Wall clock time and date at job start Wed Apr 1 2020 04:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38252 * 120.00117 * 2 1 4 4 C 1.38214 * 120.00263 * 180.02562 * 3 2 1 5 5 C 1.38260 * 119.99688 * 359.85595 * 4 3 2 6 6 C 1.38218 * 120.00107 * 0.09931 * 5 4 3 7 7 C 1.50700 * 119.99766 * 179.97438 * 6 5 4 8 8 H 1.08997 * 109.46802 * 204.99689 * 7 6 5 9 9 O 1.42894 * 109.47571 * 324.99796 * 7 6 5 10 10 C 1.53004 * 109.46916 * 85.00165 * 7 6 5 11 11 N 1.46501 * 109.46694 * 179.97438 * 10 7 6 12 12 C 1.34781 * 119.99610 * 179.97438 * 11 10 7 13 13 O 1.21583 * 119.99949 * 0.02562 * 12 11 10 14 14 N 1.34782 * 119.99506 * 179.97438 * 12 11 10 15 15 C 1.46498 * 119.99283 * 179.97438 * 14 12 11 16 16 C 1.53043 * 109.46136 * 275.02780 * 15 14 12 17 17 C 1.53195 * 109.31210 * 178.60402 * 16 15 14 18 18 N 1.46931 * 108.76682 * 54.65822 * 17 16 15 19 19 C 1.36934 * 120.63149 * 126.40230 * 18 17 16 20 20 H 1.07992 * 120.00350 * 331.82665 * 19 18 17 21 21 C 1.38812 * 119.99878 * 151.82717 * 19 18 17 22 22 N 1.31621 * 119.99913 * 343.07196 * 21 19 18 23 23 Si 1.86798 * 120.00226 * 163.07358 * 21 19 18 24 24 H 1.48499 * 109.47213 * 90.00064 * 23 21 19 25 25 H 1.48499 * 109.47145 * 210.00169 * 23 21 19 26 26 H 1.48502 * 109.46891 * 329.99928 * 23 21 19 27 27 C 1.46932 * 118.73494 * 306.38476 * 18 17 16 28 28 C 1.53050 * 109.45729 * 154.97701 * 15 14 12 29 29 C 1.38215 * 119.99721 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.46759 * 270.02222 * 1 2 3 31 31 H 1.08993 * 109.47157 * 30.02226 * 1 2 3 32 32 H 1.08998 * 109.47548 * 150.02419 * 1 2 3 33 33 H 1.07999 * 120.00287 * 359.97438 * 3 2 1 34 34 H 1.07993 * 120.00152 * 179.97438 * 4 3 2 35 35 H 1.08003 * 119.99931 * 180.36901 * 5 4 3 36 36 H 0.96698 * 113.99944 * 59.99748 * 9 7 6 37 37 H 1.08997 * 109.46997 * 299.99405 * 10 7 6 38 38 H 1.08999 * 109.47053 * 59.99933 * 10 7 6 39 39 H 0.96995 * 120.00606 * 0.02562 * 11 10 7 40 40 H 0.96988 * 120.00339 * 0.02562 * 14 12 11 41 41 H 1.09001 * 109.46574 * 35.00378 * 15 14 12 42 42 H 1.09001 * 109.50086 * 298.56633 * 16 15 14 43 43 H 1.08993 * 109.49812 * 58.66982 * 16 15 14 44 44 H 1.08994 * 109.60182 * 294.87024 * 17 16 15 45 45 H 1.09001 * 109.70282 * 174.50242 * 17 16 15 46 46 H 0.97007 * 120.00059 * 179.97438 * 22 21 19 47 47 H 1.09001 * 109.58081 * 293.81751 * 27 18 17 48 48 H 1.08997 * 109.70021 * 173.46700 * 27 18 17 49 49 H 1.08998 * 109.49362 * 301.33261 * 28 15 14 50 50 H 1.08992 * 109.49895 * 61.40082 * 28 15 14 51 51 H 1.07994 * 120.00302 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 -0.0001 0.0019 6 6 3.5806 -1.1971 0.0029 7 6 4.3341 -2.5021 0.0050 8 1 3.7095 -3.2830 -0.4288 9 8 5.5286 -2.3639 -0.7671 10 6 4.6969 -2.8792 1.4428 11 7 5.4289 -4.1482 1.4448 12 6 5.8535 -4.6793 2.6086 13 8 5.6285 -4.1055 3.6566 14 7 6.5265 -5.8471 2.6105 15 6 6.9884 -6.4241 3.8753 16 6 8.3399 -5.8124 4.2514 17 6 8.8031 -6.3921 5.5916 18 7 8.8106 -7.8582 5.4951 19 6 9.9354 -8.5725 5.8107 20 1 10.9108 -8.1245 5.6913 21 6 9.8221 -9.8725 6.2841 22 7 8.6680 -10.3070 6.7442 23 14 11.3074 -11.0051 6.2683 24 1 12.0481 -10.8681 7.5480 25 1 10.8564 -12.4106 6.1055 26 1 12.1984 -10.6372 5.1386 27 6 7.5879 -8.5434 5.0539 28 6 7.1382 -7.9393 3.7199 29 6 2.1980 -1.1970 0.0005 30 1 -0.3633 0.0004 1.0277 31 1 -0.3633 0.8897 -0.5141 32 1 -0.3634 -0.8902 -0.5134 33 1 1.6583 2.1326 -0.0004 34 1 4.1204 2.1326 -0.0010 35 1 5.3517 -0.0001 0.0075 36 1 6.1332 -1.6848 -0.4380 37 1 5.3216 -2.0984 1.8765 38 1 3.7858 -2.9847 2.0316 39 1 5.6087 -4.6058 0.6087 40 1 6.7056 -6.3050 1.7745 41 1 6.2620 -6.2095 4.6592 42 1 9.0732 -6.0479 3.4800 43 1 8.2379 -4.7307 4.3390 44 1 8.1184 -6.0814 6.3806 45 1 9.8079 -6.0358 5.8185 46 1 8.5886 -11.2156 7.0747 47 1 6.8041 -8.4080 5.7992 48 1 7.7891 -9.6067 4.9242 49 1 6.1808 -8.3715 3.4292 50 1 7.8824 -8.1545 2.9533 51 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767944142.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:49 Heat of formation + Delta-G solvation = -66.639236 kcal Electronic energy + Delta-G solvation = -29788.256752 eV Core-core repulsion = 25686.520278 eV Total energy + Delta-G solvation = -4101.736474 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -41.31648 -40.63303 -39.16039 -38.20643 -36.00210 -35.31527 -33.88065 -33.60353 -32.62070 -31.77059 -31.14982 -29.01357 -27.75898 -26.82307 -24.75627 -23.91230 -23.47195 -23.11186 -21.90893 -21.37158 -21.01931 -19.43104 -18.71258 -18.37998 -17.43413 -17.16991 -16.88484 -16.67805 -16.28790 -15.92865 -15.68264 -15.41330 -15.36990 -15.29331 -15.04965 -14.74994 -14.63944 -14.45116 -14.33477 -14.03496 -13.99206 -13.49348 -13.18698 -13.11863 -13.00574 -12.99299 -12.60288 -12.58098 -12.50520 -12.22887 -12.13473 -12.01199 -11.86831 -11.86257 -11.55729 -11.42771 -11.30155 -11.10784 -10.55055 -10.33377 -9.77210 -9.72714 -9.54162 -8.69809 -7.86992 -5.32579 0.33755 0.45615 1.49029 1.50193 1.60365 1.69101 2.17695 2.52934 2.76112 3.21898 3.30919 3.41184 3.65676 3.69233 3.83526 3.88027 3.92045 4.03145 4.07711 4.14730 4.23195 4.35697 4.47424 4.49012 4.51725 4.63260 4.66279 4.70834 4.82440 4.82769 4.86749 4.87684 4.98260 5.03484 5.07587 5.11678 5.17110 5.28903 5.30590 5.43522 5.48341 5.53516 5.57892 5.61457 5.65557 5.67553 5.71175 6.04020 6.08587 6.39854 6.63443 7.14020 7.15309 7.61821 7.84757 8.38067 9.20205 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.030903 B = 0.001630 C = 0.001612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.855030 B =17174.037378 C =17360.547400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.097 4.097 3 C -0.130 4.130 4 C -0.122 4.122 5 C -0.126 4.126 6 C -0.122 4.122 7 C 0.156 3.844 8 H 0.123 0.877 9 O -0.558 6.558 10 C 0.118 3.882 11 N -0.727 5.727 12 C 0.699 3.301 13 O -0.638 6.638 14 N -0.726 5.726 15 C 0.181 3.819 16 C -0.123 4.123 17 C 0.144 3.856 18 N -0.608 5.608 19 C -0.264 4.264 20 H 0.067 0.933 21 C -0.050 4.050 22 N -0.936 5.936 23 Si 0.969 3.031 24 H -0.287 1.287 25 H -0.291 1.291 26 H -0.269 1.269 27 C 0.178 3.822 28 C -0.127 4.127 29 C -0.122 4.122 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.136 0.864 36 H 0.387 0.613 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.413 0.587 40 H 0.410 0.590 41 H 0.054 0.946 42 H 0.066 0.934 43 H 0.057 0.943 44 H 0.006 0.994 45 H 0.057 0.943 46 H 0.251 0.749 47 H -0.006 1.006 48 H 0.064 0.936 49 H 0.076 0.924 50 H 0.071 0.929 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.138 21.197 -20.742 32.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.097 4.097 3 C -0.147 4.147 4 C -0.140 4.140 5 C -0.144 4.144 6 C -0.123 4.123 7 C 0.096 3.904 8 H 0.141 0.859 9 O -0.366 6.366 10 C -0.007 4.007 11 N -0.384 5.384 12 C 0.399 3.601 13 O -0.520 6.520 14 N -0.380 5.380 15 C 0.076 3.924 16 C -0.163 4.163 17 C 0.018 3.982 18 N -0.332 5.332 19 C -0.394 4.394 20 H 0.085 0.915 21 C -0.245 4.245 22 N -0.582 5.582 23 Si 0.797 3.203 24 H -0.214 1.214 25 H -0.217 1.217 26 H -0.194 1.194 27 C 0.052 3.948 28 C -0.167 4.167 29 C -0.140 4.140 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.155 0.845 34 H 0.158 0.842 35 H 0.154 0.846 36 H 0.238 0.762 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.250 0.750 40 H 0.246 0.754 41 H 0.073 0.927 42 H 0.085 0.915 43 H 0.075 0.925 44 H 0.024 0.976 45 H 0.076 0.924 46 H 0.060 0.940 47 H 0.012 0.988 48 H 0.082 0.918 49 H 0.095 0.905 50 H 0.089 0.911 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -14.647 21.101 -20.084 32.606 hybrid contribution 0.991 -0.635 0.342 1.226 sum -13.656 20.466 -19.742 31.545 Atomic orbital electron populations 1.20844 0.89745 1.03662 1.02930 1.20236 0.97372 0.93091 0.98981 1.21394 0.94672 0.98319 1.00359 1.21407 0.94629 0.98664 0.99303 1.21140 1.00798 0.92062 1.00408 1.20400 0.94596 0.95438 1.01886 1.20861 0.86103 0.94426 0.89019 0.85911 1.86602 1.31558 1.62518 1.55885 1.21839 0.96435 0.84879 0.97593 1.44794 1.60986 1.25223 1.07423 1.16149 0.78549 0.81216 0.84177 1.90902 1.64546 1.63925 1.32594 1.45118 1.59629 1.22815 1.10458 1.20488 0.94598 0.92594 0.84754 1.22177 0.96847 0.98872 0.98426 1.20968 0.98638 0.84185 0.94391 1.44340 1.10996 1.00925 1.76921 1.19515 0.86676 0.96479 1.36753 0.91502 1.25823 0.99480 1.00826 0.98379 1.70189 1.26087 1.17114 1.44760 0.85255 0.79169 0.77900 0.77958 1.21370 1.21748 1.19375 1.20567 0.86422 0.96946 0.90848 1.22256 1.01476 0.93276 0.99698 1.21117 0.93410 0.98703 1.00748 0.90730 0.90525 0.90862 0.84472 0.84173 0.84616 0.76230 0.92109 0.91722 0.75018 0.75407 0.92726 0.91544 0.92457 0.97597 0.92402 0.94015 0.98790 0.91776 0.90519 0.91061 0.84837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.00 10.01 71.24 0.71 -0.29 16 2 C -0.10 -1.26 5.88 -19.87 -0.12 -1.38 16 3 C -0.13 -1.60 9.70 22.27 0.22 -1.39 16 4 C -0.12 -1.50 10.05 22.27 0.22 -1.28 16 5 C -0.13 -1.63 9.33 22.27 0.21 -1.42 16 6 C -0.12 -1.70 5.00 -19.86 -0.10 -1.80 16 7 C 0.16 1.99 3.30 29.85 0.10 2.09 16 8 H 0.12 1.37 8.05 -2.39 -0.02 1.35 16 9 O -0.56 -7.19 12.88 -148.98 -1.92 -9.11 16 10 C 0.12 2.10 5.32 86.38 0.46 2.56 16 11 N -0.73 -14.27 5.45 -478.53 -2.61 -16.88 16 12 C 0.70 20.28 8.53 179.05 1.53 21.81 16 13 O -0.64 -24.84 16.00 -3.98 -0.06 -24.90 16 14 N -0.73 -19.49 5.08 -457.66 -2.33 -21.82 16 15 C 0.18 6.31 2.42 45.02 0.11 6.42 16 16 C -0.12 -4.51 5.65 30.67 0.17 -4.33 16 17 C 0.14 6.39 6.52 86.36 0.56 6.95 16 18 N -0.61 -31.05 2.99 -699.09 -2.09 -33.14 16 19 C -0.26 -14.61 9.58 84.03 0.81 -13.80 16 20 H 0.07 3.60 7.88 -2.91 -0.02 3.57 16 21 C -0.05 -2.78 4.92 84.86 0.42 -2.36 16 22 N -0.94 -55.39 11.19 21.65 0.24 -55.15 16 23 Si 0.97 44.63 29.59 68.60 2.03 46.65 16 24 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 25 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 26 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 27 C 0.18 8.60 5.30 86.36 0.46 9.06 16 28 C -0.13 -4.57 5.55 30.67 0.17 -4.40 16 29 C -0.12 -1.68 9.34 22.27 0.21 -1.47 16 30 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.08 0.50 8.09 -2.39 -0.02 0.48 16 32 H 0.07 0.55 8.09 -2.39 -0.02 0.53 16 33 H 0.14 1.16 8.06 -2.91 -0.02 1.13 16 34 H 0.14 1.15 8.06 -2.91 -0.02 1.12 16 35 H 0.14 1.20 6.62 -2.91 -0.02 1.18 16 36 H 0.39 3.19 7.39 -74.06 -0.55 2.64 16 37 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.41 5.89 8.36 -92.71 -0.78 5.11 16 40 H 0.41 8.20 8.62 -92.72 -0.80 7.40 16 41 H 0.05 2.23 7.57 -2.39 -0.02 2.21 16 42 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 45 H 0.06 2.48 7.93 -2.39 -0.02 2.46 16 46 H 0.25 14.33 8.31 -92.70 -0.77 13.56 16 47 H -0.01 -0.32 8.14 -2.39 -0.02 -0.33 16 48 H 0.06 3.44 6.07 -2.39 -0.01 3.42 16 49 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 50 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 51 H 0.13 1.46 8.06 -2.91 -0.02 1.44 16 Total: -1.00 -73.91 411.33 -1.77 -75.69 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: -1.17 Total: 23.68 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: 6.13 Total: 14.97 kcal Atomic # 7 Polarization: -120.20 SS G_CDS: -6.78 Total: -126.98 kcal Atomic # 8 Polarization: -32.03 SS G_CDS: -1.98 Total: -34.01 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -73.91 -1.77 -75.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767944142.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.047 kcal (2) G-P(sol) polarization free energy of solvation -73.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds