Wall clock time and date at job start Wed Apr 1 2020 05:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38376 * 119.92777 * 2 1 4 4 C 1.38335 * 120.29251 * 179.97438 * 3 2 1 5 5 C 1.37979 * 120.14744 * 0.28022 * 4 3 2 6 6 C 1.39560 * 119.84653 * 359.50983 * 5 4 3 7 7 C 1.47847 * 120.14072 * 180.25696 * 6 5 4 8 8 O 1.21554 * 119.99983 * 180.21092 * 7 6 5 9 9 N 1.34776 * 120.00511 * 0.20606 * 7 6 5 10 10 N 1.40096 * 120.00410 * 180.02562 * 9 7 6 11 11 C 1.34775 * 119.99830 * 180.02562 * 10 9 7 12 12 O 1.21276 * 120.00357 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99667 * 180.02562 * 11 10 9 14 14 N 1.46899 * 109.47008 * 187.58852 * 13 11 10 15 15 C 1.46906 * 111.00317 * 211.24621 * 14 13 11 16 16 C 1.50690 * 109.47245 * 164.21511 * 15 14 13 17 17 H 1.08001 * 120.00497 * 4.95168 * 16 15 14 18 18 C 1.37880 * 119.99834 * 184.94703 * 16 15 14 19 19 N 1.31517 * 119.99720 * 180.02562 * 18 16 15 20 20 Si 1.86793 * 120.00171 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47224 * 89.99732 * 20 18 16 22 22 H 1.48505 * 109.47297 * 210.00096 * 20 18 16 23 23 H 1.48505 * 109.47100 * 329.99624 * 20 18 16 24 24 C 1.46904 * 111.00107 * 87.29354 * 14 13 11 25 25 C 1.53000 * 109.47180 * 282.12544 * 24 14 13 26 26 C 1.52998 * 109.46960 * 173.92955 * 25 24 14 27 27 C 1.52995 * 109.47106 * 293.92784 * 25 24 14 28 28 C 1.37937 * 119.92706 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.47331 * 89.99956 * 1 2 3 30 30 H 1.08997 * 109.46930 * 210.00247 * 1 2 3 31 31 H 1.09008 * 109.46804 * 329.99712 * 1 2 3 32 32 H 1.08007 * 119.85565 * 0.02562 * 3 2 1 33 33 H 1.08008 * 119.92659 * 179.97438 * 4 3 2 34 34 H 1.07996 * 120.07828 * 179.72053 * 5 4 3 35 35 H 0.97001 * 119.99602 * 0.02562 * 9 7 6 36 36 H 0.97001 * 119.99987 * 0.02562 * 10 9 7 37 37 H 1.09000 * 109.47304 * 307.58865 * 13 11 10 38 38 H 1.08999 * 109.47450 * 67.58739 * 13 11 10 39 39 H 1.09005 * 109.47061 * 284.22073 * 15 14 13 40 40 H 1.09003 * 109.46715 * 44.21761 * 15 14 13 41 41 H 0.97003 * 119.99658 * 180.02562 * 19 18 16 42 42 H 1.09000 * 109.46923 * 42.12562 * 24 14 13 43 43 H 1.09004 * 109.47141 * 162.12359 * 24 14 13 44 44 H 1.08999 * 109.46680 * 53.92712 * 25 24 14 45 45 H 1.08993 * 109.47449 * 59.99912 * 26 25 24 46 46 H 1.08995 * 109.46897 * 180.02562 * 26 25 24 47 47 H 1.09011 * 109.47140 * 299.99891 * 26 25 24 48 48 H 1.09000 * 109.47157 * 301.73536 * 27 25 24 49 49 H 1.09001 * 109.46977 * 61.73465 * 27 25 24 50 50 H 1.08994 * 109.47045 * 181.73774 * 27 25 24 51 51 H 1.08000 * 120.06948 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1992 0.0000 4 6 3.5807 1.2080 0.0005 5 6 4.2813 0.0193 -0.0048 6 6 3.5911 -1.1936 -0.0003 7 6 4.3352 -2.4712 -0.0002 8 8 3.7315 -3.5262 -0.0002 9 7 5.6830 -2.4662 -0.0002 10 7 6.3881 -3.6767 -0.0007 11 6 7.7358 -3.6716 -0.0002 12 8 8.3382 -2.6190 0.0002 13 6 8.4943 -4.9738 -0.0012 14 7 9.9269 -4.7062 0.1825 15 6 10.7435 -5.7124 -0.5095 16 6 12.1592 -5.2112 -0.6342 17 1 12.4449 -4.2790 -0.1697 18 6 13.0897 -5.9429 -1.3412 19 7 14.3253 -5.5057 -1.4496 20 14 12.5954 -7.5549 -2.1451 21 1 12.1181 -7.2931 -3.5267 22 1 13.7678 -8.4653 -2.1905 23 1 11.5074 -8.1878 -1.3571 24 6 10.2713 -4.6392 1.6090 25 6 9.8430 -3.2834 2.1740 26 6 10.0624 -3.2695 3.6881 27 6 10.6767 -2.1752 1.5277 28 6 2.1952 -1.1954 -0.0005 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.6539 2.1326 0.0004 33 1 4.1136 2.1475 0.0001 34 1 5.3612 0.0275 -0.0089 35 1 6.1648 -1.6243 0.0001 36 1 5.9063 -4.5186 -0.0014 37 1 8.1351 -5.6041 0.8123 38 1 8.3389 -5.4840 -0.9518 39 1 10.7358 -6.6414 0.0608 40 1 10.3330 -5.8926 -1.5030 41 1 14.9799 -6.0202 -1.9474 42 1 9.7553 -5.4357 2.1451 43 1 11.3481 -4.7590 1.7289 44 1 8.7876 -3.1169 1.9581 45 1 11.1177 -3.4360 3.9039 46 1 9.7568 -2.3038 4.0906 47 1 9.4684 -4.0591 4.1486 48 1 11.7343 -2.3586 1.7174 49 1 10.4968 -2.1652 0.4527 50 1 10.3930 -1.2124 1.9526 51 1 1.6552 -2.1307 -0.0005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777588671.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:46 Heat of formation + Delta-G solvation = -7.504978 kcal Electronic energy + Delta-G solvation = -30393.938082 eV Core-core repulsion = 26294.765861 eV Total energy + Delta-G solvation = -4099.172220 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.78080 -39.71698 -38.65777 -37.04735 -35.25774 -34.09630 -33.53850 -32.44437 -31.90695 -30.94067 -28.54654 -27.34190 -26.78723 -26.41865 -24.57630 -23.74735 -22.29573 -21.45678 -20.91138 -20.29686 -19.28762 -18.14379 -17.82884 -16.91869 -16.62667 -16.08792 -15.97152 -15.64838 -15.34776 -15.05453 -14.53223 -14.27598 -14.21397 -14.16421 -13.93991 -13.90025 -13.55693 -13.50219 -12.95658 -12.68407 -12.59744 -12.43089 -12.37711 -12.05277 -11.92762 -11.73618 -11.51707 -11.46352 -11.22715 -11.03537 -10.88570 -10.61316 -10.48677 -10.27510 -10.02508 -9.94620 -9.79517 -9.66063 -9.43230 -9.27791 -9.18661 -8.57396 -8.38548 -7.46078 -6.04750 -4.01912 0.41213 0.90925 1.69153 2.38545 2.82944 3.26985 3.34391 3.35061 3.43664 3.78655 4.28366 4.30281 4.40576 4.42036 4.63546 4.71128 4.81699 4.87590 4.99028 5.15272 5.17719 5.26706 5.30152 5.39056 5.43366 5.50434 5.55721 5.56810 5.63210 5.77287 5.84404 5.92952 5.95525 6.06928 6.17013 6.25062 6.38718 6.42660 6.48180 6.54207 6.59611 6.64383 6.72797 6.74686 6.89248 7.04740 7.36148 7.41433 7.56417 7.77374 7.83337 7.94316 8.43364 8.63480 9.07250 9.55975 11.08298 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016478 B = 0.002170 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.870871 B =12901.231488 C =13610.730795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.095 4.095 3 C -0.094 4.094 4 C -0.120 4.120 5 C -0.091 4.091 6 C -0.122 4.122 7 C 0.558 3.442 8 O -0.542 6.542 9 N -0.514 5.514 10 N -0.535 5.535 11 C 0.511 3.489 12 O -0.497 6.497 13 C 0.044 3.956 14 N -0.504 5.504 15 C 0.166 3.834 16 C -0.505 4.505 17 H 0.085 0.915 18 C 0.068 3.932 19 N -0.898 5.898 20 Si 0.873 3.127 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.269 1.269 24 C 0.066 3.934 25 C -0.088 4.088 26 C -0.147 4.147 27 C -0.124 4.124 28 C -0.057 4.057 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.128 0.872 33 H 0.132 0.868 34 H 0.129 0.871 35 H 0.431 0.569 36 H 0.428 0.572 37 H 0.064 0.936 38 H 0.102 0.898 39 H -0.009 1.009 40 H 0.025 0.975 41 H 0.263 0.737 42 H 0.020 0.980 43 H 0.090 0.910 44 H 0.063 0.937 45 H 0.054 0.946 46 H 0.047 0.953 47 H 0.043 0.957 48 H 0.042 0.958 49 H 0.082 0.918 50 H 0.028 0.972 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.870 10.716 5.365 28.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.095 4.095 3 C -0.112 4.112 4 C -0.138 4.138 5 C -0.109 4.109 6 C -0.126 4.126 7 C 0.345 3.655 8 O -0.419 6.419 9 N -0.261 5.261 10 N -0.288 5.288 11 C 0.298 3.702 12 O -0.367 6.367 13 C -0.090 4.090 14 N -0.228 5.228 15 C 0.040 3.960 16 C -0.544 4.544 17 H 0.103 0.897 18 C -0.133 4.133 19 N -0.537 5.537 20 Si 0.701 3.299 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.194 1.194 24 C -0.062 4.062 25 C -0.107 4.107 26 C -0.205 4.205 27 C -0.182 4.182 28 C -0.076 4.076 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.146 0.854 33 H 0.150 0.850 34 H 0.147 0.853 35 H 0.274 0.726 36 H 0.269 0.731 37 H 0.081 0.919 38 H 0.120 0.880 39 H 0.009 0.991 40 H 0.043 0.957 41 H 0.073 0.927 42 H 0.038 0.962 43 H 0.109 0.891 44 H 0.081 0.919 45 H 0.073 0.927 46 H 0.066 0.934 47 H 0.062 0.938 48 H 0.061 0.939 49 H 0.101 0.899 50 H 0.047 0.953 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -25.476 11.125 5.069 28.257 hybrid contribution -0.257 -1.638 -0.193 1.669 sum -25.732 9.488 4.877 27.856 Atomic orbital electron populations 1.20815 0.90488 1.03163 1.02710 1.19924 0.96593 0.92695 1.00312 1.21304 0.94330 0.97796 0.97748 1.21127 0.94255 0.98149 1.00283 1.21382 1.00051 0.91860 0.97652 1.19624 0.94211 0.91781 1.07028 1.18329 0.80222 0.89754 0.77186 1.90788 1.67964 1.32193 1.50932 1.44688 1.04110 1.02193 1.75081 1.45277 1.04580 1.00147 1.78757 1.21482 0.79057 0.93747 0.75950 1.90716 1.66873 1.32581 1.46578 1.21940 0.92155 0.91516 1.03381 1.61416 0.99044 1.50305 1.11992 1.20268 0.94260 0.88683 0.92785 1.20999 0.91017 1.08886 1.33453 0.89750 1.24892 0.94907 0.97470 0.96073 1.69891 1.02900 1.38879 1.42035 0.86904 0.78314 0.84379 0.80335 1.20206 1.21243 1.19359 1.22273 1.02471 0.94832 0.86623 1.21146 1.00412 0.96091 0.93019 1.21863 1.01479 1.00453 0.96699 1.21593 0.98187 0.95199 1.03175 1.21128 0.92254 0.98609 0.95648 0.90846 0.91167 0.91258 0.85423 0.85005 0.85347 0.72612 0.73061 0.91853 0.88020 0.99150 0.95720 0.92679 0.96205 0.89116 0.91868 0.92733 0.93377 0.93753 0.93888 0.89869 0.95314 0.84474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.55 10.01 36.01 0.36 -0.19 16 2 C -0.10 -0.68 5.87 -104.68 -0.61 -1.29 16 3 C -0.09 -0.59 9.69 -39.49 -0.38 -0.97 16 4 C -0.12 -0.80 10.03 -39.64 -0.40 -1.20 16 5 C -0.09 -0.73 9.54 -39.18 -0.37 -1.10 16 6 C -0.12 -1.20 5.87 -104.97 -0.62 -1.82 16 7 C 0.56 6.70 7.89 -12.33 -0.10 6.60 16 8 O -0.54 -7.87 16.19 5.32 0.09 -7.79 16 9 N -0.51 -6.05 6.21 30.53 0.19 -5.86 16 10 N -0.54 -6.72 6.26 31.22 0.20 -6.52 16 11 C 0.51 7.66 6.57 -10.99 -0.07 7.59 16 12 O -0.50 -8.79 12.00 5.56 0.07 -8.73 16 13 C 0.04 0.67 5.56 -4.98 -0.03 0.65 16 14 N -0.50 -9.99 3.43 -237.51 -0.81 -10.80 16 15 C 0.17 3.80 3.74 -4.98 -0.02 3.79 16 16 C -0.51 -13.97 8.96 -34.44 -0.31 -14.28 16 17 H 0.08 2.57 7.80 -52.49 -0.41 2.16 16 18 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 19 N -0.90 -27.20 13.96 55.43 0.77 -26.43 16 20 Si 0.87 20.97 27.37 -169.99 -4.65 16.32 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.27 -6.13 6.69 56.52 0.38 -5.75 16 24 C 0.07 1.22 4.18 -3.82 -0.02 1.21 16 25 C -0.09 -1.48 2.39 -90.62 -0.22 -1.70 16 26 C -0.15 -2.12 9.19 37.16 0.34 -1.78 16 27 C -0.12 -2.30 8.45 37.15 0.31 -1.99 16 28 C -0.06 -0.52 9.24 -39.19 -0.36 -0.88 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 31 H 0.07 0.25 8.08 -51.92 -0.42 -0.17 16 32 H 0.13 0.51 8.06 -52.48 -0.42 0.09 16 33 H 0.13 0.61 8.06 -52.48 -0.42 0.18 16 34 H 0.13 0.88 6.41 -52.49 -0.34 0.54 16 35 H 0.43 4.66 6.04 -182.60 -1.10 3.56 16 36 H 0.43 4.79 8.00 -182.60 -1.46 3.33 16 37 H 0.06 0.83 7.48 -51.93 -0.39 0.44 16 38 H 0.10 1.44 7.45 -51.93 -0.39 1.05 16 39 H -0.01 -0.21 7.46 -51.93 -0.39 -0.60 16 40 H 0.02 0.56 6.77 -51.93 -0.35 0.21 16 41 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 42 H 0.02 0.34 7.57 -51.93 -0.39 -0.06 16 43 H 0.09 1.93 6.95 -51.93 -0.36 1.57 16 44 H 0.06 1.07 5.07 -51.93 -0.26 0.81 16 45 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 47 H 0.04 0.58 8.14 -51.92 -0.42 0.16 16 48 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 49 H 0.08 1.77 6.37 -51.93 -0.33 1.44 16 50 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 51 H 0.14 1.24 7.65 -52.49 -0.40 0.83 16 LS Contribution 409.44 15.07 6.17 6.17 Total: -1.00 -33.53 409.44 -10.52 -44.06 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -9.95 Total: 5.11 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -2.59 Total: -5.52 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: 0.34 Total: -49.61 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: 0.15 Total: -16.51 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.65 Total: 16.32 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.53 -10.52 -44.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777588671.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.551 kcal (2) G-P(sol) polarization free energy of solvation -33.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds