Wall clock time and date at job start Wed Apr 1 2020 04:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38252 * 120.00117 * 2 1 4 4 C 1.38214 * 120.00263 * 180.02562 * 3 2 1 5 5 C 1.38260 * 119.99688 * 359.85595 * 4 3 2 6 6 C 1.38218 * 120.00107 * 0.09931 * 5 4 3 7 7 C 1.50700 * 119.99766 * 179.97438 * 6 5 4 8 8 H 1.08997 * 109.46802 * 204.99689 * 7 6 5 9 9 O 1.42894 * 109.47571 * 324.99796 * 7 6 5 10 10 C 1.53004 * 109.46916 * 85.00165 * 7 6 5 11 11 N 1.46501 * 109.46694 * 179.97438 * 10 7 6 12 12 C 1.34781 * 119.99610 * 179.97438 * 11 10 7 13 13 O 1.21583 * 119.99949 * 0.02562 * 12 11 10 14 14 N 1.34782 * 119.99506 * 179.97438 * 12 11 10 15 15 C 1.46498 * 119.99283 * 179.97438 * 14 12 11 16 16 C 1.53043 * 109.46136 * 275.02780 * 15 14 12 17 17 C 1.53195 * 109.31210 * 178.60402 * 16 15 14 18 18 N 1.46931 * 108.76682 * 54.65822 * 17 16 15 19 19 C 1.36934 * 120.63149 * 126.40230 * 18 17 16 20 20 H 1.07992 * 120.00350 * 331.82665 * 19 18 17 21 21 C 1.38812 * 119.99878 * 151.82717 * 19 18 17 22 22 N 1.31621 * 119.99913 * 343.07196 * 21 19 18 23 23 Si 1.86798 * 120.00226 * 163.07358 * 21 19 18 24 24 H 1.48499 * 109.47213 * 90.00064 * 23 21 19 25 25 H 1.48499 * 109.47145 * 210.00169 * 23 21 19 26 26 H 1.48502 * 109.46891 * 329.99928 * 23 21 19 27 27 C 1.46932 * 118.73494 * 306.38476 * 18 17 16 28 28 C 1.53050 * 109.45729 * 154.97701 * 15 14 12 29 29 C 1.38215 * 119.99721 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.46759 * 270.02222 * 1 2 3 31 31 H 1.08993 * 109.47157 * 30.02226 * 1 2 3 32 32 H 1.08998 * 109.47548 * 150.02419 * 1 2 3 33 33 H 1.07999 * 120.00287 * 359.97438 * 3 2 1 34 34 H 1.07993 * 120.00152 * 179.97438 * 4 3 2 35 35 H 1.08003 * 119.99931 * 180.36901 * 5 4 3 36 36 H 0.96698 * 113.99944 * 59.99748 * 9 7 6 37 37 H 1.08997 * 109.46997 * 299.99405 * 10 7 6 38 38 H 1.08999 * 109.47053 * 59.99933 * 10 7 6 39 39 H 0.96995 * 120.00606 * 0.02562 * 11 10 7 40 40 H 0.96988 * 120.00339 * 0.02562 * 14 12 11 41 41 H 1.09001 * 109.46574 * 35.00378 * 15 14 12 42 42 H 1.09001 * 109.50086 * 298.56633 * 16 15 14 43 43 H 1.08993 * 109.49812 * 58.66982 * 16 15 14 44 44 H 1.08994 * 109.60182 * 294.87024 * 17 16 15 45 45 H 1.09001 * 109.70282 * 174.50242 * 17 16 15 46 46 H 0.97007 * 120.00059 * 179.97438 * 22 21 19 47 47 H 1.09001 * 109.58081 * 293.81751 * 27 18 17 48 48 H 1.08997 * 109.70021 * 173.46700 * 27 18 17 49 49 H 1.08998 * 109.49362 * 301.33261 * 28 15 14 50 50 H 1.08992 * 109.49895 * 61.40082 * 28 15 14 51 51 H 1.07994 * 120.00302 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 -0.0001 0.0019 6 6 3.5806 -1.1971 0.0029 7 6 4.3341 -2.5021 0.0050 8 1 3.7095 -3.2830 -0.4288 9 8 5.5286 -2.3639 -0.7671 10 6 4.6969 -2.8792 1.4428 11 7 5.4289 -4.1482 1.4448 12 6 5.8535 -4.6793 2.6086 13 8 5.6285 -4.1055 3.6566 14 7 6.5265 -5.8471 2.6105 15 6 6.9884 -6.4241 3.8753 16 6 8.3399 -5.8124 4.2514 17 6 8.8031 -6.3921 5.5916 18 7 8.8106 -7.8582 5.4951 19 6 9.9354 -8.5725 5.8107 20 1 10.9108 -8.1245 5.6913 21 6 9.8221 -9.8725 6.2841 22 7 8.6680 -10.3070 6.7442 23 14 11.3074 -11.0051 6.2683 24 1 12.0481 -10.8681 7.5480 25 1 10.8564 -12.4106 6.1055 26 1 12.1984 -10.6372 5.1386 27 6 7.5879 -8.5434 5.0539 28 6 7.1382 -7.9393 3.7199 29 6 2.1980 -1.1970 0.0005 30 1 -0.3633 0.0004 1.0277 31 1 -0.3633 0.8897 -0.5141 32 1 -0.3634 -0.8902 -0.5134 33 1 1.6583 2.1326 -0.0004 34 1 4.1204 2.1326 -0.0010 35 1 5.3517 -0.0001 0.0075 36 1 6.1332 -1.6848 -0.4380 37 1 5.3216 -2.0984 1.8765 38 1 3.7858 -2.9847 2.0316 39 1 5.6087 -4.6058 0.6087 40 1 6.7056 -6.3050 1.7745 41 1 6.2620 -6.2095 4.6592 42 1 9.0732 -6.0479 3.4800 43 1 8.2379 -4.7307 4.3390 44 1 8.1184 -6.0814 6.3806 45 1 9.8079 -6.0358 5.8185 46 1 8.5886 -11.2156 7.0747 47 1 6.8041 -8.4080 5.7992 48 1 7.7891 -9.6067 4.9242 49 1 6.1808 -8.3715 3.4292 50 1 7.8824 -8.1545 2.9533 51 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767944142.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:51 Heat of formation + Delta-G solvation = -43.156920 kcal Electronic energy + Delta-G solvation = -29787.238483 eV Core-core repulsion = 25686.520278 eV Total energy + Delta-G solvation = -4100.718204 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.41508 -39.76181 -37.88500 -37.21932 -34.47209 -34.20273 -33.15466 -32.24789 -31.84971 -30.12038 -29.46195 -28.12076 -27.32596 -25.02965 -23.84470 -22.61762 -22.23198 -21.86498 -21.02973 -20.44530 -19.38855 -18.18840 -17.85151 -16.85232 -16.52205 -16.45313 -15.84980 -15.37111 -15.16658 -14.84418 -14.56003 -14.43451 -14.30960 -14.07417 -13.83711 -13.61759 -13.52511 -13.50625 -13.02927 -12.86272 -12.66342 -12.60040 -12.39386 -12.29212 -12.08671 -11.61935 -11.42129 -11.37660 -11.09558 -10.82326 -10.68856 -10.63773 -10.46963 -10.24242 -10.02351 -9.99247 -9.72310 -9.51259 -9.24831 -9.17023 -9.04367 -8.56757 -8.40836 -6.65509 -5.77534 -3.19375 0.85721 0.95641 2.76529 3.28975 3.38619 3.39742 3.45546 3.47922 3.94329 4.09171 4.33836 4.43101 4.44758 4.51405 4.56141 4.67066 4.73568 4.90633 5.01325 5.17682 5.19350 5.35245 5.36803 5.41945 5.47234 5.52449 5.54951 5.58407 5.65417 5.70343 5.93902 6.02026 6.08957 6.12280 6.15838 6.32866 6.39048 6.40576 6.53711 6.55705 6.61296 6.65089 6.83965 6.94224 7.02640 7.09670 7.15643 7.34988 7.64663 7.81333 8.18659 8.46848 8.78832 9.23018 9.86419 10.43764 11.31424 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.030903 B = 0.001630 C = 0.001612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.855030 B =17174.037378 C =17360.547400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.084 4.084 3 C -0.119 4.119 4 C -0.112 4.112 5 C -0.114 4.114 6 C -0.111 4.111 7 C 0.139 3.861 8 H 0.114 0.886 9 O -0.551 6.551 10 C 0.115 3.885 11 N -0.748 5.748 12 C 0.701 3.299 13 O -0.592 6.592 14 N -0.738 5.738 15 C 0.169 3.831 16 C -0.139 4.139 17 C 0.147 3.853 18 N -0.593 5.593 19 C -0.251 4.251 20 H 0.065 0.935 21 C 0.001 3.999 22 N -0.903 5.903 23 Si 0.902 3.098 24 H -0.287 1.287 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.175 3.825 28 C -0.146 4.146 29 C -0.108 4.108 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.121 0.879 36 H 0.377 0.623 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.398 0.602 40 H 0.391 0.609 41 H 0.081 0.919 42 H 0.057 0.943 43 H 0.054 0.946 44 H 0.020 0.980 45 H 0.055 0.945 46 H 0.254 0.746 47 H 0.021 0.979 48 H 0.091 0.909 49 H 0.053 0.947 50 H 0.059 0.941 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.347 20.437 -18.386 31.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.084 4.084 3 C -0.137 4.137 4 C -0.130 4.130 5 C -0.132 4.132 6 C -0.111 4.111 7 C 0.079 3.921 8 H 0.132 0.868 9 O -0.357 6.357 10 C -0.010 4.010 11 N -0.405 5.405 12 C 0.401 3.599 13 O -0.470 6.470 14 N -0.392 5.392 15 C 0.065 3.935 16 C -0.179 4.179 17 C 0.020 3.980 18 N -0.315 5.315 19 C -0.381 4.381 20 H 0.083 0.917 21 C -0.197 4.197 22 N -0.548 5.548 23 Si 0.732 3.268 24 H -0.214 1.214 25 H -0.216 1.216 26 H -0.205 1.205 27 C 0.048 3.952 28 C -0.186 4.186 29 C -0.126 4.126 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.139 0.861 36 H 0.226 0.774 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.232 0.768 40 H 0.224 0.776 41 H 0.099 0.901 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.038 0.962 45 H 0.074 0.926 46 H 0.064 0.936 47 H 0.039 0.961 48 H 0.109 0.891 49 H 0.072 0.928 50 H 0.078 0.922 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -14.857 20.315 -17.647 30.738 hybrid contribution 1.096 -0.503 -0.419 1.276 sum -13.762 19.812 -18.066 30.138 Atomic orbital electron populations 1.20816 0.90972 1.02899 1.02601 1.19933 0.96248 0.93044 0.99172 1.21092 0.94329 0.97620 1.00684 1.21113 0.94325 0.97965 0.99596 1.20863 0.99819 0.92012 1.00532 1.20321 0.94378 0.95248 1.01203 1.21040 0.86083 0.94183 0.90759 0.86805 1.86621 1.31321 1.61957 1.55799 1.21775 0.97336 0.85919 0.95986 1.44983 1.62218 1.25140 1.08187 1.16011 0.78698 0.81391 0.83781 1.90922 1.62858 1.62700 1.30558 1.45534 1.59857 1.22843 1.10927 1.20910 0.95736 0.93017 0.83845 1.22387 0.96270 0.99026 1.00258 1.20880 0.98658 0.85605 0.92817 1.44089 1.11146 0.99748 1.76548 1.19179 0.85811 0.95938 1.37163 0.91697 1.25051 0.96816 0.99461 0.98378 1.70030 1.24079 1.17066 1.43617 0.86307 0.82380 0.80237 0.77906 1.21407 1.21591 1.20529 1.20737 0.87527 0.98057 0.88875 1.22543 1.00190 0.93155 1.02720 1.20879 0.93164 0.97985 1.00535 0.90920 0.91474 0.91386 0.85993 0.85787 0.86088 0.77403 0.91299 0.90661 0.76764 0.77579 0.90117 0.92464 0.92768 0.96188 0.92619 0.93633 0.96105 0.89056 0.92792 0.92225 0.85752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.58 10.01 36.01 0.36 -0.22 16 2 C -0.08 -0.59 5.88 -104.63 -0.62 -1.21 16 3 C -0.12 -0.81 9.70 -39.58 -0.38 -1.19 16 4 C -0.11 -0.76 10.05 -39.58 -0.40 -1.16 16 5 C -0.11 -0.81 9.33 -39.58 -0.37 -1.18 16 6 C -0.11 -0.84 5.00 -104.62 -0.52 -1.36 16 7 C 0.14 1.01 3.30 -27.88 -0.09 0.92 16 8 H 0.11 0.76 8.05 -51.93 -0.42 0.34 16 9 O -0.55 -4.17 12.88 -35.23 -0.45 -4.63 16 10 C 0.12 1.10 5.32 -4.04 -0.02 1.08 16 11 N -0.75 -8.09 5.45 -65.22 -0.36 -8.45 16 12 C 0.70 10.70 8.53 -86.91 -0.74 9.95 16 13 O -0.59 -11.63 16.00 5.29 0.08 -11.55 16 14 N -0.74 -10.70 5.08 -58.63 -0.30 -11.00 16 15 C 0.17 3.02 2.42 -67.88 -0.16 2.86 16 16 C -0.14 -2.62 5.65 -26.61 -0.15 -2.77 16 17 C 0.15 3.24 6.52 -3.71 -0.02 3.21 16 18 N -0.59 -14.96 2.99 -172.32 -0.52 -15.48 16 19 C -0.25 -6.92 9.58 -15.06 -0.14 -7.06 16 20 H 0.07 1.76 7.88 -52.49 -0.41 1.34 16 21 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 22 N -0.90 -26.19 11.19 55.49 0.62 -25.57 16 23 Si 0.90 21.63 29.59 -169.99 -5.03 16.60 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 C 0.17 4.14 5.30 -3.71 -0.02 4.12 16 28 C -0.15 -2.71 5.55 -26.61 -0.15 -2.86 16 29 C -0.11 -0.80 9.34 -39.58 -0.37 -1.17 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.27 8.09 -51.93 -0.42 -0.15 16 32 H 0.07 0.29 8.09 -51.93 -0.42 -0.12 16 33 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 34 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 35 H 0.12 0.63 6.62 -52.48 -0.35 0.28 16 36 H 0.38 1.96 7.39 45.56 0.34 2.30 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.40 3.43 8.36 -40.82 -0.34 3.09 16 40 H 0.39 4.56 8.62 -40.82 -0.35 4.21 16 41 H 0.08 1.64 7.57 -51.93 -0.39 1.25 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 46 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 47 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.09 2.39 6.07 -51.93 -0.31 2.08 16 49 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 50 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 51 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 LS Contribution 411.33 15.07 6.20 6.20 Total: -1.00 -33.90 411.33 -11.34 -45.24 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -7.70 Total: 6.69 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: -3.89 Total: 1.93 kcal Atomic # 7 Polarization: -59.95 SS G_CDS: -0.55 Total: -60.49 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.37 Total: -16.17 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.90 -11.34 -45.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767944142.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.086 kcal (2) G-P(sol) polarization free energy of solvation -33.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds