985 * 359.97438 * 17 16 15
19 19 N 1.34774 * 120.00362 * 180.02562 * 17 16 15
20 20 C 1.46501 * 120.00105 * 179.97438 * 19 17 16
21 21 C 1.50701 * 109.46816 * 179.97438 * 20 19 17
22 22 H 1.08002 * 120.00482 * 0.02562 * 21 20 19
23 23 C 1.37880 * 119.99731 * 179.97438 * 21 20 19
24 24 N 1.31509 * 120.00209 * 0.02562 * 23 21 20
25 25 Si 1.86800 * 119.99859 * 179.97438 * 23 21 20
26 26 H 1.48502 * 109.47055 * 60.00343 * 25 23 21
27 27 H 1.48499 * 109.47161 * 180.02562 * 25 23 21
28 28 H 1.48501 * 109.47563 * 300.00441 * 25 23 21
29 29 H 1.08998 * 109.47229 * 270.23385 * 1 2 3
30 30 H 1.08996 * 109.47403 * 30.23361 * 1 2 3
31 31 H 1.09005 * 109.47407 * 150.23230 * 1 2 3
32 32 H 1.07995 * 119.93399 * 359.97438 * 3 2 1
33 33 H 1.08002 * 119.96481 * 179.76857 * 4 3 2
34 34 H 0.97005 * 119.99921 * 213.34866 * 6 5 4
35 35 H 1.08998 * 109.47630 * 59.99769 * 10 9 7
36 36 H 1.09005 * 109.46684 * 179.97438 * 10 9 7
37 37 H 1.09003 * 109.47203 * 299.99405 * 10 9 7
38 38 H 1.09002 * 109.47511 * 60.00200 * 11 9 7
39 39 H 1.09000 * 109.47475 * 180.02562 * 11 9 7
40 40 H 1.09007 * 109.47220 * 299.99927 * 11 9 7
41 41 H 1.08994 * 109.47395 * 60.00530 * 12 9 7
42 42 H 1.09005 * 109.47206 * 180.02562 * 12 9 7
43 43 H 1.09002 * 109.47170 * 299.99836 * 12 9 7
44 44 H 1.07994 * 120.06869 * 180.02562 * 13 5 4
45 45 H 0.96999 * 120.00020 * 180.02562 * 15 14 13
46 46 H 1.09002 * 109.47023 * 299.99554 * 16 15 14
47 47 H 1.09000 * 109.46951 * 59.99795 * 16 15 14
48 48 H 0.97000 * 119.99548 * 359.97438 * 19 17 16
49 49 H 1.08993 * 109.46837 * 299.99730 * 20 19 17
50 50 H 1.09000 * 109.47213 * 59.99910 * 20 19 17
51 51 H 0.97000 * 120.00678 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1971 1.1970 0.0000
4 6 3.5785 1.2013 -0.0049
5 6 4.2787 0.0010 -0.0054
6 7 5.6778 0.0065 -0.0109
7 6 6.3505 0.9852 0.6263
8 8 5.7473 1.8066 1.2840
9 6 7.8520 1.0592 0.5215
10 6 8.3615 2.2534 1.3309
11 6 8.4657 -0.2297 1.0719
12 6 8.2531 1.2293 -0.9451
13 6 3.5891 -1.2026 -0.0003
14 6 2.2010 -1.2037 0.0057
15 7 1.5028 -2.4133 0.0102
16 6 2.2354 -3.6820 0.0092
17 6 1.2563 -4.8275 0.0141
18 8 0.0639 -4.6061 0.0185
19 7 1.7057 -6.0982 0.0146
20 6 0.7538 -7.2118 0.0200
21 6 1.5075 -8.5168 0.0188
22 1 2.5875 -8.5167 0.0149
23 6 0.8182 -9.7109 0.0237
24 7 -0.4969 -9.7111 0.0290
25 14 1.7524 -11.3285 0.0216
26 1 2.6119 -11.4054 1.2302
27 1 0.7876 -12.4574 0.0271
28 1 2.6006 -11.4089 -1.1948
29 1 -0.3633 0.0042 1.0276
30 1 -0.3634 0.8878 -0.5174
31 1 -0.3634 -0.8921 -0.5102
32 1 1.6555 2.1313 -0.0004
33 1 4.1151 2.1386 -0.0087
34 1 6.1638 -0.6943 -0.4733
35 1 8.0757 2.1327 2.3758
36 1 9.4476 2.3065 1.2554
37 1 7.9243 3.1715 0.9384
38 1 8.1027 -1.0803 0.4949
39 1 9.5517 -0.1762 0.9966
40 1 8.1799 -0.3509 2.1168
41 1 7.8160 2.1475 -1.3372
42 1 9.3392 1.2823 -1.0210
43 1 7.8901 0.3787 -1.5221
44 1 4.1310 -2.1367 -0.0002
45 1 0.5328 -2.4134 0.0140
46 1 2.8585 -3.7410 -0.8832
47 1 2.8656 -3.7383 0.8968
48 1 2.6594 -6.2753 0.0115
49 1 0.1305 -7.1526 0.9121
50 1 0.1239 -7.1556 -0.8678
51 1 -0.9818 -10.5512 0.0321
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000759777624.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:07:01
Heat of formation + Delta-G solvation = -87.304057 kcal
Electronic energy + Delta-G solvation = -29664.325152 eV
Core-core repulsion = 25561.692584 eV
Total energy + Delta-G solvation = -4102.632568 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-41.82275 -40.87308 -40.01241 -37.05456 -36.54776 -36.18725 -35.43635 -34.39717
-32.47365 -31.15742 -29.61198 -28.23276 -28.21029 -27.75432 -26.97035 -24.65825
-24.33428 -23.00073 -22.04483 -21.43401 -20.30086 -19.51758 -18.65588 -17.82673
-17.66110 -17.20822 -16.81100 -16.74418 -16.56651 -16.17600 -16.09087 -15.54748
-15.39138 -15.18059 -14.78849 -14.77407 -14.53858 -14.45001 -14.35131 -14.14007
-13.86718 -13.64647 -13.42044 -13.23549 -13.09123 -13.00845 -12.95955 -12.87347
-12.68008 -12.61565 -12.41715 -12.25219 -12.10102 -11.90707 -11.86519 -11.52895
-11.51281 -10.94172 -10.83968 -10.80326 -10.54966 -9.90324 -9.18079 -8.29639
-8.26851 -6.46282 0.34079 0.68489 1.43955 1.47536 1.55717 1.60444
1.62914 1.96915 2.13669 2.39257 2.74879 2.93281 3.05606 3.52988
3.80750 3.81629 3.92218 3.95397 4.13162 4.22072 4.27306 4.34035
4.38912 4.45215 4.61606 4.70306 4.72476 4.73754 4.81599 4.83310
4.83744 4.95964 4.96158 5.01025 5.08561 5.12120 5.22217 5.24153
5.25444 5.34901 5.35402 5.43677 5.45888 5.50598 5.62615 5.67561
5.82736 5.95434 6.33434 6.45680 6.63167 6.68315 6.83546 7.14056
7.21638 7.39135 8.82082
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.011600 B = 0.002005 C = 0.001738
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2413.268153 B =13961.999581 C =16105.994916
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.104 4.104
2 C -0.186 4.186
3 C -0.058 4.058
4 C -0.191 4.191
5 C 0.180 3.820
6 N -0.660 5.660
7 C 0.517 3.483
8 O -0.559 6.559
9 C -0.079 4.079
10 C -0.129 4.129
11 C -0.142 4.142
12 C -0.140 4.140
13 C -0.224 4.224
14 C 0.229 3.771
15 N -0.738 5.738
16 C 0.118 3.882
17 C 0.491 3.509
18 O -0.597 6.597
19 N -0.699 5.699
20 C 0.266 3.734
21 C -0.556 4.556
22 H 0.087 0.913
23 C 0.003 3.997
24 N -0.931 5.931
25 Si 0.984 3.016
26 H -0.262 1.262
27 H -0.288 1.288
28 H -0.261 1.261
29 H 0.064 0.936
30 H 0.081 0.919
31 H 0.052 0.948
32 H 0.138 0.862
33 H 0.117 0.883
34 H 0.424 0.576
35 H 0.046 0.954
36 H 0.087 0.913
37 H 0.049 0.951
38 H 0.075 0.925
39 H 0.090 0.910
40 H 0.050 0.950
41 H 0.052 0.948
42 H 0.090 0.910
43 H 0.073 0.927
44 H 0.146 0.854
45 H 0.405 0.595
46 H 0.117 0.883
47 H 0.112 0.888
48 H 0.413 0.587
49 H -0.012 1.012
50 H -0.010 1.010
51 H 0.268 0.732
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 21.435 22.283 -2.222 30.999
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C -0.191 4.191
3 C -0.077 4.077
4 C -0.214 4.214
5 C 0.085 3.915
6 N -0.305 5.305
7 C 0.306 3.694
8 O -0.436 6.436
9 C -0.082 4.082
10 C -0.186 4.186
11 C -0.200 4.200
12 C -0.197 4.197
13 C -0.249 4.249
14 C 0.124 3.876
15 N -0.371 5.371
16 C -0.010 4.010
17 C 0.278 3.722
18 O -0.479 6.479
19 N -0.349 5.349
20 C 0.143 3.857
21 C -0.594 4.594
22 H 0.105 0.895
23 C -0.197 4.197
24 N -0.569 5.569
25 Si 0.807 3.193
26 H -0.186 1.186
27 H -0.214 1.214
28 H -0.185 1.185
29 H 0.083 0.917
30 H 0.100 0.900
31 H 0.071 0.929
32 H 0.156 0.844
33 H 0.135 0.865
34 H 0.263 0.737
35 H 0.065 0.935
36 H 0.106 0.894
37 H 0.068 0.932
38 H 0.094 0.906
39 H 0.109 0.891
40 H 0.069 0.931
41 H 0.071 0.929
42 H 0.109 0.891
43 H 0.092 0.908
44 H 0.164 0.836
45 H 0.244 0.756
46 H 0.135 0.865
47 H 0.130 0.870
48 H 0.249 0.751
49 H 0.006 0.994
50 H 0.008 0.992
51 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges 20.201 22.706 -1.762 30.443
hybrid contribution -0.321 -1.279 -0.020 1.319
sum 19.880 21.427 -1.782 29.283
Atomic orbital electron populations
1.20585 0.90641 1.02706 1.02110 1.19566 0.96619 0.91655 1.11257
1.20795 0.93266 0.97289 0.96344 1.20849 0.94343 0.97148 1.09011
1.17464 0.83000 0.93337 0.97673 1.43500 1.04089 1.29359 1.53594
1.21477 0.91301 0.79641 0.76956 1.90708 1.71105 1.41096 1.40708
1.20876 0.88110 0.99518 0.99736 1.21694 1.01889 0.95923 0.99121
1.21935 1.02750 0.94329 1.00961 1.21907 1.03745 1.02650 0.91410
1.20395 0.91928 0.97746 1.14848 1.17455 0.91040 0.85230 0.93847
1.44543 1.09035 1.01543 1.81955 1.21119 0.93100 0.81147 1.05632
1.21255 0.89707 0.85294 0.75930 1.90641 1.19259 1.85226 1.52817
1.46083 1.11548 1.05169 1.72126 1.18570 0.88675 0.84187 0.94264
1.21594 0.94430 0.90439 1.52941 0.89503 1.26068 0.95766 1.03946
0.93909 1.70124 1.08284 1.28624 1.49892 0.85214 0.77897 0.76615
0.79547 1.18634 1.21380 1.18539 0.91687 0.90045 0.92880 0.84392
0.86489 0.73714 0.93458 0.89399 0.93210 0.90630 0.89096 0.93075
0.92920 0.89097 0.90812 0.83590 0.75627 0.86495 0.86992 0.75096
0.99360 0.99246 0.92288
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -2.25 9.56 71.24 0.68 -1.56 16
2 C -0.19 -4.50 5.90 -19.71 -0.12 -4.62 16
3 C -0.06 -1.33 9.69 22.23 0.22 -1.12 16
4 C -0.19 -4.68 8.65 22.42 0.19 -4.49 16
5 C 0.18 3.93 6.27 38.14 0.24 4.16 16
6 N -0.66 -10.55 5.12 -303.57 -1.55 -12.10 16
7 C 0.52 9.64 6.22 87.66 0.54 10.18 16
8 O -0.56 -15.35 13.67 -3.06 -0.04 -15.39 16
9 C -0.08 -0.87 0.87 -52.93 -0.05 -0.92 16
10 C -0.13 -1.59 7.76 71.98 0.56 -1.03 16
11 C -0.14 -1.02 8.37 71.98 0.60 -0.42 16
12 C -0.14 -0.95 8.37 71.98 0.60 -0.35 16
13 C -0.22 -4.74 9.22 22.52 0.21 -4.54 16
14 C 0.23 5.66 6.63 38.20 0.25 5.92 16
15 N -0.74 -19.68 5.60 -343.19 -1.92 -21.60 16
16 C 0.12 2.85 5.39 85.63 0.46 3.32 16
17 C 0.49 18.01 7.90 87.66 0.69 18.70 16
18 O -0.60 -27.72 15.67 -3.04 -0.05 -27.77 16
19 N -0.70 -27.13 5.55 -466.79 -2.59 -29.72 16
20 C 0.27 13.99 5.43 85.63 0.46 14.45 16
21 C -0.56 -29.05 9.28 25.60 0.24 -28.81 16
22 H 0.09 4.02 7.60 -2.91 -0.02 4.00 16
23 C 0.00 0.15 5.46 84.66 0.46 0.62 16
24 N -0.93 -55.08 13.29 21.45 0.28 -54.79 16
25 Si 0.98 41.04 29.54 68.60 2.03 43.07 16
26 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16
27 H -0.29 -12.07 7.11 99.48 0.71 -11.36 16
28 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16
29 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16
30 H 0.08 1.45 8.09 -2.39 -0.02 1.43 16
31 H 0.05 1.25 6.54 -2.38 -0.02 1.23 16
32 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16
33 H 0.12 3.07 6.41 -2.91 -0.02 3.05 16
34 H 0.42 3.84 7.68 -92.70 -0.71 3.13 16
35 H 0.05 0.73 8.10 -2.39 -0.02 0.71 16
36 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16
37 H 0.05 0.74 8.10 -2.39 -0.02 0.72 16
38 H 0.07 0.34 7.45 -2.39 -0.02 0.32 16
39 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16
40 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16
41 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16
42 H 0.09 0.30 8.14 -2.38 -0.02 0.28 16
43 H 0.07 0.33 7.69 -2.39 -0.02 0.32 16
44 H 0.15 2.33 6.73 -2.91 -0.02 2.31 16
45 H 0.41 12.31 5.43 -92.71 -0.50 11.81 16
46 H 0.12 2.16 7.95 -2.39 -0.02 2.14 16
47 H 0.11 2.19 7.95 -2.39 -0.02 2.17 16
48 H 0.41 12.58 8.32 -92.71 -0.77 11.81 16
49 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16
50 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16
51 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16
Total: -1.00 -76.64 416.26 1.39 -75.25
By element:
Atomic # 1 Polarization: 34.58 SS G_CDS: -1.02 Total: 33.55 kcal
Atomic # 6 Polarization: 3.24 SS G_CDS: 6.26 Total: 9.50 kcal
Atomic # 7 Polarization: -112.43 SS G_CDS: -5.78 Total: -118.21 kcal
Atomic # 8 Polarization: -43.07 SS G_CDS: -0.09 Total: -43.16 kcal
Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal
Total: -76.64 1.39 -75.25 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000759777624.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -12.054 kcal
(2) G-P(sol) polarization free energy of solvation -76.639 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.692 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.388 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.250 kcal
(6) G-S(sol) free energy of system = (1) + (5) -87.304 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds